BLASTX nr result
ID: Coptis24_contig00008173
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00008173 (435 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002526061.1| multidrug resistance pump, putative [Ricinus... 67 1e-09 ref|XP_002269315.1| PREDICTED: pentatricopeptide repeat-containi... 63 3e-08 emb|CAN79167.1| hypothetical protein VITISV_031236 [Vitis vinifera] 59 3e-07 ref|XP_002267905.1| PREDICTED: pentatricopeptide repeat-containi... 59 4e-07 ref|XP_003549390.1| PREDICTED: pentatricopeptide repeat-containi... 55 6e-06 >ref|XP_002526061.1| multidrug resistance pump, putative [Ricinus communis] gi|223534642|gb|EEF36338.1| multidrug resistance pump, putative [Ricinus communis] Length = 589 Score = 67.0 bits (162), Expect = 1e-09 Identities = 44/126 (34%), Positives = 67/126 (53%), Gaps = 11/126 (8%) Frame = -2 Query: 347 MAFSTHISPSYLLKNSTLFNLFTRTPYFLS-NHNTNRVFLHFLQYPSFFSPNTIFNLPMN 171 M + +PS L + S LF+ FT+ P+F S +N + + FL Y + P + N+ + Sbjct: 1 MLRGSSFAPS-LNRASPLFSFFTKIPFFSSFQNNFHTIRRPFLHYHYYVFPKPVCNIQAS 59 Query: 170 Q----------NHSLSTSVQCATMPMPIGRTMSKKAQNKAYRQSPEGVLHLKLDMCSKHG 21 + + +LS Q + +S KA+ KA ++SPEGVL K+D CSKHG Sbjct: 60 RFCMERRVQFCSSALSAKPQIHESSALAAKKVSNKAKKKARQESPEGVLRSKIDNCSKHG 119 Query: 20 DLVEAL 3 +LVEAL Sbjct: 120 NLVEAL 125 >ref|XP_002269315.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230, mitochondrial-like [Vitis vinifera] Length = 895 Score = 62.8 bits (151), Expect = 3e-08 Identities = 42/104 (40%), Positives = 55/104 (52%), Gaps = 10/104 (9%) Frame = -2 Query: 284 FTRTPYFLS-NHNTNRVFLHFLQY----PSFFSPNTIFNLPMNQ-----NHSLSTSVQCA 135 F +TP H R LH + P+ +SP + MN+ N +LS + + Sbjct: 329 FAKTPILCHVGHTRLRPLLHGCSHHHFKPTTYSPYIKDRIFMNKSAHFSNLALSATNKYI 388 Query: 134 TMPMPIGRTMSKKAQNKAYRQSPEGVLHLKLDMCSKHGDLVEAL 3 +TMS KA+ KA R+SPEGVL KLDMCSK GD+VEAL Sbjct: 389 PESSAAAKTMSNKARKKARRESPEGVLRFKLDMCSKRGDVVEAL 432 >emb|CAN79167.1| hypothetical protein VITISV_031236 [Vitis vinifera] Length = 696 Score = 59.3 bits (142), Expect = 3e-07 Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 5/76 (6%) Frame = -2 Query: 215 PSFFSPNTIFNLPMNQN-HSLSTSVQCATMPMP----IGRTMSKKAQNKAYRQSPEGVLH 51 P+ +SP + N++ H L+ ++ +P +TMS K + KA R+SPEGVL Sbjct: 357 PTTYSPYIKDRIFTNKSAHFLNVALSATNKYIPESSAAAKTMSNKTRKKARRESPEGVLR 416 Query: 50 LKLDMCSKHGDLVEAL 3 K DMCSKHGD+VEAL Sbjct: 417 FKTDMCSKHGDVVEAL 432 >ref|XP_002267905.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230, mitochondrial-like [Vitis vinifera] Length = 526 Score = 58.9 bits (141), Expect = 4e-07 Identities = 30/55 (54%), Positives = 37/55 (67%) Frame = -2 Query: 167 NHSLSTSVQCATMPMPIGRTMSKKAQNKAYRQSPEGVLHLKLDMCSKHGDLVEAL 3 N +LS + + + TMS KA+ KA R+SPEGVL KLDMCSK GD+VEAL Sbjct: 9 NLALSATNKYIPESSAVAETMSNKARKKARRESPEGVLRFKLDMCSKRGDVVEAL 63 >ref|XP_003549390.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230, mitochondrial-like [Glycine max] Length = 550 Score = 55.1 bits (131), Expect = 6e-06 Identities = 33/100 (33%), Positives = 58/100 (58%), Gaps = 3/100 (3%) Frame = -2 Query: 293 FNLFTRTPYF---LSNHNTNRVFLHFLQYPSFFSPNTIFNLPMNQNHSLSTSVQCATMPM 123 F++FT++ Y+ LS+HN H L + FS ++ P +++ +T+++ Sbjct: 9 FSIFTQSHYWRPLLSSHNAK----HALTAATNFSITSLARTPKSRDEGTTTTIK------ 58 Query: 122 PIGRTMSKKAQNKAYRQSPEGVLHLKLDMCSKHGDLVEAL 3 +S K++ KA+ +SPEGVL KL+ CSK GD+++AL Sbjct: 59 -----LSSKSRRKAFYESPEGVLLRKLNECSKDGDVIQAL 93