BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00008088
         (3280 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002523081.1| ATP-dependent RNA helicase, putative [Ricinu...  1276   0.0  
emb|CBI36846.3| unnamed protein product [Vitis vinifera]             1274   0.0  
ref|XP_002267435.2| PREDICTED: zinc finger CCCH domain-containin...  1264   0.0  
ref|XP_002882127.1| zinc finger helicase family protein [Arabido...  1204   0.0  
ref|NP_182290.1| zinc finger CCCH domain-containing protein 31 [...  1201   0.0  

>ref|XP_002523081.1| ATP-dependent RNA helicase, putative [Ricinus communis]
            gi|223537643|gb|EEF39266.1| ATP-dependent RNA helicase,
            putative [Ricinus communis]
          Length = 1025

 Score = 1276 bits (3301), Expect = 0.0
 Identities = 639/1002 (63%), Positives = 765/1002 (76%), Gaps = 14/1002 (1%)
 Frame = +3

Query: 39   LPVMAMRSKIVEKILENRVTLIIGETGCGKSSQVPQFLLQQGMEPILCTQPXXXXXXXXX 218
            LP+M++R KIVEK+LENRVTLI+G+TGCGKSSQVPQFLL++ MEPILCTQP         
Sbjct: 27   LPIMSLRQKIVEKVLENRVTLIVGDTGCGKSSQVPQFLLEENMEPILCTQPRRFAVVAVA 86

Query: 219  XXXXXXXGCEVGGEVGYHIGHSKVLSEGSRIIFKTAGVLLDEMRDKGMDALKYKAIILDE 398
                    CE+GGEVGYHIGH K LSE S+I+FKTAGVL DEMR+KG++ALKYK IILDE
Sbjct: 87   KMVAKARNCELGGEVGYHIGHLKHLSERSKIVFKTAGVLSDEMREKGLNALKYKVIILDE 146

Query: 399  VHERSVESDLVLACVKQFLLKSKDLRVVLMSATADITRYRDYFKDLGRDERVEVLAIPTS 578
            VHERS+ESDLVL CVKQFLL++ DLRVVLMSATAD  RYRDYFKDLGR ERVEVLAIP+S
Sbjct: 147  VHERSIESDLVLVCVKQFLLRNNDLRVVLMSATADFGRYRDYFKDLGRGERVEVLAIPSS 206

Query: 579  TQQTIFQRRVLYLEQVNELLGVDSESVSGRYSSGIGPS-IEAEIKPXXXXXXXXXXXXXX 755
             QQ +FQRRV YLEQ        S+ ++ +Y SG  P+ + A+IKP              
Sbjct: 207  NQQALFQRRVSYLEQEITC----SQVLATKYCSGPSPAMVSADIKPEVHKLIHDLVMHIH 262

Query: 756  XNEPDLEKSILVFLPTYYSLEQQWSLLKPFSSFFKVHILHRSIDTDQALMAMKIWKSHRK 935
             NEPD+EK ILVFLPTY+ L QQW LLKP  S FKVHILH SIDT+QAL+AMKIWKSHRK
Sbjct: 263  DNEPDIEKGILVFLPTYHDLLQQWYLLKPLGSCFKVHILHGSIDTEQALLAMKIWKSHRK 322

Query: 936  VILATNIAESSVTIPGVAFVIDSCRSLQVYWDSIRKKESAELAWVSKSQAEQRKGRTGRT 1115
            VILATNIAESSVTIP VA+VIDSCRSLQV+WD  RKK+ AEL WVSKSQA+QRKGRTGRT
Sbjct: 323  VILATNIAESSVTIPKVAYVIDSCRSLQVFWDGTRKKDYAELVWVSKSQADQRKGRTGRT 382

Query: 1116 CDGHIYRLVSRSFFNKLNDHDPPSILRLSLRQQVLMICCAESKAINDPKVLMQKAMDPPD 1295
            CDG IYRLV+RSFFNKL +++ P+ILRLSLRQQVLM+CCAESKAINDP+VL+QK +DPPD
Sbjct: 383  CDGQIYRLVTRSFFNKLQEYESPAILRLSLRQQVLMVCCAESKAINDPRVLLQKTLDPPD 442

Query: 1296 PEVVEDALSLLVHIQALEKPSSHRGRYEPTFYGRLLASISLSFDASFLIVKFGDVGLLRE 1475
            P V+EDAL+LLVHI+AL++ S+ RGRYEPTFYGRLLAS  LSFDASF+++KFGDVGLLRE
Sbjct: 443  PRVIEDALNLLVHIKALDRTSA-RGRYEPTFYGRLLASFPLSFDASFIVLKFGDVGLLRE 501

Query: 1476 GIVIGILMDQQPLPIFHPFGQEFLFKTYIESYFEGNNDSTVLSGRKEMIFMGNLCAYQFW 1655
            GI+IGILMD QP PI HPFG+E LF  Y   Y+ G+ ++ V  GRKEMI MGNLCAY+FW
Sbjct: 502  GILIGILMDIQPQPILHPFGEEHLFAEYAYHYYGGDCNNMVRIGRKEMILMGNLCAYKFW 561

Query: 1656 QRVYKDKHRLERLKQLIKSDEPKVTHMILPKLEEEWCSFHNLLQSSLHHVSQIYEDILNS 1835
            QRV+KD+HRLE LK+L   DE K    +LPK+EEEWCSFHNL+ SSLH VS+IYEDIL+S
Sbjct: 562  QRVFKDRHRLEHLKRLSTFDEMKAVTSLLPKIEEEWCSFHNLVWSSLHQVSEIYEDILSS 621

Query: 1836 IHRYRPRFLVRAKGLPSYYDPYEFEHTCLLQSLPKGAISVNPADDEHLDESLETRTCVAL 2015
            +HR+RPRFL +  GLP+YYDPYEF H CLL+S     I V  ADDEH + S E + C A+
Sbjct: 622  LHRFRPRFLGKCDGLPTYYDPYEFGHVCLLKSQQNEDIVVVAADDEHQEPSSEIKKCCAV 681

Query: 2016 PFVGSNDFQAVTVAEKFATIIKEIRIQYT-------------EDTTKKNLDILESPNTSE 2156
            PFV S  FQ + VAEK  TI+KE+    T              D    N D+  S    E
Sbjct: 682  PFVDSGHFQTINVAEKLLTIVKEVNKLCTGNDSSYVNGDPSGNDAGYVNEDV--SHVNEE 739

Query: 2157 VPLCTFFIKGLCNKGSQCYYSHSLEAKRPVCKFFFSYQGCRNGENCFFSHGLCQPVPSFS 2336
             PLC +F+ G CNKGSQC +SHSL+AK+P C++FF+ QGCRNGE+C FSH +   V S S
Sbjct: 740  APLCVYFVNGSCNKGSQCSFSHSLQAKKPACRYFFTLQGCRNGESCSFSHDIGSSVSSCS 799

Query: 2337 SSNLCLPEDELPDTSSFLQLMPTSSDGCILVLDDTDMHFSSNLCHFCDPTKIITTTSVPQ 2516
             +  C PED+  +  S LQL PTSSDGCIL+L+D+D+HFS N   F DP+KII+TT + +
Sbjct: 800  PAP-CPPEDDDVNAVSLLQLFPTSSDGCILLLEDSDLHFSLNFACFYDPSKIISTTCMSE 858

Query: 2517 TSIFDNYMSSVKIMWGLSHPYQTILLGAGKNGIPWRQVQCVFWFAKFTVNSEGLEGQRSL 2696
            TS+ D  ++ V+I+W    P +TI+  AG+N IPW +V+C+ WF  F   SE LEGQ+ L
Sbjct: 859  TSLNDPSLNGVRILWEFRDPCRTIISKAGRNLIPWSEVKCILWFPSFASQSENLEGQKIL 918

Query: 2697 VQKFFDYLVIRVFGESLYEVRVILTMNNIRFSLLQVEKLARESFFFLTESFAFDESSFGE 2876
            VQ FFDYL  R+  +SLYE+R+I+TMNN+RF+ LQVEKL RESFFFL ESF FDE+SFGE
Sbjct: 919  VQNFFDYLASRIIADSLYELRIIITMNNVRFAQLQVEKLGRESFFFLGESFPFDEASFGE 978

Query: 2877 FADTMTLKKPMTPSRPISYVFDVHPPSDIQFGDYASVLHNCL 3002
             AD +  +KPM  S+ ISYVFD+ PP+DIQF DYA+ LH CL
Sbjct: 979  LADGVRTRKPMPASKAISYVFDLQPPTDIQFDDYAATLHKCL 1020


>emb|CBI36846.3| unnamed protein product [Vitis vinifera]
          Length = 1007

 Score = 1274 bits (3296), Expect = 0.0
 Identities = 640/998 (64%), Positives = 768/998 (76%), Gaps = 6/998 (0%)
 Frame = +3

Query: 39   LPVMAMRSKIVEKILENRVTLIIGETGCGKSSQVPQFLLQQGMEPILCTQPXXXXXXXXX 218
            LPVMA+R KIVEKI+ENRVTLI+GETGCGKSSQVPQFLL++ M PILCTQP         
Sbjct: 20   LPVMALRKKIVEKIMENRVTLIVGETGCGKSSQVPQFLLEENMAPILCTQPRRFAVVAVA 79

Query: 219  XXXXXXXGCEVGGEVGYHIGHSKVLSEGSRIIFKTAGVLLDEMRDKGMDALKYKAIILDE 398
                     EVGGEVGYHIGHSK+LSE S+I+FKTAGVLLDEMR+KG  AL+YK IILDE
Sbjct: 80   RMVAKARNSEVGGEVGYHIGHSKLLSERSKIVFKTAGVLLDEMREKGSKALEYKVIILDE 139

Query: 399  VHERSVESDLVLACVKQFLLKSKDLRVVLMSATADITRYRDYFKDLGRDERVEVLAIPTS 578
            VHERSVESDLVL CVKQF+L+  DLRVVLMSATADI RYRDYFKDLGR ERVEVLAIP S
Sbjct: 140  VHERSVESDLVLVCVKQFMLRDYDLRVVLMSATADIARYRDYFKDLGRGERVEVLAIPNS 199

Query: 579  TQQTIFQRRVLYLEQVNELLGVDSESVSGRYSSGIGPSIE-AEIKPXXXXXXXXXXXXXX 755
            +Q+T FQR+V YLEQV ELLG++SE +S RY SG  PS++ A+IKP              
Sbjct: 200  SQKTFFQRKVSYLEQVTELLGINSE-LSTRYLSGPSPSMDNADIKPEVHKLIHDLVLKIH 258

Query: 756  XNEPDLEKSILVFLPTYYSLEQQWSLLKPFSSFFKVHILHRSIDTDQALMAMKIWKSHRK 935
             NE D+EKSILVFLPTY SLEQQW LLKP SS FK+HILHRSIDT+QALMAMKIWKSHRK
Sbjct: 259  KNELDIEKSILVFLPTYQSLEQQWYLLKPLSSCFKIHILHRSIDTEQALMAMKIWKSHRK 318

Query: 936  VILATNIAESSVTIPGVAFVIDSCRSLQVYWDSIRKKESAELAWVSKSQAEQRKGRTGRT 1115
            VILATNIAESSVTIP VA+VIDSCRSLQV+WDS RKKE++EL WVSKSQAEQR+GRTGRT
Sbjct: 319  VILATNIAESSVTIPKVAYVIDSCRSLQVFWDSNRKKEASELTWVSKSQAEQRRGRTGRT 378

Query: 1116 CDGHIYRLVSRSFFNKLNDHDPPSILRLSLRQQVLMICCAESKAINDPKVLMQKAMDPPD 1295
            CDG ++RLV+ SFFNKL D++PP+ILRLSLRQQVL+ICCAE +AINDPKVL+QKA+DPPD
Sbjct: 379  CDGQVFRLVTGSFFNKLQDYEPPAILRLSLRQQVLLICCAEPRAINDPKVLLQKALDPPD 438

Query: 1296 PEVVEDALSLLVHIQALEKPSSHRGRYEPTFYGRLLASISLSFDASFLIVKFGDVGLLRE 1475
            P VVEDAL  LV I ALEK +  RGRYEP+FYGRLLAS SLSFDAS LI+KFGD+G+LRE
Sbjct: 439  PVVVEDALRFLVRINALEK-TLPRGRYEPSFYGRLLASFSLSFDASVLILKFGDIGMLRE 497

Query: 1476 GIVIGILMDQQPLPIFHPFGQEFLFKTYIESYFEGNNDSTVLSGRKEMIFMGNLCAYQFW 1655
            GI++GILMD QPLPI HPFG+E L   Y + YF G++D +VL+G++E+ F+ NL A+QFW
Sbjct: 498  GILLGILMDIQPLPILHPFGKENLSAQYTDCYFHGDSDKSVLTGKREVAFIANLSAFQFW 557

Query: 1656 QRVYKDKHRLERLKQLIKSDEPKVTHMILP--KLEEEWCSFHNLLQSSLHHVSQIYEDIL 1829
            QRV+KDKHRLERLK+++K DE   T   LP  K+EEEWC+FH L+QSSL+HVS+IYED+L
Sbjct: 558  QRVFKDKHRLERLKKILKLDEMDTTQKQLPLAKIEEEWCTFHMLVQSSLNHVSEIYEDVL 617

Query: 1830 NSIHRYRPRFLVRAKGLPSYYDPYEFEHTCLLQSLPKGAISVNPADDEHLDESLETRTCV 2009
            NS+HR+RP+FLV++ G PSYY+PYEFEHTCL+  LP G       DD+  +   E R C+
Sbjct: 618  NSVHRFRPKFLVKSDGPPSYYEPYEFEHTCLITQLPDG-----DTDDDQFEPPSEARKCL 672

Query: 2010 ALPFVGSNDFQAVTVAEKFATIIKEIRIQYTEDTTKKNLDILESPNTSEVPLCTFFIKGL 2189
            A+PFV  N FQ   +AEK A +IKEIR+QYTE  +     ++   N  +   C FF+ G 
Sbjct: 673  AVPFVSPNQFQNDIIAEKMALVIKEIRVQYTEKNSSNQHKVV---NDGKASPCRFFVNGS 729

Query: 2190 CNKGSQCYYSHSL---EAKRPVCKFFFSYQGCRNGENCFFSHGLCQPVPSFSSSNLCLPE 2360
            CN+G++C +SHSL   E K P CKFFFS QGCRNG++CFFSH L   V  FS S  CLPE
Sbjct: 730  CNRGNKCPFSHSLPVNEVKGPTCKFFFSLQGCRNGDSCFFSHDLDPSVSEFSGSGECLPE 789

Query: 2361 DELPDTSSFLQLMPTSSDGCILVLDDTDMHFSSNLCHFCDPTKIITTTSVPQTSIFDNYM 2540
            D   D    LQ  P +  G +LVLDDTD+HF+ NL H  +P KII+TT +P  SI D  +
Sbjct: 790  DGDADAVLLLQFFPNALGGRVLVLDDTDLHFTINLAHKFNPFKIISTTCLPNISICDPSL 849

Query: 2541 SSVKIMWGLSHPYQTILLGAGKNGIPWRQVQCVFWFAKFTVNSEGLEGQRSLVQKFFDYL 2720
            ++VKI+WGL  PY+ I+   G+N IPW +V+C+ WF  F      LEGQ++L+QKFF+ L
Sbjct: 850  TAVKILWGLREPYKAIISTEGENPIPWNEVECILWFPNFESYGGNLEGQKNLIQKFFECL 909

Query: 2721 VIRVFGESLYEVRVILTMNNIRFSLLQVEKLARESFFFLTESFAFDESSFGEFADTMTLK 2900
             +R+  +++Y+V+VILTM NIRFS LQVEKL R+ FFFL  SF FDESSFGE  D +T K
Sbjct: 910  AVRILADAMYQVQVILTMKNIRFSQLQVEKLGRDCFFFLKCSFPFDESSFGELTDKVTTK 969

Query: 2901 KPMTPSRPISYVFDVHPPSDIQFGDYASVLHNCLQKTR 3014
            KPM  SR  SYVF++ PP+DI FGDYA+  +  L  T+
Sbjct: 970  KPMLVSRATSYVFNLQPPTDILFGDYATAFNKRLHGTK 1007


>ref|XP_002267435.2| PREDICTED: zinc finger CCCH domain-containing protein 31 [Vitis
            vinifera]
          Length = 1014

 Score = 1264 bits (3270), Expect = 0.0
 Identities = 638/1005 (63%), Positives = 767/1005 (76%), Gaps = 13/1005 (1%)
 Frame = +3

Query: 39   LPVMAMRSKIVEKILENRVTLIIGETGCGKSSQVPQFLLQQGMEPILCTQPXXXXXXXXX 218
            LPVMA+R KIVEKI+ENRVTLI+GETGCGKSSQVPQFLL++ M PILCTQP         
Sbjct: 20   LPVMALRKKIVEKIMENRVTLIVGETGCGKSSQVPQFLLEENMAPILCTQPRRFAVVAVA 79

Query: 219  XXXXXXXGCEVGGEVGYHIGHSKVLSEGSRIIFKTAGVLLDEMRDKGMDALKYKAIILDE 398
                     EVGGEVGYHIGHSK+LSE S+I+FKTAGVLLDEMR+KG  AL+YK IILDE
Sbjct: 80   RMVAKARNSEVGGEVGYHIGHSKLLSERSKIVFKTAGVLLDEMREKGSKALEYKVIILDE 139

Query: 399  VHERSVESDLVLACVKQFLLKSKDLRVVLMSATADITRYRDYFKDLGRDERVEVLAIPTS 578
            VHERSVESDLVL CVKQF+L+  DLRVVLMSATADI RYRDYFKDLGR ERVEVLAIP S
Sbjct: 140  VHERSVESDLVLVCVKQFMLRDYDLRVVLMSATADIARYRDYFKDLGRGERVEVLAIPNS 199

Query: 579  TQQTIFQRRVLYLEQVNELLGVDSESVSGRYSSGIGPSIE-AEIKPXXXXXXXXXXXXXX 755
            +Q+T FQR+V YLEQV ELLG++SE +S RY SG  PS++ A+IKP              
Sbjct: 200  SQKTFFQRKVSYLEQVTELLGINSE-LSTRYLSGPSPSMDNADIKPEVHKLIHDLVLKIH 258

Query: 756  XNEPDLEKSILVFLPTYYSLEQQWSLLKPFSSFFKVHILHRSIDTDQALMAMKIWKSHRK 935
             NE D+EKSILVFLPTY SLEQQW LLKP SS FK+HILHRSIDT+QALMAMKIWKSHRK
Sbjct: 259  KNELDIEKSILVFLPTYQSLEQQWYLLKPLSSCFKIHILHRSIDTEQALMAMKIWKSHRK 318

Query: 936  VILATNIAESSVTIPGVAFVIDSCRSLQVYWDSIRKKESAELAWVSKSQAEQRKGRTGRT 1115
            VILATNIAESSVTIP VA+VIDSCRSLQV+WDS RKKE++EL WVSKSQAEQR+GRTGRT
Sbjct: 319  VILATNIAESSVTIPKVAYVIDSCRSLQVFWDSNRKKEASELTWVSKSQAEQRRGRTGRT 378

Query: 1116 CDGHIYRLVSRSFFNKLNDHDPPSILRLSLRQQVLMICCAESKAINDPKVLMQKAMDPPD 1295
            CDG ++RLV+ SFFNKL D++PP+ILRLSLRQQVL+ICCAE +AINDPKVL+QKA+DPPD
Sbjct: 379  CDGQVFRLVTGSFFNKLQDYEPPAILRLSLRQQVLLICCAEPRAINDPKVLLQKALDPPD 438

Query: 1296 PEVVEDALSLLVHIQALEKPSSHRGRYEPTFYGRLLASISLSFDASFLIVKFGDVGLLRE 1475
            P VVEDAL  LV I ALEK +  RGRYEP+FYGRLLAS SLSFDAS LI+KFGD+G+LRE
Sbjct: 439  PVVVEDALRFLVRINALEK-TLPRGRYEPSFYGRLLASFSLSFDASVLILKFGDIGMLRE 497

Query: 1476 GIVIGILMDQQPLPIFHPFGQEFLFKTYIESYFEGNNDSTVLSGRKEMIFMGNLCAYQFW 1655
            GI++GILMD QPLPI HPFG+E L   Y + YF G++D +VL+G++E+ F+ NL A+QFW
Sbjct: 498  GILLGILMDIQPLPILHPFGKENLSAQYTDCYFHGDSDKSVLTGKREVAFIANLSAFQFW 557

Query: 1656 QRVYKDKHRLERLKQLIKSDEPKVTHMILP--KLEEEWCSFHNLLQSSLHHVSQIYEDIL 1829
            QRV+KDKHRLERLK+++K DE   T   LP  K+EEEWC+FH L+QSSL+HVS+IYED+L
Sbjct: 558  QRVFKDKHRLERLKKILKLDEMDTTQKQLPLAKIEEEWCTFHMLVQSSLNHVSEIYEDVL 617

Query: 1830 NSIHRYRPRFLVRAKGLPSYYDPYEFEHTCLLQSLPKGAISVNPADDEHLDESLETRTCV 2009
            NS+HR+RP+FLV++ G PSYY+PYEFEHTCL+  LP G       DD+  +   E R C+
Sbjct: 618  NSVHRFRPKFLVKSDGPPSYYEPYEFEHTCLITQLPDG-----DTDDDQFEPPSEARKCL 672

Query: 2010 ALPFVGSNDFQAVTVAEKFATIIKEIR-------IQYTEDTTKKNLDILESPNTSEVPLC 2168
            A+PFV  N FQ   +AEK A +IKE+        +QYTE  +     ++   N  +   C
Sbjct: 673  AVPFVSPNQFQNDIIAEKMALVIKEVLLSCASLVVQYTEKNSSNQHKVV---NDGKASPC 729

Query: 2169 TFFIKGLCNKGSQCYYSHSL---EAKRPVCKFFFSYQGCRNGENCFFSHGLCQPVPSFSS 2339
             FF+ G CN+G++C +SHSL   E K P CKFFFS QGCRNG++CFFSH L   V  FS 
Sbjct: 730  RFFVNGSCNRGNKCPFSHSLPVNEVKGPTCKFFFSLQGCRNGDSCFFSHDLDPSVSEFSG 789

Query: 2340 SNLCLPEDELPDTSSFLQLMPTSSDGCILVLDDTDMHFSSNLCHFCDPTKIITTTSVPQT 2519
            S  CLPED   D    LQ  P +  G +LVLDDTD+HF+ NL H  +P KII+TT +P  
Sbjct: 790  SGECLPEDGDADAVLLLQFFPNALGGRVLVLDDTDLHFTINLAHKFNPFKIISTTCLPNI 849

Query: 2520 SIFDNYMSSVKIMWGLSHPYQTILLGAGKNGIPWRQVQCVFWFAKFTVNSEGLEGQRSLV 2699
            SI D  +++VKI+WGL  PY+ I+   G+N IPW +V+C+ WF  F      LEGQ++L+
Sbjct: 850  SICDPSLTAVKILWGLREPYKAIISTEGENPIPWNEVECILWFPNFESYGGNLEGQKNLI 909

Query: 2700 QKFFDYLVIRVFGESLYEVRVILTMNNIRFSLLQVEKLARESFFFLTESFAFDESSFGEF 2879
            QKFF+ L +R+  +++Y+V+VILTM NIRFS LQVEKL R+ FFFL  SF FDESSFGE 
Sbjct: 910  QKFFECLAVRILADAMYQVQVILTMKNIRFSQLQVEKLGRDCFFFLKCSFPFDESSFGEL 969

Query: 2880 ADTMTLKKPMTPSRPISYVFDVHPPSDIQFGDYASVLHNCLQKTR 3014
             D +T KKPM  SR  SYVF++ PP+DI FGDYA+  +  L  T+
Sbjct: 970  TDKVTTKKPMLVSRATSYVFNLQPPTDILFGDYATAFNKRLHGTK 1014


>ref|XP_002882127.1| zinc finger helicase family protein [Arabidopsis lyrata subsp.
            lyrata] gi|297327966|gb|EFH58386.1| zinc finger helicase
            family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1015

 Score = 1204 bits (3115), Expect = 0.0
 Identities = 593/993 (59%), Positives = 752/993 (75%), Gaps = 5/993 (0%)
 Frame = +3

Query: 39   LPVMAMRSKIVEKILENRVTLIIGETGCGKSSQVPQFLLQQGMEPILCTQPXXXXXXXXX 218
            LP+MAM+ +I++KILENRVTLI+GE GCGKSSQVPQFLL+  M PILCTQP         
Sbjct: 26   LPIMAMKRRIIDKILENRVTLIVGEPGCGKSSQVPQFLLEANMAPILCTQPRRFAVVAVA 85

Query: 219  XXXXXXXGCEVGGEVGYHIGHSKVLSEGSRIIFKTAGVLLDEMRDKGMDALKYKAIILDE 398
                     ++GGE+GYHIGHSK+L+EGS+I+FKTAGVLLDEM DKG++AL+YK IILDE
Sbjct: 86   KMVAKSRNSDLGGEIGYHIGHSKILTEGSKILFKTAGVLLDEMLDKGLNALQYKVIILDE 145

Query: 399  VHERSVESDLVLACVKQFLLKSKDLRVVLMSATADITRYRDYFKDLGRDERVEVLAIPTS 578
            VHERSVESDLVL CVKQFL+K+ DLRVVLMSATADITRYRDYFK+LGR ERVEV+AIP+ 
Sbjct: 146  VHERSVESDLVLVCVKQFLMKNNDLRVVLMSATADITRYRDYFKELGRGERVEVVAIPSP 205

Query: 579  TQQTIFQRRVLYLEQVNELLGVDSESVSGRYSSGIGPS-IEAEIKPXXXXXXXXXXXXXX 755
             Q+TIFQRRVLYLEQV  LLG+ S+  +  Y  G  PS  +AEIKP              
Sbjct: 206  DQRTIFQRRVLYLEQVAGLLGMSSDFSA--YCPGPSPSSADAEIKPELQNLIHDLILYIH 263

Query: 756  XNEPDLEKSILVFLPTYYSLEQQWSLLKPFSSFFKVHILHRSIDTDQALMAMKIWKSHRK 935
              EPD+EKSILVFLPTYYSLEQQW  L+PF + F+VHILHRSIDT+QAL AMKI +S RK
Sbjct: 264  EKEPDIEKSILVFLPTYYSLEQQWHQLEPFRASFEVHILHRSIDTEQALAAMKICRSRRK 323

Query: 936  VILATNIAESSVTIPGVAFVIDSCRSLQVYWDSIRKKESAELAWVSKSQAEQRKGRTGRT 1115
            VILATNIAESSVTIP VA+VIDSCRSLQV+WD+ RK+++ +L WVS+SQAEQR+GRTGRT
Sbjct: 324  VILATNIAESSVTIPKVAYVIDSCRSLQVFWDASRKRDAVQLDWVSRSQAEQRRGRTGRT 383

Query: 1116 CDGHIYRLVSRSFFNKLNDHDPPSILRLSLRQQVLMICCAESKAINDPKVLMQKAMDPPD 1295
            CDG +YRLV  +FFNKL +H+PP+IL+LSLRQQVL ICC ES+AIND  VL+ KAMDPPD
Sbjct: 384  CDGEVYRLVPSAFFNKLEEHEPPAILKLSLRQQVLHICCTESRAINDANVLLAKAMDPPD 443

Query: 1296 PEVVEDALSLLVHIQALEKPSSHRGRYEPTFYGRLLASISLSFDASFLIVKFGDVGLLRE 1475
            P V++DAL +L+ I+AL K  S RGRYEPTFYGRLLAS  LSFDA  L+VKFG++G+LRE
Sbjct: 444  PNVIDDALKMLLSIRALRK--SPRGRYEPTFYGRLLASFPLSFDACILVVKFGEMGMLRE 501

Query: 1476 GIVIGILMDQQPLPIFHPFGQEFLFKTYIESYFEGNNDSTVLSGRKEMIFMGNLCAYQFW 1655
            GI++G+LMD QPLPI HPFG + LF  Y++ YF G+   T+ SGR+EM+ M N CA+QFW
Sbjct: 502  GILLGVLMDTQPLPIHHPFGDDSLFLEYLDHYFGGS--KTICSGRREMVLMANFCAFQFW 559

Query: 1656 QRVYKDKHRLERLKQLIKSDEPKVTHMILPKLEEEWCSFHNLLQSSLHHVSQIYEDILNS 1835
            QRV+KDKHRLE LKQL+  ++ K   ++ P++E+EWC FHN+LQSS +HVS++YED L+S
Sbjct: 560  QRVFKDKHRLENLKQLLAKEKDKDLKLMFPEIEKEWCDFHNILQSSFYHVSEMYEDTLSS 619

Query: 1836 IHRYRPRFLVRAKGLPSYYDPYEFEHTCLLQSLPKGAISVNPADDEHLDESLETRTCVAL 2015
             HR+RP+F+  +  LP+YY+PYEF+HTC ++        ++  D+++     E R CV++
Sbjct: 620  FHRFRPQFISSSDSLPTYYNPYEFDHTCYIECQLSEDKYLHSEDEDNNQPPPEVRKCVSM 679

Query: 2016 PFVGSNDFQAVTVAEKFATIIKEIRIQYTEDTTKKNLDILESPN---TSEVPLCTFFIKG 2186
            PFV  N FQA  VAE  A+IIKEIR Q T   +      +E  +     E P+C +F+ G
Sbjct: 680  PFVPPNAFQAYAVAENMASIIKEIRTQCTPSESDNGHGAIEPEDYVEDGEAPVCVYFLNG 739

Query: 2187 LCNKGSQCYYSHSLEAKRPVCKFFFSYQGCRNGENCFFSHGLCQPVPSFSSSNLCLPEDE 2366
             CN+G QC +SH+L++  P CKFF S QGCRNGE+C FSH + +   S+     CL E++
Sbjct: 740  FCNRGDQCTFSHTLQSTGPACKFFASLQGCRNGESCLFSHVMRRRATSYRLPPQCLAEED 799

Query: 2367 LPDTSSFLQLMPTSSDGCILVLDDTDMHFSSNLCHFCDPTKIITTTSVPQTSIFDNYMSS 2546
               TS  L L PTSS+GCILV DD+ M F+S++ +     +I+ T+S   T + D+ +++
Sbjct: 800  GSSTSPLLDLFPTSSEGCILVFDDSAMRFTSSIANCYPSWRILATSSSSDTLLCDSSLAN 859

Query: 2547 VKIMWGLSHPYQTILLGA-GKNGIPWRQVQCVFWFAKFTVNSEGLEGQRSLVQKFFDYLV 2723
             +I WGL+HPYQTI+  A G+N IPW +V+CV WF      ++  EGQ++++Q FF+Y+ 
Sbjct: 860  TRIFWGLNHPYQTIISKAGGENPIPWSEVKCVLWFLNPDSYADTPEGQKTILQNFFEYMA 919

Query: 2724 IRVFGESLYEVRVILTMNNIRFSLLQVEKLARESFFFLTESFAFDESSFGEFADTMTLKK 2903
            IR+ G++LYE+RVILTMNN+RFSLLQVEKLAR+SFFFL ESF  +  SFGEF DT+T++K
Sbjct: 920  IRLLGDNLYEIRVILTMNNVRFSLLQVEKLARDSFFFLGESFPHNSVSFGEFQDTLTIQK 979

Query: 2904 PMTPSRPISYVFDVHPPSDIQFGDYASVLHNCL 3002
            PM  SRPISYVF++H PSDIQFGDY S+LH  L
Sbjct: 980  PMQVSRPISYVFNLHSPSDIQFGDYTSLLHKSL 1012


>ref|NP_182290.1| zinc finger CCCH domain-containing protein 31 [Arabidopsis thaliana]
            gi|75317978|sp|O22243.2|C3H31_ARATH RecName: Full=Zinc
            finger CCCH domain-containing protein 31; Short=AtC3H31
            gi|3738282|gb|AAC63624.1| putative ATP-dependent RNA
            helicase A [Arabidopsis thaliana]
            gi|225898609|dbj|BAH30435.1| hypothetical protein
            [Arabidopsis thaliana] gi|330255781|gb|AEC10875.1| zinc
            finger CCCH domain-containing protein 31 [Arabidopsis
            thaliana]
          Length = 1015

 Score = 1201 bits (3107), Expect = 0.0
 Identities = 591/993 (59%), Positives = 748/993 (75%), Gaps = 5/993 (0%)
 Frame = +3

Query: 39   LPVMAMRSKIVEKILENRVTLIIGETGCGKSSQVPQFLLQQGMEPILCTQPXXXXXXXXX 218
            LP+MAM+ +I++KILENRVTLI+GE GCGKSSQVPQFLL+  M PILCTQP         
Sbjct: 26   LPIMAMKRRIIDKILENRVTLIVGEPGCGKSSQVPQFLLEANMAPILCTQPRRFAVVAVA 85

Query: 219  XXXXXXXGCEVGGEVGYHIGHSKVLSEGSRIIFKTAGVLLDEMRDKGMDALKYKAIILDE 398
                     ++GGE+GYHIGHSK+L+EGS+I+FKTAGVLLDEM DKG++ALKYK IILDE
Sbjct: 86   KMVAKSRNSDLGGEIGYHIGHSKILTEGSKILFKTAGVLLDEMLDKGLNALKYKVIILDE 145

Query: 399  VHERSVESDLVLACVKQFLLKSKDLRVVLMSATADITRYRDYFKDLGRDERVEVLAIPTS 578
            VHERSVESDLVL CVKQFL+K+ DLRVVLMSATADITRYRDYFK+LGR ERVEV+AIP+ 
Sbjct: 146  VHERSVESDLVLVCVKQFLMKNNDLRVVLMSATADITRYRDYFKELGRGERVEVVAIPSP 205

Query: 579  TQQTIFQRRVLYLEQVNELLGVDSESVSGRYSSGIGPS-IEAEIKPXXXXXXXXXXXXXX 755
             Q+TIFQRRVLYLEQV  LLGV S+  +  Y  G  PS  + EIKP              
Sbjct: 206  DQRTIFQRRVLYLEQVAGLLGVSSDLSA--YCPGPSPSSADTEIKPELQNLIHDLILYIH 263

Query: 756  XNEPDLEKSILVFLPTYYSLEQQWSLLKPFSSFFKVHILHRSIDTDQALMAMKIWKSHRK 935
              EPD+EKSILVFLPTYYSLEQQ+  L+PF + F+VHILHRSIDT+QAL AMKI +S RK
Sbjct: 264  EKEPDIEKSILVFLPTYYSLEQQYHQLEPFFASFEVHILHRSIDTEQALAAMKICRSRRK 323

Query: 936  VILATNIAESSVTIPGVAFVIDSCRSLQVYWDSIRKKESAELAWVSKSQAEQRKGRTGRT 1115
            VILATNIAESSVTIP VA+VIDSCRSLQV+WD  RK+++ +L WVS+SQAEQR+GRTGRT
Sbjct: 324  VILATNIAESSVTIPKVAYVIDSCRSLQVFWDPSRKRDAVQLVWVSRSQAEQRRGRTGRT 383

Query: 1116 CDGHIYRLVSRSFFNKLNDHDPPSILRLSLRQQVLMICCAESKAINDPKVLMQKAMDPPD 1295
            CDG +YRLV  +FFNKL +H+PPSIL+LSLRQQVL ICC ES+AIND   L+ KAMDPPD
Sbjct: 384  CDGEVYRLVPSAFFNKLEEHEPPSILKLSLRQQVLHICCTESRAINDANALLAKAMDPPD 443

Query: 1296 PEVVEDALSLLVHIQALEKPSSHRGRYEPTFYGRLLASISLSFDASFLIVKFGDVGLLRE 1475
            P+VV+DAL +L+ IQAL K  S RGRYEPTFYGRLLAS  LSFDAS L+VKFG++G+LR+
Sbjct: 444  PDVVDDALRMLLSIQALRK--SPRGRYEPTFYGRLLASFPLSFDASILVVKFGEMGMLRQ 501

Query: 1476 GIVIGILMDQQPLPIFHPFGQEFLFKTYIESYFEGNNDSTVLSGRKEMIFMGNLCAYQFW 1655
            GI++G+LMD  PLPI HPFG + LF  Y++ YF G+   T+  GR+EM+ M N CA+QFW
Sbjct: 502  GILLGVLMDTLPLPIHHPFGDDSLFLEYVDHYFGGS--KTISGGRREMVLMANFCAFQFW 559

Query: 1656 QRVYKDKHRLERLKQLIKSDEPKVTHMILPKLEEEWCSFHNLLQSSLHHVSQIYEDILNS 1835
            QRV+KDKHRLE LKQL+  ++ K   ++ P++E+EWC FHN+ QSS +HVS++YED L+S
Sbjct: 560  QRVFKDKHRLENLKQLLSKEKDKDLKLMFPEIEKEWCDFHNIAQSSFYHVSELYEDTLSS 619

Query: 1836 IHRYRPRFLVRAKGLPSYYDPYEFEHTCLLQSLPKGAISVNPADDEHLDESLETRTCVAL 2015
             HR+RP+F+  +   P+YY+PYEF+HTC ++  P     ++  D ++     E R CV++
Sbjct: 620  FHRFRPQFISSSDSQPTYYNPYEFDHTCYIECQPSEDKYLHSEDVDNNQPPPEVRKCVSV 679

Query: 2016 PFVGSNDFQAVTVAEKFATIIKEIRIQYTEDTTKKNLDILESPN---TSEVPLCTFFIKG 2186
            PFV  N FQA  +AE  A+IIKEIR Q T   +      LE  +     E P+C +F+ G
Sbjct: 680  PFVPPNAFQANAIAENMASIIKEIRTQCTPSESDNGHGALEPEDYVEYGEAPVCVYFLNG 739

Query: 2187 LCNKGSQCYYSHSLEAKRPVCKFFFSYQGCRNGENCFFSHGLCQPVPSFSSSNLCLPEDE 2366
             CN+G QC ++H+L++ RP CKFF S QGCRNGE+C FSH + +   S+     CLPE++
Sbjct: 740  YCNRGGQCTFTHTLQSTRPACKFFASSQGCRNGESCLFSHAMRRRTTSYLPPPQCLPEED 799

Query: 2367 LPDTSSFLQLMPTSSDGCILVLDDTDMHFSSNLCHFCDPTKIITTTSVPQTSIFDNYMSS 2546
               TS  L L PTSS+GCILV DD+DMHF+S++ +     +I++T+S  +T   D+ ++ 
Sbjct: 800  GSSTSPLLDLFPTSSEGCILVFDDSDMHFTSSIANRYPSWRILSTSSSSETLFCDSSLAD 859

Query: 2547 VKIMWGLSHPYQTILLGAGK-NGIPWRQVQCVFWFAKFTVNSEGLEGQRSLVQKFFDYLV 2723
             +I WGL+HPYQTI+  AG+ N IPW +V+CV WF      ++  E Q++++Q FF+++ 
Sbjct: 860  TRIFWGLNHPYQTIISKAGRENPIPWNEVKCVLWFLNPDSYADTPEKQKTILQNFFEHMA 919

Query: 2724 IRVFGESLYEVRVILTMNNIRFSLLQVEKLARESFFFLTESFAFDESSFGEFADTMTLKK 2903
            IR+ G+ LY++RV+LTMNN+RFSLLQVEKLARESFFFL ESF  D  SFG F DT+T++K
Sbjct: 920  IRLLGDKLYKIRVVLTMNNVRFSLLQVEKLARESFFFLGESFPHDSESFGAFQDTLTIQK 979

Query: 2904 PMTPSRPISYVFDVHPPSDIQFGDYASVLHNCL 3002
            PM  SRPISYVF++HPPSDIQFG+Y S+L   L
Sbjct: 980  PMLVSRPISYVFNLHPPSDIQFGNYTSLLRKSL 1012