BLASTX nr result
ID: Coptis24_contig00008087
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00008087
(701 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ADE74631.1| unknown [Vitis vinifera] 97 2e-51
ref|XP_002279202.2| PREDICTED: zinc finger CCCH domain-containin... 94 9e-51
ref|XP_003632114.1| PREDICTED: zinc finger CCCH domain-containin... 94 2e-50
emb|CAN74402.1| hypothetical protein VITISV_043632 [Vitis vinifera] 94 2e-50
ref|XP_002277747.2| PREDICTED: zinc finger CCCH domain-containin... 100 8e-50
>gb|ADE74631.1| unknown [Vitis vinifera]
Length = 740
Score = 96.7 bits (239), Expect(3) = 2e-51
Identities = 53/81 (65%), Positives = 60/81 (74%), Gaps = 9/81 (11%)
Frame = +2
Query: 434 FETGNNGGDEPDLSWVQSLVKESPPEI-KEKPVVPTSAVTPPGEN--------SNSKAQI 586
FE GNNG +EPDLSWVQSLVKESPPE+ KEK P SA GE SNS +QI
Sbjct: 660 FELGNNG-EEPDLSWVQSLVKESPPEMMKEKLAAPVSASASSGEGLNSNSQIESNSNSQI 718
Query: 587 ESLDHAVLGAWLEQMQLDQLV 649
+S+DH+V+GAWLEQMQLDQLV
Sbjct: 719 DSVDHSVIGAWLEQMQLDQLV 739
Score = 81.3 bits (199), Expect(3) = 2e-51
Identities = 40/46 (86%), Positives = 42/46 (91%)
Frame = +1
Query: 1 LSPINTNVFSPKNVDHPLLQASFGGLHSPGRMSPRSMEPISPMSSR 138
LSPINTNVFSPKNV+HPLLQASF G+ SPGRMSPRSMEPISPM R
Sbjct: 550 LSPINTNVFSPKNVEHPLLQASF-GISSPGRMSPRSMEPISPMGPR 594
Score = 72.0 bits (175), Expect(3) = 2e-51
Identities = 32/47 (68%), Positives = 41/47 (87%), Gaps = 1/47 (2%)
Frame = +3
Query: 231 SSRDLGSNM-SGLVGSPVNSWSKWGSPNGKLDWAVHGDELGPQRKTT 368
SSRDLGSN + +VGSPVNSWSKWGSP GKLDW+V+GDE+G ++++
Sbjct: 612 SSRDLGSNNPASVVGSPVNSWSKWGSPTGKLDWSVNGDEMGRLKRSS 658
>ref|XP_002279202.2| PREDICTED: zinc finger CCCH domain-containing protein 30 [Vitis
vinifera]
Length = 740
Score = 94.4 bits (233), Expect(3) = 9e-51
Identities = 52/81 (64%), Positives = 59/81 (72%), Gaps = 9/81 (11%)
Frame = +2
Query: 434 FETGNNGGDEPDLSWVQSLVKESPPEI-KEKPVVPTSAVTPPGEN--------SNSKAQI 586
FE GNNG +EPDLSWV SLVKESPPE+ KEK P SA GE SNS +QI
Sbjct: 660 FELGNNG-EEPDLSWVHSLVKESPPEMMKEKFAAPVSASASSGEGLNSNSQIESNSNSQI 718
Query: 587 ESLDHAVLGAWLEQMQLDQLV 649
+S+DH+V+GAWLEQMQLDQLV
Sbjct: 719 DSVDHSVIGAWLEQMQLDQLV 739
Score = 81.3 bits (199), Expect(3) = 9e-51
Identities = 40/46 (86%), Positives = 42/46 (91%)
Frame = +1
Query: 1 LSPINTNVFSPKNVDHPLLQASFGGLHSPGRMSPRSMEPISPMSSR 138
LSPINTNVFSPKNV+HPLLQASF G+ SPGRMSPRSMEPISPM R
Sbjct: 550 LSPINTNVFSPKNVEHPLLQASF-GISSPGRMSPRSMEPISPMGPR 594
Score = 72.0 bits (175), Expect(3) = 9e-51
Identities = 32/47 (68%), Positives = 41/47 (87%), Gaps = 1/47 (2%)
Frame = +3
Query: 231 SSRDLGSNM-SGLVGSPVNSWSKWGSPNGKLDWAVHGDELGPQRKTT 368
SSRDLGSN + +VGSPVNSWSKWGSP GKLDW+V+GDE+G ++++
Sbjct: 612 SSRDLGSNNPASVVGSPVNSWSKWGSPTGKLDWSVNGDEMGRLKRSS 658
>ref|XP_003632114.1| PREDICTED: zinc finger CCCH domain-containing protein 30-like
[Vitis vinifera]
Length = 725
Score = 94.4 bits (233), Expect(3) = 2e-50
Identities = 44/63 (69%), Positives = 53/63 (84%)
Frame = +2
Query: 464 PDLSWVQSLVKESPPEIKEKPVVPTSAVTPPGENSNSKAQIESLDHAVLGAWLEQMQLDQ 643
PDLSWVQSLVKESPP I+E P +P S +T + SNS ++I+S+DHAVLGAWLEQMQLDQ
Sbjct: 663 PDLSWVQSLVKESPPGIQETPTLPVSGMTVSADGSNSISRIDSIDHAVLGAWLEQMQLDQ 722
Query: 644 LVA 652
+VA
Sbjct: 723 IVA 725
Score = 78.6 bits (192), Expect(3) = 2e-50
Identities = 38/46 (82%), Positives = 42/46 (91%)
Frame = +1
Query: 1 LSPINTNVFSPKNVDHPLLQASFGGLHSPGRMSPRSMEPISPMSSR 138
LSPI TNVFSPKNVDHPLLQASF G+ SPGRMSPR +EP+SP+SSR
Sbjct: 547 LSPIKTNVFSPKNVDHPLLQASF-GVSSPGRMSPRGIEPLSPLSSR 591
Score = 73.6 bits (179), Expect(3) = 2e-50
Identities = 32/45 (71%), Positives = 37/45 (82%)
Frame = +3
Query: 231 SSRDLGSNMSGLVGSPVNSWSKWGSPNGKLDWAVHGDELGPQRKT 365
SSRDLGSN +G+V SP NSWSKW SPNGK+DW+V G+EL RKT
Sbjct: 609 SSRDLGSNGAGIVNSPANSWSKWESPNGKIDWSVQGEELAWHRKT 653
>emb|CAN74402.1| hypothetical protein VITISV_043632 [Vitis vinifera]
Length = 718
Score = 94.4 bits (233), Expect(3) = 2e-50
Identities = 44/63 (69%), Positives = 53/63 (84%)
Frame = +2
Query: 464 PDLSWVQSLVKESPPEIKEKPVVPTSAVTPPGENSNSKAQIESLDHAVLGAWLEQMQLDQ 643
PDLSWVQSLVKESPP I+E P +P S +T + SNS ++I+S+DHAVLGAWLEQMQLDQ
Sbjct: 656 PDLSWVQSLVKESPPGIQETPTLPVSGMTVSADGSNSISRIDSIDHAVLGAWLEQMQLDQ 715
Query: 644 LVA 652
+VA
Sbjct: 716 IVA 718
Score = 78.6 bits (192), Expect(3) = 2e-50
Identities = 38/46 (82%), Positives = 42/46 (91%)
Frame = +1
Query: 1 LSPINTNVFSPKNVDHPLLQASFGGLHSPGRMSPRSMEPISPMSSR 138
LSPI TNVFSPKNVDHPLLQASF G+ SPGRMSPR +EP+SP+SSR
Sbjct: 540 LSPIKTNVFSPKNVDHPLLQASF-GVSSPGRMSPRGIEPLSPLSSR 584
Score = 73.6 bits (179), Expect(3) = 2e-50
Identities = 32/45 (71%), Positives = 37/45 (82%)
Frame = +3
Query: 231 SSRDLGSNMSGLVGSPVNSWSKWGSPNGKLDWAVHGDELGPQRKT 365
SSRDLGSN +G+V SP NSWSKW SPNGK+DW+V G+EL RKT
Sbjct: 602 SSRDLGSNGAGIVNSPANSWSKWESPNGKIDWSVQGEELAWHRKT 646
>ref|XP_002277747.2| PREDICTED: zinc finger CCCH domain-containing protein 30-like
[Vitis vinifera]
Length = 703
Score = 99.8 bits (247), Expect(3) = 8e-50
Identities = 52/76 (68%), Positives = 59/76 (77%), Gaps = 3/76 (3%)
Frame = +2
Query: 434 FETGNNGGDEPDLSWVQSLVKESPPEIKEK---PVVPTSAVTPPGENSNSKAQIESLDHA 604
FE GNNG +EPDLSWVQSLVKESP E KEK P + T+ + + SN +QIES+DHA
Sbjct: 628 FELGNNG-EEPDLSWVQSLVKESPTETKEKAATPALDTAEASSSSDGSNLNSQIESIDHA 686
Query: 605 VLGAWLEQMQLDQLVA 652
VLGAWLEQMQLDQLVA
Sbjct: 687 VLGAWLEQMQLDQLVA 702
Score = 75.5 bits (184), Expect(3) = 8e-50
Identities = 43/52 (82%), Positives = 45/52 (86%), Gaps = 1/52 (1%)
Frame = +1
Query: 1 LSPINTNVFSPKNVDHPLLQASFGGLHSPGRMSPRSMEPISPMSSRA-VFSQ 153
LSPINTN FSPKNVDHPLLQASF S GRMSPRSMEPISPMSSRA +F+Q
Sbjct: 521 LSPINTN-FSPKNVDHPLLQASFA---SSGRMSPRSMEPISPMSSRASMFAQ 568
Score = 69.3 bits (168), Expect(3) = 8e-50
Identities = 30/45 (66%), Positives = 37/45 (82%)
Frame = +3
Query: 231 SSRDLGSNMSGLVGSPVNSWSKWGSPNGKLDWAVHGDELGPQRKT 365
SSRDLGSN S +VGSP+NSWSKWGS N K DWA++ +ELG R++
Sbjct: 581 SSRDLGSNSSAIVGSPINSWSKWGSSNVKPDWAMNANELGGHRRS 625