BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00008076
         (1556 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB10338.1| hypothetical protein [Arabidopsis thaliana] gi|7...    97   9e-18
gb|AAD37019.2| putative non-LTR retrolelement reverse transcript...    96   3e-17
dbj|BAB01940.1| non-LTR retrolelement reverse transcriptase-like...    94   8e-17
ref|NP_178215.1| zinc ion binding / nucleic acid binding [Arabid...    94   1e-16
emb|CCA65996.1| hypothetical protein [Beta vulgaris subsp. vulga...    88   5e-15

>emb|CAB10338.1| hypothetical protein [Arabidopsis thaliana]
           gi|7268308|emb|CAB78602.1| hypothetical protein
           [Arabidopsis thaliana]
          Length = 655

 Score = 97.4 bits (241), Expect = 9e-18
 Identities = 64/247 (25%), Positives = 112/247 (45%), Gaps = 9/247 (3%)
 Frame = +1

Query: 274 DGYPMISFASQDMTKAIACLKNTLIIKFFFKKPSIDEIRISVRQTWGLKSEVIINVIDSK 453
           DG P+I+   + +       K  +++K   +  +I+ +   +R  W     + +  +  +
Sbjct: 73  DGEPVITIEKEVLDAMNGLYKQCMLVKILGRHTTIEVLSRKLRDLWRPTGGMSVLDLPRQ 132

Query: 454 HILLKFADEEDVVKALARKNPHIEGCRYKISRWSHQFDPTQDSA-LAPVWVEFYDLPYHL 630
             +++F  EED + AL      + G    +  WS +F+P +D     PVWV   +LP   
Sbjct: 133 FFMVRFEVEEDYMMALTGGPWRVLGSILMVQAWSPEFNPLRDVIETTPVWVRVANLPVTF 192

Query: 631 FNPGMLIPIASMIGKYLTIDQATLTMSTPLVARICVEIDLSKPLPSKLKITDPIYMDFWQ 810
           ++  +L+ IA+ +GK + +D  TL       AR+CVE++L  PL   L +    Y     
Sbjct: 193 YHNEILLGIAAGLGKPIKVDLTTLRKERGRFARVCVEVNLKNPLKGTLVVNGERYF---- 248

Query: 811 EVVYDKLPRYCTYCSLQGHNASDCRKLNPNGSATRG--------ELVHDTAHINHVGPST 966
            V Y+ L   C+ C + GH  ++C    P G  T+G        E+V   +  N  G + 
Sbjct: 249 -VSYEGLQTICSLCGIYGHTVNNC----PMGRTTQGSQRSEQGMEIVSSASTQNQDGFTE 303

Query: 967 HARKQNR 987
             R +NR
Sbjct: 304 VRRARNR 310


>gb|AAD37019.2| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 855

 Score = 95.9 bits (237), Expect = 3e-17
 Identities = 52/204 (25%), Positives = 97/204 (47%), Gaps = 1/204 (0%)
 Frame = +1

Query: 274 DGYPMISFASQDMTKAIACLKNTLIIKFFFKKPSIDEIRISVRQTWGLKSEVIINVIDSK 453
           DG  +I+   + +    +  K  +++K   +  SI  +   +R+ W  +  + +  +  +
Sbjct: 33  DGESVITIGREVLDVMNSMWKQCMVVKVLGRNISIANLNRRLREMWKPQGAMFVVDLPCQ 92

Query: 454 HILLKFADEEDVVKALARKNPHIEGCRYKISRWSHQFDPTQDS-ALAPVWVEFYDLPYHL 630
             +++F  E++ + AL        G    +  WS +FDP +D     P+WV   ++P  L
Sbjct: 93  FFMIRFEREDEYLSALTGGPWRAFGSYLLVQAWSPEFDPLRDEITTTPIWVRLMNIPLSL 152

Query: 631 FNPGMLIPIASMIGKYLTIDQATLTMSTPLVARICVEIDLSKPLPSKLKITDPIYMDFWQ 810
           ++  +L+ IA  +GK + +D  TL +     AR+C+E+DL+KPL   L +    Y     
Sbjct: 153 YHTSILMGIAGSLGKPVKVDMTTLHVERARFARMCIEVDLAKPLKGTLLLNGERYF---- 208

Query: 811 EVVYDKLPRYCTYCSLQGHNASDC 882
            V Y+ L   C+ C + GH    C
Sbjct: 209 -VSYEGLANICSRCGMYGHLIHTC 231


>dbj|BAB01940.1| non-LTR retrolelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 591

 Score = 94.4 bits (233), Expect = 8e-17
 Identities = 52/206 (25%), Positives = 94/206 (45%), Gaps = 1/206 (0%)
 Frame = +1

Query: 274 DGYPMISFASQDMTKAIACLKNTLIIKFFFKKPSIDEIRISVRQTWGLKSEVIINVIDSK 453
           DG P+I+   + +       K  + +K   +K S+  +   +R+ W     + +  +   
Sbjct: 58  DGEPVITIGQEVIDAMNGLWKQCMFVKVLGRKVSLAAVSHRLREMWKPSGAMYVLDLPRH 117

Query: 454 HILLKFADEEDVVKALARKNPHIEGCRYKISRWSHQFDPTQDSALA-PVWVEFYDLPYHL 630
             +++F  EE+ + AL        G    +  WS +F+P +D  +  P+WV   D+P   
Sbjct: 118 FFMVRFEKEEEFLTALTGGPWRAFGSCLLVKAWSPEFNPLKDEIVTTPIWVRIADMPVSF 177

Query: 631 FNPGMLIPIASMIGKYLTIDQATLTMSTPLVARICVEIDLSKPLPSKLKITDPIYMDFWQ 810
           ++  +L+ +A  +G+ L +D   L       AR+CVE+DL +PL   L +    Y     
Sbjct: 178 YHKSILMSVAQGLGRPLKVDLTMLHFERGRFARVCVEVDLKRPLQGALLVNGDRYY---- 233

Query: 811 EVVYDKLPRYCTYCSLQGHNASDCRK 888
            V Y+ L   C+ C + GH   +C K
Sbjct: 234 -VAYEGLTNICSKCGIYGHLVHNCPK 258


>ref|NP_178215.1| zinc ion binding / nucleic acid binding [Arabidopsis thaliana]
           gi|6598620|gb|AAF18653.1| hypothetical protein
           [Arabidopsis thaliana] gi|330250297|gb|AEC05391.1| zinc
           ion binding / nucleic acid binding protein [Arabidopsis
           thaliana]
          Length = 515

 Score = 94.0 bits (232), Expect = 1e-16
 Identities = 52/204 (25%), Positives = 97/204 (47%), Gaps = 1/204 (0%)
 Frame = +1

Query: 274 DGYPMISFASQDMTKAIACLKNTLIIKFFFKKPSIDEIRISVRQTWGLKSEVIINVIDSK 453
           D  P+I+   + +       K  +I+K    +  I  +   +R+ W     + +  +  +
Sbjct: 58  DEEPVITIGEEVLEAMNGLWKKCMIVKVLGSQIPISVLNRKLRELWKPSGVMTVMDLPRQ 117

Query: 454 HILLKFADEEDVVKALARKNPHIEGCRYKISRWSHQFDPTQDSALA-PVWVEFYDLPYHL 630
             +++F  EE+ + AL      + G    +  WS +FDP +D  +  PVWV   ++PY+ 
Sbjct: 118 FFMIRFELEEEYMAALTGGPWRVLGNYLLVQDWSSRFDPLRDDIVTTPVWVRLSNIPYNY 177

Query: 631 FNPGMLIPIASMIGKYLTIDQATLTMSTPLVARICVEIDLSKPLPSKLKITDPIYMDFWQ 810
           ++  +L+ IA  +G+ L +D  T+       AR+C+E++L+KPL   + I    Y     
Sbjct: 178 YHRCLLMEIARGLGRPLKVDMNTINFDKGRFARVCIEVNLAKPLKGTVLINGDRYF---- 233

Query: 811 EVVYDKLPRYCTYCSLQGHNASDC 882
            V Y+ L + C+ C + GH    C
Sbjct: 234 -VAYEGLSKICSSCGIYGHLVHSC 256


>emb|CCA65996.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 744

 Score = 88.2 bits (217), Expect = 5e-15
 Identities = 71/245 (28%), Positives = 107/245 (43%), Gaps = 8/245 (3%)
 Frame = +1

Query: 274 DGYPMISFASQDMTKAIACLKNTLIIKFFFKKPSIDEIRISVRQTWGLKSEVIINVIDSK 453
           D    +SF  + + K     +NTL+ K      S + +   V + W  K+   + VID  
Sbjct: 103 DSQLAVSFTKETLWKLREPWRNTLMGKVLGMSISRNFLVERVNRIW--KTNDKVEVIDLG 160

Query: 454 H--ILLKFADEEDVVKALARKNPHIEGCRYKISRWSHQFDPTQ---DSALAPVWVEFYDL 618
           H   L KF +  D+ KAL      I      ++RW   F P+Q   D  +  VW+ F +L
Sbjct: 161 HDVFLFKFNNGNDMEKALFGGPWFILNHYLMLTRWKPDFRPSQSVFDKIM--VWIRFPEL 218

Query: 619 PYHLFNPGMLIPIASMIGKYLTIDQATLTMSTPLVARICVEIDLSKPLPSKLKITDPIYM 798
           P   ++   L  IA  +GK + +D AT  M+    AR+C+E+DL+K L SK+ +      
Sbjct: 219 PLEYYDKEALFAIAGKVGKPIKVDYATDHMARGRYARVCIELDLAKALVSKVWVARA--- 275

Query: 799 DFWQEVVYDKLPRYCTYCSLQGHNASDCRKLNPNGSATRGELVHDTAHI---NHVGPSTH 969
             WQ V Y+ L   C  C   GH    C   +  G   R   V    H+   N +   +H
Sbjct: 276 --WQNVEYENLSLVCFLCGKIGHRRDQCS--HGLGEQNRKNEVKQQDHVMEENRLEKGSH 331

Query: 970 ARKQN 984
             + N
Sbjct: 332 GEESN 336