BLASTX nr result
ID: Coptis24_contig00008028
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00008028 (3958 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 892 0.0 emb|CBI34757.3| unnamed protein product [Vitis vinifera] 750 0.0 ref|XP_003516687.1| PREDICTED: DNA-directed RNA polymerase D sub... 779 0.0 gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest sub... 726 0.0 ref|NP_001182824.1| DNA dependent RNA polymerase D largest subun... 726 0.0 >ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit 1-like [Vitis vinifera] Length = 1560 Score = 892 bits (2305), Expect(2) = 0.0 Identities = 477/908 (52%), Positives = 627/908 (69%), Gaps = 69/908 (7%) Frame = +1 Query: 4 ASELALRVRDFLSVSKLYTEKSSNTDV---LSGLKWVKDVVLAKRTDNSFRMVVVGDPNV 174 A+EL+ RV D L SKL +EKS++ D +SGLKW+K+V+L KRT++SFRM+VVGDP + Sbjct: 307 ANELSCRVLDCLKTSKLRSEKSTSKDSASKMSGLKWIKEVLLGKRTNHSFRMIVVGDPKL 366 Query: 175 KLGEIGMPREICQKLIFPETLNEQNWEKLHDCCRLSILERGQFRARRKDDTIVLRNEDDL 354 +L EIG+P I ++L+ E LN NWEK+ + C L +LE+GQ RRK +R +D Sbjct: 367 RLSEIGIPCHIAEELLISEHLNSWNWEKVTNGCNLRLLEKGQTYVRRKGTLAPVRRMNDF 426 Query: 355 KIGDIVYRHLDEGDLLLLNRPPSIHQHSLIALSVRVLPMDSVVLLNPICCSPFRGDFDGD 534 + GDI+YR L +GD++L+NRPPSIHQHS+IALSV+VLP++SVV +NP+CCSPFRGDFDGD Sbjct: 427 QAGDIIYRPLTDGDIVLINRPPSIHQHSVIALSVKVLPLNSVVSINPLCCSPFRGDFDGD 486 Query: 535 CFHGYIPQSIKSRVELQELVCIDRQLVNGQNGRNLISLCHDSLSAAHLLREKGEFLNKVE 714 C HGYIPQS+ SRVEL ELV ++RQL+N Q+GRNL+SL DSLSAAHL+ E G LN + Sbjct: 487 CLHGYIPQSVDSRVELSELVALNRQLINRQSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQ 546 Query: 715 MQQLGMLCSRQLPYPAIVRATD-HNPIWTGNQLLSMLLPVSFDYS-SLSGVHISNGEIIS 888 MQQL M C QL PAI++A +WTG QL SMLLP F+Y L+GV IS+GE+IS Sbjct: 547 MQQLEMFCPYQLQSPAIIKAPLLDTQVWTGKQLFSMLLPPGFNYVFPLNGVRISDGELIS 606 Query: 889 AP-GSSWLQDTDGNLFISLVKLYGSKAVDIIFTIQEVLLEWISMRGFSVSLSDLFVSCDS 1065 + GS+WL+D DGNLF SLVK KA+D ++ QEVL EW+SMRG SVSLSD+++S DS Sbjct: 607 SSDGSAWLRDIDGNLFSSLVKDCQGKALDFLYAAQEVLCEWLSMRGLSVSLSDIYLSSDS 666 Query: 1066 YTWDKMTEEVRSGLQEAKK-------------------GLKN------------------ 1134 + M +EV GL A++ G N Sbjct: 667 ISRKNMIDEVFCGLLVAEQTCHFKQLLVDSSQNFLIGSGENNQNGVVPDVQSLWYERQGS 726 Query: 1135 -VLSKQSVCDFKGVFRDLQSLIYRYSSKDNSMLAMVKAGSKGSLPKLAQQCLTLGLQYSN 1311 L + SVC FK FRD+Q+L+Y+Y++KDNS+LAM+KAGSKG+L KL QQ L LGLQ+S Sbjct: 727 AALCQSSVCAFKQKFRDIQNLVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCLGLQHSL 786 Query: 1312 VPLSFSIP-------WD------------SSLSSSCHVAGVVESSFLAGLSPSECFLHSI 1434 VPLSF IP W+ S + S VVE+SFL GL+P ECF+HS+ Sbjct: 787 VPLSFKIPHQLSCAAWNKQKVPGLIQNDTSEYAESYIPYAVVENSFLMGLNPLECFVHSV 846 Query: 1435 SCRDSSFSENADVPGTLNRKLMFSMRDLYMAYDGTVRYSYGNQVVQFSYGV---SEDSSV 1605 + RDSSFS+NAD+PGTL R+LMF MRDLY+AYDGTVR +YGNQ+VQFSY + S S Sbjct: 847 TSRDSSFSDNADLPGTLTRRLMFFMRDLYIAYDGTVRNAYGNQLVQFSYNIEHTSTPSDG 906 Query: 1606 LTSGNSAHQLG-DPVGSLAACSISEAAYSALEKPISTFESSPLLNLKMLLDSSYKKTTVG 1782 + A+ +G PVGS++AC+ISEAAYSAL++PIS E SPLLNLK +L+ +K+T Sbjct: 907 INEDTCAYDMGGQPVGSISACAISEAAYSALDQPISLLEPSPLLNLKRVLECGLRKSTAD 966 Query: 1783 QTVSLFLSKKLERWLYGPEYGALTVRSHLERVLFSDIVSSVMIIFSHQRSCRPHTSPWVC 1962 +TVSLFLSKKLE+ +G EYGAL V++HLE++LFSDIVS+VMI+FS Q + H SPWVC Sbjct: 967 RTVSLFLSKKLEKRKHGFEYGALEVKNHLEKLLFSDIVSTVMIVFSPQNGSKTHFSPWVC 1026 Query: 1963 HFHLHQGKMKKIGLDVQSIINALHQECDSTRQTLKVELPKLHILTRICSATNAQNEKDED 2142 HFH+ + KK L SII+AL+ +C+S R K+ LP L I ++ C + + E + Sbjct: 1027 HFHVCEEIAKKRSLKPHSIIDALYMKCNSARAESKINLPDLQITSKDC-FVDMEKEDSDC 1085 Query: 2143 ICITVEAEVSRNSLLVMDTFRHTVIPFLLGTVIKGFMEFKKVDILWSESNISD--KASRG 2316 CITV S+ S + +DT R VIPFLLG V+KG ++ KKVDILW+++ SD K+S G Sbjct: 1086 FCITVSIVNSKKSCIQLDTVRDLVIPFLLGAVVKGLLDVKKVDILWNDNPDSDVLKSSSG 1145 Query: 2317 ELYMKVHLYEHCKSGTGWSLVVNKCLRIMDLIDWNRSHPDSMHDLFCTYGIDCSWEYFLR 2496 LY++V++ C W ++++ CL+IMD+IDW RSHPD++HD+F YGID W+YFL Sbjct: 1146 RLYLRVYVSGDCGKKNFWGVLMDACLQIMDMIDWERSHPDNIHDIFVVYGIDAGWKYFLN 1205 Query: 2497 NLKVAVSD 2520 +LK A+SD Sbjct: 1206 SLKSAISD 1213 Score = 219 bits (558), Expect(2) = 0.0 Identities = 118/256 (46%), Positives = 151/256 (58%), Gaps = 11/256 (4%) Frame = +2 Query: 2519 IGKSILPEHLLLVADCLTVTGQFIGLNAKGIAKQRDLVSVPSPFTQACFSSPGPCFIKAA 2698 IGK++LPEHLLLVA CL+ TG+F+GLNAKG+A+Q++L S+ SPF Q CFSSPG CFIKA Sbjct: 1214 IGKTVLPEHLLLVASCLSATGEFVGLNAKGMARQKELTSISSPFMQGCFSSPGSCFIKAG 1273 Query: 2699 KYGAEDGLLGVLNAAAWGKEVPLGTGGQFDIIYSGKVHEFSETLDIYNTLSGHLCPERQN 2878 K D L G L+A AWGK +G+GG FDI+YS K HE + DIY L QN Sbjct: 1274 KRAVADNLHGSLDALAWGKIPSVGSGGHFDILYSAKGHELARPEDIYKLLGSQTSCHEQN 1333 Query: 2879 VKISVPPTTQKWMSGKGDTDVLQTFDSFIGKGPNNLK-----------GLSDLVMLHKNL 3025 +K+ VP T + + G V DS KG +L+ L+D+ L + L Sbjct: 1334 LKVKVPITCYQTTTKCGAQLVYANGDS-ASKGCKSLEKISKSVLRSFLSLNDIQKLSRRL 1392 Query: 3026 QEILHRYPVNDFLNEKDKSILTSALSYHPRSXXXXXXXXXXXXXXXHQKYKYSHCFILVR 3205 + IL +YP+N L+E DK+ L AL +HPR H KY + CF LVR Sbjct: 1393 KFILQKYPINHQLSEIDKTTLMMALYFHPRRDEKIGPGAQNIKVRYHSKYHNTRCFSLVR 1452 Query: 3206 KDGSEDDFSYRKCVRG 3253 DG+E+DFSY KCV G Sbjct: 1453 TDGTEEDFSYHKCVHG 1468 >emb|CBI34757.3| unnamed protein product [Vitis vinifera] Length = 1359 Score = 750 bits (1937), Expect(2) = 0.0 Identities = 410/836 (49%), Positives = 550/836 (65%), Gaps = 24/836 (2%) Frame = +1 Query: 85 LSGLKWVKDVVLAKRTDNSFRMVVVGDPNVKLGEIGMPREICQKLIFPETLNEQNWEKLH 264 +SGLKW+K+V+L KRT++SFRM+VVGDP ++L EIG+P I ++L+ E LN NWEK+ Sbjct: 280 MSGLKWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLISEHLNSWNWEKVT 339 Query: 265 DCCRLSILERGQFRARRKDDTIVLRNEDDLKIGDIVYRHLDEGDLLLLNRPPSIHQHSLI 444 + C L +LE+GQ RRK +R +D + GDI+YR L +GD++L+NRPPSIHQHS+I Sbjct: 340 NGCNLRLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDGDIVLINRPPSIHQHSVI 399 Query: 445 ALSVRVLPMDSVVLLNPICCSPFRGDFDGDCFHGYIPQSIKSRVELQELVCIDRQLVNGQ 624 ALSV+VLP++SVV +NP+CCSPFRGDFDGDC HGYIPQS+ SRVEL ELV ++RQL+N Q Sbjct: 400 ALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSELVALNRQLINRQ 459 Query: 625 NGRNLISLCHDSLSAAHLLREKGEFLNKVEMQQLGMLCSRQLPYPAIVRATDHNPIWTGN 804 +GRNL+SL DSLSAAHL+ E G LN +MQQL M C QL PAI++A + W Sbjct: 460 SGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLEMFCPYQLQSPAIIKAPLLDTQWLSM 519 Query: 805 QLLSMLLPVSFDYSSLSGVHISNGEIISAPGSSWLQDTDGNLFISLVKLYGSKAVDIIFT 984 + LS+ SLS +++S+ I +D +F Sbjct: 520 RGLSV---------SLSDIYLSSDSISR-----------------------KNMIDEVFC 547 Query: 985 IQEVLLEWISMRGFSVSLSDLF-VSCDSYTWDKMTEEVRSGLQEAKKGLKNVLSKQSVCD 1161 V + + V S F + + + +V+S L ++G L + SVC Sbjct: 548 GLLVAEQTCHFKQLLVDSSQNFLIGSGENNQNGVVPDVQS-LWYERQG-SAALCQSSVCA 605 Query: 1162 FKGVFRDLQSLIYRYSSKDNSMLAMVKAGSKGSLPKLAQQCLTLGLQYSNVPLSFSIP-- 1335 FK FRD+Q+L+Y+Y++KDNS+LAM+KAGSKG+L KL QQ L LGLQ+S VPLSF IP Sbjct: 606 FKQKFRDIQNLVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCLGLQHSLVPLSFKIPHQ 665 Query: 1336 -----WD------------SSLSSSCHVAGVVESSFLAGLSPSECFLHSISCRDSSFSEN 1464 W+ S + S VVE+SFL GL+P ECF+HS++ RDSSFS+N Sbjct: 666 LSCAAWNKQKVPGLIQNDTSEYAESYIPYAVVENSFLMGLNPLECFVHSVTSRDSSFSDN 725 Query: 1465 ADVPGTLNRKLMFSMRDLYMAYDGTVRYSYGNQVVQFSYGV---SEDSSVLTSGNSAHQL 1635 AD+PGTL R+LMF MRDLY+AYDGTVR +YGNQ+VQFSY + S S + A+ + Sbjct: 726 ADLPGTLTRRLMFFMRDLYIAYDGTVRNAYGNQLVQFSYNIEHTSTPSDGINEDTCAYDM 785 Query: 1636 -GDPVGSLAACSISEAAYSALEKPISTFESSPLLNLKMLLDSSYKKTTVGQTVSLFLSKK 1812 G PVGS++AC+ISEAAYSAL++PIS E SPLLNLK +L+ +K+T +TVSLFLSKK Sbjct: 786 GGQPVGSISACAISEAAYSALDQPISLLEPSPLLNLKRVLECGLRKSTADRTVSLFLSKK 845 Query: 1813 LERWLYGPEYGALTVRSHLERVLFSDIVSSVMIIFSHQRSCRPHTSPWVCHFHLHQGKMK 1992 LE+ +G EYGAL V++HLE++LFSDIVS+VMI+FS Q + H SPWVCHFH+ + K Sbjct: 846 LEKRKHGFEYGALEVKNHLEKLLFSDIVSTVMIVFSPQNGSKTHFSPWVCHFHVCEEIAK 905 Query: 1993 KIGLDVQSIINALHQECDSTRQTLKVELPKLHILTRICSATNAQNEKDEDICITVEAEVS 2172 K L SII+AL+ +C+S R K+ LP L I ++ C + + E + CITV S Sbjct: 906 KRSLKPHSIIDALYMKCNSARAESKINLPDLQITSKDC-FVDMEKEDSDCFCITVSIVNS 964 Query: 2173 RNSLLVMDTFRHTVIPFLLGTVIKGFMEFKKVDILWSESNISDKASRGELYMKVHLYEHC 2352 + S + +DT R VIPFLLG V+KG K D+L K+S G LY++V++ C Sbjct: 965 KKSCIQLDTVRDLVIPFLLGAVVKGCC-IKNSDVL--------KSSSGRLYLRVYVSGDC 1015 Query: 2353 KSGTGWSLVVNKCLRIMDLIDWNRSHPDSMHDLFCTYGIDCSWEYFLRNLKVAVSD 2520 W ++++ CL+IMD+IDW RSHPD++HD+F YGID W+YFL +LK A+SD Sbjct: 1016 GKKNFWGVLMDACLQIMDMIDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISD 1071 Score = 219 bits (558), Expect(2) = 0.0 Identities = 118/256 (46%), Positives = 151/256 (58%), Gaps = 11/256 (4%) Frame = +2 Query: 2519 IGKSILPEHLLLVADCLTVTGQFIGLNAKGIAKQRDLVSVPSPFTQACFSSPGPCFIKAA 2698 IGK++LPEHLLLVA CL+ TG+F+GLNAKG+A+Q++L S+ SPF Q CFSSPG CFIKA Sbjct: 1072 IGKTVLPEHLLLVASCLSATGEFVGLNAKGMARQKELTSISSPFMQGCFSSPGSCFIKAG 1131 Query: 2699 KYGAEDGLLGVLNAAAWGKEVPLGTGGQFDIIYSGKVHEFSETLDIYNTLSGHLCPERQN 2878 K D L G L+A AWGK +G+GG FDI+YS K HE + DIY L QN Sbjct: 1132 KRAVADNLHGSLDALAWGKIPSVGSGGHFDILYSAKGHELARPEDIYKLLGSQTSCHEQN 1191 Query: 2879 VKISVPPTTQKWMSGKGDTDVLQTFDSFIGKGPNNLK-----------GLSDLVMLHKNL 3025 +K+ VP T + + G V DS KG +L+ L+D+ L + L Sbjct: 1192 LKVKVPITCYQTTTKCGAQLVYANGDS-ASKGCKSLEKISKSVLRSFLSLNDIQKLSRRL 1250 Query: 3026 QEILHRYPVNDFLNEKDKSILTSALSYHPRSXXXXXXXXXXXXXXXHQKYKYSHCFILVR 3205 + IL +YP+N L+E DK+ L AL +HPR H KY + CF LVR Sbjct: 1251 KFILQKYPINHQLSEIDKTTLMMALYFHPRRDEKIGPGAQNIKVRYHSKYHNTRCFSLVR 1310 Query: 3206 KDGSEDDFSYRKCVRG 3253 DG+E+DFSY KCV G Sbjct: 1311 TDGTEEDFSYHKCVHG 1326 >ref|XP_003516687.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Glycine max] Length = 1622 Score = 779 bits (2011), Expect(2) = 0.0 Identities = 442/929 (47%), Positives = 594/929 (63%), Gaps = 90/929 (9%) Frame = +1 Query: 4 ASELALRVRDFLSVSKLYTEKSSNT---DVL-----------SGLKWVKDVVLAKRTDNS 141 A+EL+ RV D L +SKL +K+ N+ D+ SGL+W+KDVVL KR D+S Sbjct: 259 ANELSSRVLDCLRISKLNPDKTPNSIFADIQQRKIGENAFNSSGLRWIKDVVLGKRNDSS 318 Query: 142 FRMVVVGDPNVKLGEIGMPREICQKLIFPETLNEQNWEKLHDCCRLSILERGQFRARRKD 321 FR VVVGDP+++L EIG+P I + L E +N QN EKL CC L +LE+G+ RK Sbjct: 319 FRTVVVGDPDLELSEIGIPCHIAESLQVSEYVNRQNREKLLYCCELHLLEKGKINVCRKG 378 Query: 322 DTIVLRNEDDLKIGDIVYRHLDEGDLLLLNRPPSIHQHSLIALSVRVLPMDSVVLLNPIC 501 + L ++DL+IGD YR L +GD +L+NRPPSIHQHS+I+L+VRVLP+ SVV +NP+C Sbjct: 379 SIVHLYKKEDLQIGDKFYRPLADGDKVLINRPPSIHQHSMISLTVRVLPISSVVCINPLC 438 Query: 502 CSPFRGDFDGDCFHGYIPQSIKSRVELQELVCIDRQLVNGQNGRNLISLCHDSLSAAHLL 681 CSP RGDFDGDC HGYIPQS+ +R+EL ELV +DRQL+NGQ+GRNL+SL DSL+AA+LL Sbjct: 439 CSPLRGDFDGDCLHGYIPQSVTARIELNELVALDRQLINGQSGRNLLSLSQDSLTAAYLL 498 Query: 682 REKGEFLNKVEMQQLGMLC--SRQLPYPAIVRATDHNP-IWTGNQLLSMLLPVSFDYSSL 852 E G LN +MQQL ML +++L PA+V+A N +W G QL SMLLP FDYS Sbjct: 499 MEDGVLLNVYQMQQLQMLSISNKRLIPPAVVKAPSSNSSLWNGKQLFSMLLPYDFDYSFP 558 Query: 853 S-GVHISNGEIISAP-GSSWLQDTDGNLFISLVKLYGSKAVDIIFTIQEVLLEWISMRGF 1026 S GV +S+GE++S+ S WL+D+D N+F SLV+ Y K ++ ++ Q+VL EW+SM GF Sbjct: 559 SDGVVVSDGELVSSSEASGWLRDSDYNVFQSLVEHYQGKTLNFLYAAQKVLCEWLSMTGF 618 Query: 1027 SVSLSDLFVSCDSYTWDKMTEEVRSGLQEAKKG--------------------------- 1125 SVSLSDL++S DSY + M EE+ GLQ+A++ Sbjct: 619 SVSLSDLYLSSDSYARENMIEEIFYGLQDAERACNFKQLLLDYYCDFLSGSLQESENAIT 678 Query: 1126 -----------LKNVLSKQSVCDFKGVFRDLQSLIYRYSSKDNSMLAMVKAGSKGSLPKL 1272 + LS+ SV F+ VFR++QSL +Y+ K NS LAM KAGSKG+L KL Sbjct: 679 VNADRLNYERQISASLSQASVDAFRQVFRNIQSLADKYACKGNSFLAMFKAGSKGNLLKL 738 Query: 1273 AQQCLTLGLQYSNVPLSFSIP------------WDSSLSSSCHVA---------GVVESS 1389 Q + LG+Q S V LS+ +P W S+ S VVESS Sbjct: 739 VQHSMCLGMQNSLVRLSYRLPRHLSCADWNSQKWVDSIQMSSGTLESVQSYIPYAVVESS 798 Query: 1390 FLAGLSPSECFLHSISCRDSSFSENADVPGTLNRKLMFSMRDLYMAYDGTVRYSYGNQVV 1569 FL GL+P ECF+HS++ RDSSFS++AD+PGTL R+LMF MRDLY AYDGTVR YGNQ++ Sbjct: 799 FLTGLNPLECFVHSVTNRDSSFSDHADLPGTLTRRLMFFMRDLYDAYDGTVRNLYGNQLI 858 Query: 1570 QFSYGVSEDSSVLTSGNSAHQLGDPVGSLAACSISEAAYSALEKPISTFESSPLLNLKML 1749 QFSY + EDSS G+ VG+++AC+ISEAAYSAL +P+S E+SPLLNLK + Sbjct: 859 QFSYDIEEDSSCNKGFQQYALGGESVGAISACAISEAAYSALGQPVSLLETSPLLNLKNV 918 Query: 1750 LDSSYKKTTVGQTVSLFLSKKLERWLYGPEYGALTVRSHLERVLFSDIVSSVMIIFS-HQ 1926 L+ +K QTVSLFLS+KL + +G EY AL V+++LER+LFS+IVS VMIIF+ H Sbjct: 919 LECGSRKRNGDQTVSLFLSEKLGKQRHGFEYAALEVKNYLERLLFSNIVSKVMIIFTPHD 978 Query: 1927 RSCRPHTSPWVCHFHLHQGKMKKIGLDVQSIINALHQECDSTRQTLKVELPKLHILTRIC 2106 + SPWVCHFHL + + + L V SII++L+Q S R+ KV L I +R C Sbjct: 979 SRSQEKYSPWVCHFHLDKEIVTRRKLKVHSIIDSLYQRYYSQRKDSKVCFTNLKISSRKC 1038 Query: 2107 SATNAQNEKDE--------DICITVEAEVSRNSLLVMDTFRHTVIPFLLGTVIKGFMEFK 2262 SA + E ++ D CI V + + + +D+ R VIPFLLGT I+GF++ K Sbjct: 1039 SADSMVKEGEDTSIDKEEGDDCIMVTIVENSKNPIQLDSVRDLVIPFLLGTAIQGFLDVK 1098 Query: 2263 KVDILW-SESNISDKAS--RGELYMKVHLYEHCKSGTGWSLVVNKCLRIMDLIDWNRSHP 2433 KVDILW ++S +++ + GELY++V L G W +++ C +IM +IDW RSH Sbjct: 1099 KVDILWNNQSKVTNSRNGFSGELYLRVTLSSEGSRGRFWGVLLKLCHKIMHIIDWTRSHT 1158 Query: 2434 DSMHDLFCTYGIDCSWEYFLRNLKVAVSD 2520 D+++ YGID W+YF +L A SD Sbjct: 1159 DNINHFSSAYGIDAGWQYFFNSLACATSD 1187 Score = 186 bits (472), Expect(2) = 0.0 Identities = 101/250 (40%), Positives = 146/250 (58%), Gaps = 6/250 (2%) Frame = +2 Query: 2522 GKSILPEHLLLVADCLTVTGQFIGLNAKGIAKQRDLVSVPSPFTQACFSSPGPCFIKAAK 2701 GKSILP+HL LVA+ L+ +G+F+GLNAKG+A QR SV SPF QACF++PG CFIKAAK Sbjct: 1189 GKSILPKHLCLVANSLSCSGEFVGLNAKGMALQRKHASVSSPFVQACFANPGSCFIKAAK 1248 Query: 2702 YGAEDGLLGVLNAAAWGKEVPLGTGGQFDIIYSGKVHEFSETLDIYNTLSGHLCPERQNV 2881 GA D L G L+ AWG + +GT G FD+IYS K H+ ++++D+Y L ++ N Sbjct: 1249 SGATDNLQGSLDGLAWGNCLSMGTSGMFDVIYSEKGHQVAKSVDVYELLEASF--DKPNN 1306 Query: 2882 KISVPPTTQKWMSGKGDTDVLQTFDSFIGKGP------NNLKGLSDLVMLHKNLQEILHR 3043 KI K+ S K ++ + +G N ++D+ L + IL++ Sbjct: 1307 KIGT--HLHKYSSDKCGSEFRHKNGYALKEGKQWKTILRNFVTVNDIQKLTFASRCILNK 1364 Query: 3044 YPVNDFLNEKDKSILTSALSYHPRSXXXXXXXXXXXXXXXHQKYKYSHCFILVRKDGSED 3223 Y +++ L+E D+S + L++HP H KYK S CF ++R DG+ + Sbjct: 1365 YSIDELLSESDRSTMLRVLNFHPHKSEKFGIGPQDIKVGWHPKYKDSRCFHIIRTDGTVE 1424 Query: 3224 DFSYRKCVRG 3253 DFSYRKC+ G Sbjct: 1425 DFSYRKCILG 1434 >gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest subunit rpd1-8 [Zea mays] Length = 1444 Score = 726 bits (1873), Expect(2) = 0.0 Identities = 401/899 (44%), Positives = 562/899 (62%), Gaps = 60/899 (6%) Frame = +1 Query: 4 ASELALRVRDFLSVSKLYTEKS---SNTDVLSGLKWVKDVVLAKRTDNSFRMVVVGDPNV 174 +S ++ RV + L SKLY++K+ ++TD G+KW+KDVVL+KR+DN FR ++VGDP + Sbjct: 292 SSLVSSRVSECLKSSKLYSKKADGETSTDTY-GMKWLKDVVLSKRSDNVFRSIMVGDPKI 350 Query: 175 KLGEIGMPREICQKLIFPETLNEQNWEKLHDCCRLSILERGQFRARRKDDTIVLRNEDDL 354 KL EIG+P ++ L+ E ++ N++ + C L +L + + RR + LR D L Sbjct: 351 KLWEIGIPEDLSSSLVVSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNGKLMFLRKADQL 410 Query: 355 KIGDIVYRHLDEGDLLLLNRPPSIHQHSLIALSVRVLPMDSVVLLNPICCSPFRGDFDGD 534 +IGDI YR L +GD++L+NRPPS+HQHSLIALS ++LP+ SVV +NP+CC+PF GDFDGD Sbjct: 411 EIGDIAYRPLQDGDIILINRPPSVHQHSLIALSAKILPIHSVVSINPLCCTPFAGDFDGD 470 Query: 535 CFHGYIPQSIKSRVELQELVCIDRQLVNGQNGRNLISLCHDSLSAAHLLREKGEFLNKVE 714 C HGYIPQSI+SRVEL+ELV + QL+N Q+GRNL+SL HDSL+AAHLL FL K E Sbjct: 471 CLHGYIPQSIRSRVELEELVSLHNQLLNMQDGRNLVSLTHDSLAAAHLLTSTDVFLKKSE 530 Query: 715 MQQLGMLC-SRQLPYPAIVRATD-HNPIWTGNQLLSMLLPVSFDYSSLSGVHISNGEIIS 888 +QQL MLC S P PA++++ + +WTG QL SMLLP ++S + +HI + E+++ Sbjct: 531 LQQLQMLCLSVSTPAPAVIKSMNFQGSLWTGKQLFSMLLPSGMNFSCDTELHIMDSEVLT 590 Query: 889 AP-GSSWLQDTDGNLFISLVKLYGSKAVDIIFTIQEVLLEWISMRGFSVSLSDLFVSCDS 1065 GSSWLQ+ LF + K YG KA+D + + QEVL E+++MRG SVSLSDL++ D Sbjct: 591 CSLGSSWLQNNTSGLFSVMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDH 650 Query: 1066 YTWDKMTEEVRSGLQEAKKGLK---------------------NVLSKQSVC-------- 1158 Y+ K+ E V+ L EA++ + +V +QS C Sbjct: 651 YSRRKLAEGVKLALYEAEEAFRVKKILLDPINIPVLKCHDETEDVTYRQSDCIQSNPSVI 710 Query: 1159 -----DFKGVFRDLQSLIYRYSSKDNSMLAMVKAGSKGSLPKLAQQCLTLGLQYSNVPLS 1323 FK VFRDL ++ ++ S DNSM+ M+ AGSKGS+ K AQQ +GLQ Sbjct: 711 RSSIMAFKDVFRDLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTACIGLQLPASKFP 770 Query: 1324 FSIP-------WDSSLS-------SSCHVAG-----VVESSFLAGLSPSECFLHSISCRD 1446 F IP W+ S +S V G V+++SF+ GL+P EC LH+IS R Sbjct: 771 FRIPSQLSCISWNGQKSLNYEAESTSERVGGQNLYAVIKNSFIEGLNPLECLLHAISGRA 830 Query: 1447 SSFSENADVPGTLNRKLMFSMRDLYMAYDGTVRYSYGNQVVQFSYGVSEDSSVLTSGNSA 1626 + FSENADVPGTL RKLM+ +RD+++AYDGTVR SYG Q+VQFSY +D Sbjct: 831 NFFSENADVPGTLTRKLMYHLRDIHVAYDGTVRSSYGQQIVQFSYDSVDD--------LV 882 Query: 1627 HQLGDPVGSLAACSISEAAYSALEKPISTFESSPLLNLKMLLDSSYKKTTVGQTVS-LFL 1803 +LG PVG AACSISEAAY ALE P++ E SPL+NL+ + +K T G + LFL Sbjct: 883 DKLGAPVGCRAACSISEAAYGALEHPVNGLEDSPLMNLQEVF-KCHKATNSGDHIGLLFL 941 Query: 1804 SKKLERWLYGPEYGALTVRSHLERVLFSDIVSSVMIIFSHQRSCRPHTSPWVCHFHLHQG 1983 S+ L+++ YG EY +L V++HLERV FSD+V ++MII+ R + W HFH+++ Sbjct: 942 SRHLKKYRYGLEYASLEVKNHLERVNFSDLVETIMIIYDGHDKIR-NEGMWTTHFHINKA 1000 Query: 1984 KMKKIGLDVQSIINALHQECDSTRQTLKVELPKLHILTRICSATNAQNEKDEDICITVEA 2163 MKK L ++ +++ L +E D+TR L +P + I R C + K CI V A Sbjct: 1001 MMKKKRLGLRFVVDELAKEYDTTRDQLNNAIPSIRISRRKC-LVGDEGVKSSSCCIAVVA 1059 Query: 2164 EVSRNSLLVMDTFRHTVIPFLLGTVIKGFMEFKKVDILWSESNISDKASRGELYMKVHLY 2343 RNS+ +DT + VIP +L T++KGF+EFK V+I GEL +KV + Sbjct: 1060 HAERNSISQLDTIKTRVIPSILDTLLKGFLEFKDVEIQCPHD--------GELLVKVCMS 1111 Query: 2344 EHCKSGTGWSLVVNKCLRIMDLIDWNRSHPDSMHDLFCTYGIDCSWEYFLRNLKVAVSD 2520 EHCK G W + N C+ +M+LIDW S P ++ D+FC+YGID +W+YF+ +LK A +D Sbjct: 1112 EHCKGGRFWPTLQNACIPVMELIDWELSQPSNVSDIFCSYGIDSAWKYFVESLKSATTD 1170 Score = 158 bits (400), Expect(2) = 0.0 Identities = 96/262 (36%), Positives = 142/262 (54%), Gaps = 12/262 (4%) Frame = +2 Query: 2522 GKSILPEHLLLVADCLTVTGQFIGLNAKGIAKQRDLVSVPSPFTQACFSSPGPCFIKAAK 2701 G++I EHLL++AD L+VTGQF L+++G+ +QR +S+ SPF++ACFS P FI AAK Sbjct: 1172 GRNIRREHLLVIADSLSVTGQFHALSSQGLKQQRTRLSISSPFSEACFSRPAQSFINAAK 1231 Query: 2702 YGAEDGLLGVLNAAAWGKEVPLGTGGQFDIIYSGKVHEFSETLDIYNTL---------SG 2854 + D L G L+A AWGKE GT G F+I++SGK HE + IY+ L Sbjct: 1232 QCSVDNLCGSLDAVAWGKEPFNGTSGPFEIMHSGKPHEPEQNESIYDFLCSSKVRNFEKN 1291 Query: 2855 HLCPERQNVKISVPPTTQKWMSGKGDT---DVLQTFDSFIGKGPNNLKGLSDLVMLHKNL 3025 HL RQ+ + + S KG T V T D ++ +++ + +L Sbjct: 1292 HLDTRRQSTE-NASICRLACKSSKGSTTVNGVAITIDQDFLHAKVSI--WDNIIDMRTSL 1348 Query: 3026 QEILHRYPVNDFLNEKDKSILTSALSYHPRSXXXXXXXXXXXXXXXHQKYKYSHCFILVR 3205 Q +L YP+N ++ E DKS L AL +H R + + + CFIL+R Sbjct: 1349 QNMLREYPLNGYVAEPDKSQLIEALKFHSRGAEKIGVGVREIKIGLNPSHPGTRCFILLR 1408 Query: 3206 KDGSEDDFSYRKCVRGFAKTLA 3271 D + +DFSY KCV+G A +++ Sbjct: 1409 NDDTTEDFSYHKCVQGAADSIS 1430 >ref|NP_001182824.1| DNA dependent RNA polymerase D largest subunit [Zea mays] gi|219662980|gb|ACL30979.1| DNA dependent RNA polymerase D largest subunit [Zea mays] gi|414869425|tpg|DAA47982.1| TPA: putative DNA dependent RNA polymerase D largest subunit family protein [Zea mays] gi|414869426|tpg|DAA47983.1| TPA: putative DNA dependent RNA polymerase D largest subunit family protein [Zea mays] Length = 1444 Score = 726 bits (1873), Expect(2) = 0.0 Identities = 401/899 (44%), Positives = 562/899 (62%), Gaps = 60/899 (6%) Frame = +1 Query: 4 ASELALRVRDFLSVSKLYTEKS---SNTDVLSGLKWVKDVVLAKRTDNSFRMVVVGDPNV 174 +S ++ RV + L SKLY++K+ ++TD G+KW+KDVVL+KR+DN FR ++VGDP + Sbjct: 292 SSLVSSRVSECLKSSKLYSKKADGETSTDTY-GMKWLKDVVLSKRSDNVFRSIMVGDPKI 350 Query: 175 KLGEIGMPREICQKLIFPETLNEQNWEKLHDCCRLSILERGQFRARRKDDTIVLRNEDDL 354 KL EIG+P ++ L+ E ++ N++ + C L +L + + RR + LR D L Sbjct: 351 KLWEIGIPEDLSSSLVVSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNGKLMFLRKADQL 410 Query: 355 KIGDIVYRHLDEGDLLLLNRPPSIHQHSLIALSVRVLPMDSVVLLNPICCSPFRGDFDGD 534 +IGDI YR L +GD++L+NRPPS+HQHSLIALS ++LP+ SVV +NP+CC+PF GDFDGD Sbjct: 411 EIGDIAYRPLQDGDIILINRPPSVHQHSLIALSAKILPIHSVVSINPLCCTPFAGDFDGD 470 Query: 535 CFHGYIPQSIKSRVELQELVCIDRQLVNGQNGRNLISLCHDSLSAAHLLREKGEFLNKVE 714 C HGYIPQSI+SRVEL+ELV + QL+N Q+GRNL+SL HDSL+AAHLL FL K E Sbjct: 471 CLHGYIPQSIRSRVELEELVSLHNQLLNMQDGRNLVSLTHDSLAAAHLLTSTDVFLKKSE 530 Query: 715 MQQLGMLC-SRQLPYPAIVRATD-HNPIWTGNQLLSMLLPVSFDYSSLSGVHISNGEIIS 888 +QQL MLC S P PA++++ + +WTG QL SMLLP ++S + +HI + E+++ Sbjct: 531 LQQLQMLCLSVSTPAPAVIKSMNFQGSLWTGKQLFSMLLPSGMNFSCDTELHIMDSEVLT 590 Query: 889 AP-GSSWLQDTDGNLFISLVKLYGSKAVDIIFTIQEVLLEWISMRGFSVSLSDLFVSCDS 1065 GSSWLQ+ LF + K YG KA+D + + QEVL E+++MRG SVSLSDL++ D Sbjct: 591 CSLGSSWLQNNTSGLFSVMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDH 650 Query: 1066 YTWDKMTEEVRSGLQEAKKGLK---------------------NVLSKQSVC-------- 1158 Y+ K+ E V+ L EA++ + +V +QS C Sbjct: 651 YSRRKLAEGVKLALYEAEEAFRVKKILLDPINIPVLKCHDETEDVTYRQSDCIQSNPSVI 710 Query: 1159 -----DFKGVFRDLQSLIYRYSSKDNSMLAMVKAGSKGSLPKLAQQCLTLGLQYSNVPLS 1323 FK VFRDL ++ ++ S DNSM+ M+ AGSKGS+ K AQQ +GLQ Sbjct: 711 RSSIMAFKDVFRDLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTACIGLQLPASKFP 770 Query: 1324 FSIP-------WDSSLS-------SSCHVAG-----VVESSFLAGLSPSECFLHSISCRD 1446 F IP W+ S +S V G V+++SF+ GL+P EC LH+IS R Sbjct: 771 FRIPSQLSCISWNGQKSLNYEAESTSERVGGQNLYAVIKNSFIEGLNPLECLLHAISGRA 830 Query: 1447 SSFSENADVPGTLNRKLMFSMRDLYMAYDGTVRYSYGNQVVQFSYGVSEDSSVLTSGNSA 1626 + FSENADVPGTL RKLM+ +RD+++AYDGTVR SYG Q+VQFSY +D Sbjct: 831 NFFSENADVPGTLTRKLMYHLRDIHVAYDGTVRSSYGQQIVQFSYDSVDD--------LV 882 Query: 1627 HQLGDPVGSLAACSISEAAYSALEKPISTFESSPLLNLKMLLDSSYKKTTVGQTVS-LFL 1803 +LG PVG AACSISEAAY ALE P++ E SPL+NL+ + +K T G + LFL Sbjct: 883 DKLGAPVGCRAACSISEAAYGALEHPVNGLEDSPLMNLQEVF-KCHKATNSGDHIGLLFL 941 Query: 1804 SKKLERWLYGPEYGALTVRSHLERVLFSDIVSSVMIIFSHQRSCRPHTSPWVCHFHLHQG 1983 S+ L+++ YG EY +L V++HLERV FSD+V ++MII+ R + W HFH+++ Sbjct: 942 SRHLKKYRYGLEYASLEVKNHLERVNFSDLVETIMIIYDGHDKIR-NEGMWTTHFHINKA 1000 Query: 1984 KMKKIGLDVQSIINALHQECDSTRQTLKVELPKLHILTRICSATNAQNEKDEDICITVEA 2163 MKK L ++ +++ L +E D+TR L +P + I R C + K CI V A Sbjct: 1001 MMKKKRLGLRFVVDELAKEYDTTRDQLNNAIPSIRISRRKC-LVGDEGVKSSSCCIAVVA 1059 Query: 2164 EVSRNSLLVMDTFRHTVIPFLLGTVIKGFMEFKKVDILWSESNISDKASRGELYMKVHLY 2343 RNS+ +DT + VIP +L T++KGF+EFK V+I GEL +KV + Sbjct: 1060 HAERNSISQLDTIKTRVIPSILDTLLKGFLEFKDVEIQCPHD--------GELLVKVCMS 1111 Query: 2344 EHCKSGTGWSLVVNKCLRIMDLIDWNRSHPDSMHDLFCTYGIDCSWEYFLRNLKVAVSD 2520 EHCK G W + N C+ +M+LIDW S P ++ D+FC+YGID +W+YF+ +LK A +D Sbjct: 1112 EHCKGGRFWPTLQNACIPVMELIDWELSQPSNVSDIFCSYGIDSAWKYFVESLKSATTD 1170 Score = 158 bits (400), Expect(2) = 0.0 Identities = 96/262 (36%), Positives = 142/262 (54%), Gaps = 12/262 (4%) Frame = +2 Query: 2522 GKSILPEHLLLVADCLTVTGQFIGLNAKGIAKQRDLVSVPSPFTQACFSSPGPCFIKAAK 2701 G++I EHLL++AD L+VTGQF L+++G+ +QR +S+ SPF++ACFS P FI AAK Sbjct: 1172 GRNIRREHLLVIADSLSVTGQFHALSSQGLKQQRTRLSISSPFSEACFSRPAQSFINAAK 1231 Query: 2702 YGAEDGLLGVLNAAAWGKEVPLGTGGQFDIIYSGKVHEFSETLDIYNTL---------SG 2854 + D L G L+A AWGKE GT G F+I++SGK HE + IY+ L Sbjct: 1232 QCSVDNLCGSLDAVAWGKEPFNGTSGPFEIMHSGKPHEPEQNESIYDFLCSSKVRNFEKN 1291 Query: 2855 HLCPERQNVKISVPPTTQKWMSGKGDT---DVLQTFDSFIGKGPNNLKGLSDLVMLHKNL 3025 HL RQ+ + + S KG T V T D ++ +++ + +L Sbjct: 1292 HLDTRRQSTE-NASICRLACKSSKGSTTVNGVAITIDQDFLHAKVSI--WDNIIDMRTSL 1348 Query: 3026 QEILHRYPVNDFLNEKDKSILTSALSYHPRSXXXXXXXXXXXXXXXHQKYKYSHCFILVR 3205 Q +L YP+N ++ E DKS L AL +H R + + + CFIL+R Sbjct: 1349 QNMLREYPLNGYVAEPDKSQLIEALKFHSRGAEKIGVGVREIKIGLNPSHPGTRCFILLR 1408 Query: 3206 KDGSEDDFSYRKCVRGFAKTLA 3271 D + +DFSY KCV+G A +++ Sbjct: 1409 NDDTTEDFSYHKCVQGAADSIS 1430