BLASTX nr result
ID: Coptis24_contig00007861
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00007861
(1234 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum] 287 4e-75
emb|CAN75440.1| hypothetical protein VITISV_007304 [Vitis vinifera] 282 1e-73
emb|CAN69911.1| hypothetical protein VITISV_027081 [Vitis vinifera] 275 2e-71
emb|CAN65406.1| hypothetical protein VITISV_030853 [Vitis vinifera] 274 4e-71
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly... 271 2e-70
>dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]
Length = 1338
Score = 287 bits (734), Expect = 4e-75
Identities = 134/179 (74%), Positives = 152/179 (84%)
Frame = +1
Query: 535 HWEGVKWILRYLKGTSKSCLCFGGSKPLLEGYTDADMAGDVDSMKSTSGYLVTFAGGAVS 714
HW+ VKWILRYL+GTSK CLCFG P+L GYTDADMAGDVDS KSTSGYL+ F+GGAVS
Sbjct: 1148 HWDAVKWILRYLRGTSKLCLCFGEDNPVLVGYTDADMAGDVDSRKSTSGYLINFSGGAVS 1207
Query: 715 WQSKLQKCVALSTTEAEYIAATECCKELLWMKRFFDELGLKQKQFVVLCDSQSAIHLSKN 894
WQSKLQKCVALSTTEAE+IAATE CKEL+WMK+F ELG Q + + CDSQSAIHL+KN
Sbjct: 1208 WQSKLQKCVALSTTEAEFIAATEACKELIWMKKFLTELGFSQDGYQLFCDSQSAIHLAKN 1267
Query: 895 PSFHSRSKHIHVRYHWIREVLEDKHLCIEKIHTDKNGSDMMTKVLPKGKFDVCCAIAGM 1071
SFHSRSKHI VRY+WIR+VLE K L +EKIHTD+NGSDM+TK LPKGKF+ C AG+
Sbjct: 1268 ASFHSRSKHIDVRYNWIRDVLEKKMLRLEKIHTDENGSDMLTKTLPKGKFEFCREAAGI 1326
Score = 170 bits (430), Expect = 8e-40
Identities = 85/135 (62%), Positives = 99/135 (73%)
Frame = +2
Query: 2 FVQRFPDGDFIVLLLYVDDMLIVGPXXXXXXXXXXXXXXSFEMKDLGQAKQILGMRITRD 181
F Q+F D DFI+LLLYVDDMLIVG F MKDLG AKQILGMRI RD
Sbjct: 994 FAQKFSDDDFIILLLYVDDMLIVGRNVSRINSLKEQLSKFFAMKDLGPAKQILGMRIMRD 1053
Query: 182 RKSGKLWLSQESYIEKVLKRFNMDQAKPVSCPLGGQFRMTKEMCPKGEHEQSQMEKIPYA 361
R++ KLWLSQE YIEKVL+RFNM++ K VSCPL FR++ + P + E+ +ME+IPYA
Sbjct: 1054 REAKKLWLSQEKYIEKVLQRFNMEKTKAVSCPLANHFRLSTKQSPSTDDERRKMERIPYA 1113
Query: 362 SAVGSLMYAMVCTRP 406
SAVGSLMYAMVCTRP
Sbjct: 1114 SAVGSLMYAMVCTRP 1128
>emb|CAN75440.1| hypothetical protein VITISV_007304 [Vitis vinifera]
Length = 1362
Score = 282 bits (721), Expect = 1e-73
Identities = 131/179 (73%), Positives = 151/179 (84%)
Frame = +1
Query: 535 HWEGVKWILRYLKGTSKSCLCFGGSKPLLEGYTDADMAGDVDSMKSTSGYLVTFAGGAVS 714
HWE VKWI+RYL+GTSK L FG KP+L GYTD+DMAGDVD+ KSTSGYL+TF+GGAVS
Sbjct: 1118 HWEAVKWIMRYLRGTSKLKLTFGSGKPILVGYTDSDMAGDVDNRKSTSGYLMTFSGGAVS 1177
Query: 715 WQSKLQKCVALSTTEAEYIAATECCKELLWMKRFFDELGLKQKQFVVLCDSQSAIHLSKN 894
WQS+LQKCVALSTTEAEYIAA E CKELLWMK F ELG KQ+++VV CD+QSAIHLSKN
Sbjct: 1178 WQSRLQKCVALSTTEAEYIAAVEACKELLWMKCFMQELGFKQQRYVVYCDNQSAIHLSKN 1237
Query: 895 PSFHSRSKHIHVRYHWIREVLEDKHLCIEKIHTDKNGSDMMTKVLPKGKFDVCCAIAGM 1071
++H+RSKHI VRYHW+R+ L D IEKIHTD NGSDM+TK LP+ K VCC+IAGM
Sbjct: 1238 STYHARSKHIDVRYHWMRDALNDNLFEIEKIHTDNNGSDMLTKTLPREKLGVCCSIAGM 1296
Score = 143 bits (361), Expect = 8e-32
Identities = 73/135 (54%), Positives = 89/135 (65%)
Frame = +2
Query: 2 FVQRFPDGDFIVLLLYVDDMLIVGPXXXXXXXXXXXXXXSFEMKDLGQAKQILGMRITRD 181
FVQ+F D DF++LLLYVDD+LIV SF MKDLG K+ILG+RI RD
Sbjct: 964 FVQKFSDDDFVILLLYVDDILIVCRNVSRIDNLKKQLSKSFAMKDLGPVKRILGIRIERD 1023
Query: 182 RKSGKLWLSQESYIEKVLKRFNMDQAKPVSCPLGGQFRMTKEMCPKGEHEQSQMEKIPYA 361
R S KL + QE YIEKV RFNM + K VS PL F+++ P + E+ M ++PYA
Sbjct: 1024 RASKKLCMLQEQYIEKVFARFNMSKFKVVSSPLASHFKLSSRHSPSTDKEKEDMRRVPYA 1083
Query: 362 SAVGSLMYAMVCTRP 406
SA+GSLMYAMVCTRP
Sbjct: 1084 SAIGSLMYAMVCTRP 1098
>emb|CAN69911.1| hypothetical protein VITISV_027081 [Vitis vinifera]
Length = 1204
Score = 275 bits (702), Expect = 2e-71
Identities = 127/179 (70%), Positives = 148/179 (82%)
Frame = +1
Query: 535 HWEGVKWILRYLKGTSKSCLCFGGSKPLLEGYTDADMAGDVDSMKSTSGYLVTFAGGAVS 714
HWE VKWI+RYL+GTSK L FGG KP+L GYTD+DMAGDVD+ +ST GYL+TF+GG VS
Sbjct: 964 HWEAVKWIMRYLRGTSKLKLTFGGGKPILVGYTDSDMAGDVDNRRSTLGYLMTFSGGTVS 1023
Query: 715 WQSKLQKCVALSTTEAEYIAATECCKELLWMKRFFDELGLKQKQFVVLCDSQSAIHLSKN 894
WQS+ QKCVALSTTEAEYIAA E C ELLWMK F ELG KQ+++VV CD+QSAIHLSKN
Sbjct: 1024 WQSRQQKCVALSTTEAEYIAAXEACNELLWMKCFMQELGFKQQRYVVYCDNQSAIHLSKN 1083
Query: 895 PSFHSRSKHIHVRYHWIREVLEDKHLCIEKIHTDKNGSDMMTKVLPKGKFDVCCAIAGM 1071
++H+RSKHI VRYHW+R+ L D IEKIHTD NGSDM+TK LP+ K VCC+IAGM
Sbjct: 1084 STYHARSKHIDVRYHWMRDALNDNLFEIEKIHTDNNGSDMLTKTLPREKLGVCCSIAGM 1142
Score = 137 bits (344), Expect = 7e-30
Identities = 70/132 (53%), Positives = 86/132 (65%)
Frame = +2
Query: 11 RFPDGDFIVLLLYVDDMLIVGPXXXXXXXXXXXXXXSFEMKDLGQAKQILGMRITRDRKS 190
+F D DF++LLLYVDD+LIVG SF MKDLG K+ILG+RI RDR
Sbjct: 813 KFSDDDFVILLLYVDDILIVGRNVSRIDNLKKQLSKSFAMKDLGPVKRILGIRIERDRAX 872
Query: 191 GKLWLSQESYIEKVLKRFNMDQAKPVSCPLGGQFRMTKEMCPKGEHEQSQMEKIPYASAV 370
KL + QE YIEK+L RFNM +AK VS PL F+++ P + E+ M ++ YASAV
Sbjct: 873 KKLCMLQEQYIEKMLARFNMSKAKVVSSPLASHFKLSSRHNPSTDKEKEDMRRVSYASAV 932
Query: 371 GSLMYAMVCTRP 406
GSLMY MVCTRP
Sbjct: 933 GSLMYVMVCTRP 944
>emb|CAN65406.1| hypothetical protein VITISV_030853 [Vitis vinifera]
Length = 1017
Score = 274 bits (700), Expect = 4e-71
Identities = 128/177 (72%), Positives = 150/177 (84%)
Frame = +1
Query: 541 EGVKWILRYLKGTSKSCLCFGGSKPLLEGYTDADMAGDVDSMKSTSGYLVTFAGGAVSWQ 720
E VKWI+RYL+GTSK L FGG KP+L GYTD+DMAGDVD+ +STSGYL+T +GGAVSWQ
Sbjct: 779 EAVKWIMRYLRGTSKLKLTFGGGKPILVGYTDSDMAGDVDNRRSTSGYLMTCSGGAVSWQ 838
Query: 721 SKLQKCVALSTTEAEYIAATECCKELLWMKRFFDELGLKQKQFVVLCDSQSAIHLSKNPS 900
S+LQKCVALSTTEAEYIAA E CKELLWMK F ELG KQ+++VV CD+QS IHLSKN +
Sbjct: 839 SRLQKCVALSTTEAEYIAAAEACKELLWMKCFMQELGFKQQRYVVYCDNQSPIHLSKNST 898
Query: 901 FHSRSKHIHVRYHWIREVLEDKHLCIEKIHTDKNGSDMMTKVLPKGKFDVCCAIAGM 1071
+H+RSKHIHVRYHW+R+ L D L IEKIHT+ NGSDM+TK LP+ K VCC+IAGM
Sbjct: 899 YHARSKHIHVRYHWMRDALNDNLLEIEKIHTNNNGSDMLTKTLPREKLGVCCSIAGM 955
Score = 97.4 bits (241), Expect = 6e-18
Identities = 50/91 (54%), Positives = 61/91 (67%)
Frame = +2
Query: 119 SFEMKDLGQAKQILGMRITRDRKSGKLWLSQESYIEKVLKRFNMDQAKPVSCPLGGQFRM 298
SF MKDLG K+ILG+RI RDR S KL + QE YIEKVL RFNM +AK VS PL F++
Sbjct: 688 SFAMKDLGPVKRILGIRIERDRASKKLCMLQEQYIEKVLARFNMSKAKVVSSPLTSHFKL 747
Query: 299 TKEMCPKGEHEQSQMEKIPYASAVGSLMYAM 391
+ P + E+ M ++ YA A GSLMY M
Sbjct: 748 SSRHSPSTDKEKEDMRRVSYALAGGSLMYVM 778
>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
1-94; Includes: RecName: Full=Protease; Includes:
RecName: Full=Reverse transcriptase; Includes: RecName:
Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
protein product [Nicotiana tabacum]
Length = 1328
Score = 271 bits (694), Expect = 2e-70
Identities = 122/179 (68%), Positives = 154/179 (86%)
Frame = +1
Query: 535 HWEGVKWILRYLKGTSKSCLCFGGSKPLLEGYTDADMAGDVDSMKSTSGYLVTFAGGAVS 714
HWE VKWILRYL+GT+ CLCFGGS P+L+GYTDADMAGD+D+ KS++GYL TF+GGA+S
Sbjct: 1147 HWEAVKWILRYLRGTTGDCLCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAIS 1206
Query: 715 WQSKLQKCVALSTTEAEYIAATECCKELLWMKRFFDELGLKQKQFVVLCDSQSAIHLSKN 894
WQSKLQKCVALSTTEAEYIAATE KE++W+KRF ELGL QK++VV CDSQSAI LSKN
Sbjct: 1207 WQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKN 1266
Query: 895 PSFHSRSKHIHVRYHWIREVLEDKHLCIEKIHTDKNGSDMMTKVLPKGKFDVCCAIAGM 1071
+H+R+KHI VRYHWIRE+++D+ L + KI T++N +DM+TKV+P+ KF++C + GM
Sbjct: 1267 SMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325
Score = 166 bits (420), Expect = 1e-38
Identities = 81/135 (60%), Positives = 99/135 (73%)
Frame = +2
Query: 2 FVQRFPDGDFIVLLLYVDDMLIVGPXXXXXXXXXXXXXXSFEMKDLGQAKQILGMRITRD 181
+ +RF + +FI+LLLYVDDMLIVG SF+MKDLG A+QILGM+I R+
Sbjct: 993 YFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRE 1052
Query: 182 RKSGKLWLSQESYIEKVLKRFNMDQAKPVSCPLGGQFRMTKEMCPKGEHEQSQMEKIPYA 361
R S KLWLSQE YIE+VL+RFNM AKPVS PL G +++K+MCP E+ M K+PY+
Sbjct: 1053 RTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYS 1112
Query: 362 SAVGSLMYAMVCTRP 406
SAVGSLMYAMVCTRP
Sbjct: 1113 SAVGSLMYAMVCTRP 1127