BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00007860
         (774 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]           274   2e-89
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...   271   6e-88
gb|AAW22873.1| putative polyprotein [Solanum lycopersicum]            255   1e-85
gb|AER13172.1| putative gag/pol polyprotein [Phaseolus vulgaris]      254   4e-80
emb|CAN75440.1| hypothetical protein VITISV_007304 [Vitis vinifera]   263   6e-80

>dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]
          Length = 1338

 Score =  274 bits (701), Expect(2) = 2e-89
 Identities = 132/180 (73%), Positives = 149/180 (82%)
 Frame = +2

Query: 233  KMCPKGEHEQSQMEKILYASAVGSLMYAMVCTRPDIAFAVGVVSRFLSNPGKEHWKGVKW 412
            K  P  + E+ +ME+I YASAVGSLMYAMVCTRPDIA AVGVVSRFLSNPGKEHW  VKW
Sbjct: 1095 KQSPSTDDERRKMERIPYASAVGSLMYAMVCTRPDIAHAVGVVSRFLSNPGKEHWDAVKW 1154

Query: 413  ILRYLKGTSKSCLCFGGSKPLLEGYTDADIAGDVDSMKSTSGYLVTFARGAISWQSKL*K 592
            ILRYL+GTSK CLCFG   P+L GYTDAD+AGDVDS KSTSGYL+ F+ GA+SWQSKL K
Sbjct: 1155 ILRYLRGTSKLCLCFGEDNPVLVGYTDADMAGDVDSRKSTSGYLINFSGGAVSWQSKLQK 1214

Query: 593  CVALSTTEAEYIVVTECCKELLWMKRFHDELGLKQKQFVVLCDSQSAIHLSKNPSFYSRS 772
            CVALSTTEAE+I  TE CKEL+WMK+F  ELG  Q  + + CDSQSAIHL+KN SF+SRS
Sbjct: 1215 CVALSTTEAEFIAATEACKELIWMKKFLTELGFSQDGYQLFCDSQSAIHLAKNASFHSRS 1274



 Score = 82.0 bits (201), Expect(2) = 2e-89
 Identities = 39/60 (65%), Positives = 47/60 (78%)
 Frame = +1

Query: 52   FEMKDLGQAKQILGMWITRDRKGGKLWLS*KSYIEKVLKKFNMDQAKPVSCPLGGQFRMT 231
            F MKDLG AKQILGM I RDR+  KLWLS + YIEKVL++FNM++ K VSCPL   FR++
Sbjct: 1034 FAMKDLGPAKQILGMRIMRDREAKKLWLSQEKYIEKVLQRFNMEKTKAVSCPLANHFRLS 1093


>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
            1-94; Includes: RecName: Full=Protease; Includes:
            RecName: Full=Reverse transcriptase; Includes: RecName:
            Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
            protein product [Nicotiana tabacum]
          Length = 1328

 Score =  271 bits (692), Expect(2) = 6e-88
 Identities = 128/180 (71%), Positives = 151/180 (83%)
 Frame = +2

Query: 233  KMCPKGEHEQSQMEKILYASAVGSLMYAMVCTRPDIAFAVGVVSRFLSNPGKEHWKGVKW 412
            KMCP    E+  M K+ Y+SAVGSLMYAMVCTRPDIA AVGVVSRFL NPGKEHW+ VKW
Sbjct: 1094 KMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKW 1153

Query: 413  ILRYLKGTSKSCLCFGGSKPLLEGYTDADIAGDVDSMKSTSGYLVTFARGAISWQSKL*K 592
            ILRYL+GT+  CLCFGGS P+L+GYTDAD+AGD+D+ KS++GYL TF+ GAISWQSKL K
Sbjct: 1154 ILRYLRGTTGDCLCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQK 1213

Query: 593  CVALSTTEAEYIVVTECCKELLWMKRFHDELGLKQKQFVVLCDSQSAIHLSKNPSFYSRS 772
            CVALSTTEAEYI  TE  KE++W+KRF  ELGL QK++VV CDSQSAI LSKN  +++R+
Sbjct: 1214 CVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHART 1273



 Score = 80.1 bits (196), Expect(2) = 6e-88
 Identities = 38/62 (61%), Positives = 48/62 (77%)
 Frame = +1

Query: 49   SFEMKDLGQAKQILGMWITRDRKGGKLWLS*KSYIEKVLKKFNMDQAKPVSCPLGGQFRM 228
            SF+MKDLG A+QILGM I R+R   KLWLS + YIE+VL++FNM  AKPVS PL G  ++
Sbjct: 1032 SFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKL 1091

Query: 229  TK 234
            +K
Sbjct: 1092 SK 1093


>gb|AAW22873.1| putative polyprotein [Solanum lycopersicum]
          Length = 687

 Score =  255 bits (652), Expect(2) = 1e-85
 Identities = 121/180 (67%), Positives = 145/180 (80%)
 Frame = +2

Query: 233 KMCPKGEHEQSQMEKILYASAVGSLMYAMVCTRPDIAFAVGVVSRFLSNPGKEHWKGVKW 412
           + CP  E E+  M  I Y+S VGSLMYAMVCTRPDIA AVG+VSR+L+NP K HW+ VKW
Sbjct: 454 RCCPTTEKEKESMSHIPYSSVVGSLMYAMVCTRPDIAHAVGLVSRYLANPSKVHWEAVKW 513

Query: 413 ILRYLKGTSKSCLCFGGSKPLLEGYTDADIAGDVDSMKSTSGYLVTFARGAISWQSKL*K 592
           ILRYL+GTS   LCFGG +P+LEG+TDAD+AGD+D+ KSTSGYL  FARGAISWQSKL K
Sbjct: 514 ILRYLRGTSNLSLCFGGGEPILEGFTDADMAGDLDNRKSTSGYLFKFARGAISWQSKLQK 573

Query: 593 CVALSTTEAEYIVVTECCKELLWMKRFHDELGLKQKQFVVLCDSQSAIHLSKNPSFYSRS 772
           CVALSTTE EYI   E  KE+LW+KRF  ELGLKQ ++VV CDS+SA+ LSKN  +++R+
Sbjct: 574 CVALSTTEVEYIAAVEASKEMLWLKRFLQELGLKQSEYVVFCDSKSAMDLSKNIMYHART 633



 Score = 87.8 bits (216), Expect(2) = 1e-85
 Identities = 41/62 (66%), Positives = 51/62 (82%)
 Frame = +1

Query: 49  SFEMKDLGQAKQILGMWITRDRKGGKLWLS*KSYIEKVLKKFNMDQAKPVSCPLGGQFRM 228
           SF+MKDLG AKQILGM I RDRK GKLWLS ++YIE+VL++FNM  AKPV+ PL   F++
Sbjct: 392 SFDMKDLGPAKQILGMEIARDRKAGKLWLSQENYIERVLERFNMKNAKPVNTPLAAHFKL 451

Query: 229 TK 234
           +K
Sbjct: 452 SK 453


>gb|AER13172.1| putative gag/pol polyprotein [Phaseolus vulgaris]
          Length = 1556

 Score =  254 bits (649), Expect(2) = 4e-80
 Identities = 118/180 (65%), Positives = 146/180 (81%)
 Frame = +2

Query: 233  KMCPKGEHEQSQMEKILYASAVGSLMYAMVCTRPDIAFAVGVVSRFLSNPGKEHWKGVKW 412
            K  P  E+E+S M++I YASAVGSLMYAMVCTRPDIA  VG VSRF+SNPG+EHW  VKW
Sbjct: 1038 KQSPSYEYEKSDMQRIPYASAVGSLMYAMVCTRPDIAHVVGTVSRFMSNPGREHWNAVKW 1097

Query: 413  ILRYLKGTSKSCLCFGGSKPLLEGYTDADIAGDVDSMKSTSGYLVTFARGAISWQSKL*K 592
            ILRYL+GT+   LCFGG KP L GYTD+D+ GD+DS +STSGY++ FA GA++WQS+L K
Sbjct: 1098 ILRYLRGTTCLRLCFGGDKPTLVGYTDSDMGGDIDSRRSTSGYVIKFAGGAVAWQSRLQK 1157

Query: 593  CVALSTTEAEYIVVTECCKELLWMKRFHDELGLKQKQFVVLCDSQSAIHLSKNPSFYSRS 772
            CVALSTTEAE+I +TE CKELLW+K+   EL   Q ++++ CDSQSAI+L KN +F+SRS
Sbjct: 1158 CVALSTTEAEFIAITEACKELLWVKKLLQELSFVQDKYLLFCDSQSAIYLGKNSTFHSRS 1217



 Score = 70.5 bits (171), Expect(2) = 4e-80
 Identities = 33/61 (54%), Positives = 47/61 (77%)
 Frame = +1

Query: 49   SFEMKDLGQAKQILGMWITRDRKGGKLWLS*KSYIEKVLKKFNMDQAKPVSCPLGGQFRM 228
            SF MKD+G AKQILG+ I RDR+  KLWLS ++Y+++VL++F M+ AK VS PL   F++
Sbjct: 976  SFAMKDMGAAKQILGIRIMRDRQEKKLWLSQENYVKRVLQRFQMENAKVVSTPLATHFKL 1035

Query: 229  T 231
            +
Sbjct: 1036 S 1036


>emb|CAN75440.1| hypothetical protein VITISV_007304 [Vitis vinifera]
          Length = 1362

 Score =  263 bits (673), Expect(2) = 6e-80
 Identities = 123/177 (69%), Positives = 149/177 (84%)
 Frame = +2

Query: 242  PKGEHEQSQMEKILYASAVGSLMYAMVCTRPDIAFAVGVVSRFLSNPGKEHWKGVKWILR 421
            P  + E+  M ++ YASA+GSLMYAMVCTRPDIA+AVGVVSRFLSNPG+ HW+ VKWI+R
Sbjct: 1068 PSTDKEKEDMRRVPYASAIGSLMYAMVCTRPDIAYAVGVVSRFLSNPGRHHWEAVKWIMR 1127

Query: 422  YLKGTSKSCLCFGGSKPLLEGYTDADIAGDVDSMKSTSGYLVTFARGAISWQSKL*KCVA 601
            YL+GTSK  L FG  KP+L GYTD+D+AGDVD+ KSTSGYL+TF+ GA+SWQS+L KCVA
Sbjct: 1128 YLRGTSKLKLTFGSGKPILVGYTDSDMAGDVDNRKSTSGYLMTFSGGAVSWQSRLQKCVA 1187

Query: 602  LSTTEAEYIVVTECCKELLWMKRFHDELGLKQKQFVVLCDSQSAIHLSKNPSFYSRS 772
            LSTTEAEYI   E CKELLWMK F  ELG KQ+++VV CD+QSAIHLSKN ++++RS
Sbjct: 1188 LSTTEAEYIAAVEACKELLWMKCFMQELGFKQQRYVVYCDNQSAIHLSKNSTYHARS 1244



 Score = 60.8 bits (146), Expect(2) = 6e-80
 Identities = 31/61 (50%), Positives = 40/61 (65%)
 Frame = +1

Query: 49   SFEMKDLGQAKQILGMWITRDRKGGKLWLS*KSYIEKVLKKFNMDQAKPVSCPLGGQFRM 228
            SF MKDLG  K+ILG+ I RDR   KL +  + YIEKV  +FNM + K VS PL   F++
Sbjct: 1003 SFAMKDLGPVKRILGIRIERDRASKKLCMLQEQYIEKVFARFNMSKFKVVSSPLASHFKL 1062

Query: 229  T 231
            +
Sbjct: 1063 S 1063