BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00007701
         (301 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bu...   136   2e-30
emb|CBI21137.3| unnamed protein product [Vitis vinifera]              135   4e-30
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...   135   4e-30
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...   135   4e-30
gb|EEE61785.1| hypothetical protein OsJ_16357 [Oryza sativa Japo...   130   1e-28

>gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bulbocastanum]
          Length = 1018

 Score =  136 bits (342), Expect = 2e-30
 Identities = 65/99 (65%), Positives = 79/99 (79%)
 Frame = -1

Query: 298 EGFRRGGYSSKKIDELIKGTRFPPKESTKDCLDKYLFPTLTGSKQKALFLGYMVKRLLQS 119
           E FR+G  +   +D L+K  +FPP+ES ++C+ +YLFP L+G KQKA FLGYMVK LL S
Sbjct: 361 EDFRKGKKALAYVDRLVKSCKFPPQESVEECIKEYLFPNLSGLKQKARFLGYMVKCLLLS 420

Query: 118 YSGQGKPDNKDDFRNKRLDLAGELLERELRNHIKHAERR 2
           Y G+ K DN+DDFRNKRLDLAGELLERELR H+KHAERR
Sbjct: 421 YIGRRKVDNRDDFRNKRLDLAGELLERELRVHVKHAERR 459


>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score =  135 bits (339), Expect = 4e-30
 Identities = 64/97 (65%), Positives = 79/97 (81%)
 Frame = -1

Query: 292 FRRGGYSSKKIDELIKGTRFPPKESTKDCLDKYLFPTLTGSKQKALFLGYMVKRLLQSYS 113
           FRR G +   +D+L+K  +FPP ES ++C+ KYLFP  +G KQKA FLGYMVK LLQ+Y+
Sbjct: 380 FRRQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSGVKQKARFLGYMVKCLLQAYT 439

Query: 112 GQGKPDNKDDFRNKRLDLAGELLERELRNHIKHAERR 2
           G+ K DN+DDFRNKRL+LAGELLERELR HI+HAERR
Sbjct: 440 GRRKCDNRDDFRNKRLELAGELLERELRVHIRHAERR 476


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
           vinifera]
          Length = 1198

 Score =  135 bits (339), Expect = 4e-30
 Identities = 64/97 (65%), Positives = 79/97 (81%)
 Frame = -1

Query: 292 FRRGGYSSKKIDELIKGTRFPPKESTKDCLDKYLFPTLTGSKQKALFLGYMVKRLLQSYS 113
           FRR G +   +D+L+K  +FPP ES ++C+ KYLFP  +G KQKA FLGYMVK LLQ+Y+
Sbjct: 344 FRRQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSGVKQKARFLGYMVKCLLQAYT 403

Query: 112 GQGKPDNKDDFRNKRLDLAGELLERELRNHIKHAERR 2
           G+ K DN+DDFRNKRL+LAGELLERELR HI+HAERR
Sbjct: 404 GRRKCDNRDDFRNKRLELAGELLERELRVHIRHAERR 440


>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score =  135 bits (339), Expect = 4e-30
 Identities = 65/99 (65%), Positives = 79/99 (79%)
 Frame = -1

Query: 298 EGFRRGGYSSKKIDELIKGTRFPPKESTKDCLDKYLFPTLTGSKQKALFLGYMVKRLLQS 119
           E FR+G  +   +D LIK  +FPP+ES ++C++ YLFP L+G KQKA FLGYMVK LL S
Sbjct: 355 EDFRKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLHS 414

Query: 118 YSGQGKPDNKDDFRNKRLDLAGELLERELRNHIKHAERR 2
           + G+ K DN+DDFRNKRL+LAGELLERELR HIKHAERR
Sbjct: 415 FIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERR 453


>gb|EEE61785.1| hypothetical protein OsJ_16357 [Oryza sativa Japonica Group]
          Length = 1185

 Score =  130 bits (327), Expect = 1e-28
 Identities = 62/98 (63%), Positives = 79/98 (80%)
 Frame = -1

Query: 298 EGFRRGGYSSKKIDELIKGTRFPPKESTKDCLDKYLFPTLTGSKQKALFLGYMVKRLLQS 119
           EGFR+   + + +DELIK ++FPP E   D + KYLFP+++G++ KALFLGYMVK LL +
Sbjct: 373 EGFRKSDKARQYVDELIKNSKFPPAEPFDDYIAKYLFPSISGNRNKALFLGYMVKCLLMA 432

Query: 118 YSGQGKPDNKDDFRNKRLDLAGELLERELRNHIKHAER 5
           ++G+ K DNKDDFRNKRLDLAGELL RELR HI+HAER
Sbjct: 433 FTGKRKCDNKDDFRNKRLDLAGELLGRELRAHIRHAER 470