BLASTX nr result
ID: Coptis24_contig00007497
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00007497
(1049 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002318926.1| predicted protein [Populus trichocarpa] gi|2... 330 5e-88
ref|XP_002329996.1| predicted protein [Populus trichocarpa] gi|2... 329 8e-88
emb|CAN65741.1| hypothetical protein VITISV_037758 [Vitis vinifera] 327 4e-87
ref|XP_002276575.1| PREDICTED: pentatricopeptide repeat-containi... 325 1e-86
ref|XP_003555175.1| PREDICTED: pentatricopeptide repeat-containi... 314 3e-83
>ref|XP_002318926.1| predicted protein [Populus trichocarpa] gi|222857302|gb|EEE94849.1|
predicted protein [Populus trichocarpa]
Length = 724
Score = 330 bits (845), Expect = 5e-88
Identities = 168/357 (47%), Positives = 238/357 (66%), Gaps = 10/357 (2%)
Frame = +1
Query: 1 KQIPRWVCFISCITTHATT----------QNYPNSPEFESKTRFXXXXXXXXXXXXHILD 150
K IP+W+ S I++ + T QN PN +F++K + +L
Sbjct: 9 KTIPKWLNLKSFISSVSCTNAIQINPEINQNAPNITDFDAKIQ-SLRNKLCPDYLIKVLK 67
Query: 151 STKDLKSSVNIFKWATSQKRFYHTADTYFFMIMKLGMAGNVQDMEFFCNEMAKDKCPHAE 330
ST D+ S+V +FKWA+ Q+RF HT DTY+++I KLGMA NV++ME FC M KD+CP E
Sbjct: 68 STSDINSAVKLFKWASLQRRFNHTDDTYYWIIFKLGMAENVEEMEGFCQNMVKDRCPGVE 127
Query: 331 EAFAELVDSFVKNRRFKEALRVLEIMNLGKFKPPSIHICNVMLRTLVEDQRDLETVLFAY 510
+ LVD+FV+N R EALRVL MNL KP SI + N +L LVE++R + V+F Y
Sbjct: 128 DVLLSLVDAFVRNCRLNEALRVLFNMNLAGIKP-SIDVFNFVLGALVEEKRGFQDVVFVY 186
Query: 511 KEIVKAGIVPNVDTLNYLIEVLCENDKMESALDQYRRMNRKGCVPNSRTFEILICGLCKR 690
KE+VKAG+ P++DTLNYL+EVL E D+++SALDQYRR+N+KGC+PNSRTFEI+I GL +
Sbjct: 187 KEMVKAGVAPSIDTLNYLLEVLFETDRVDSALDQYRRINKKGCIPNSRTFEIVIKGLIAK 246
Query: 691 TRVDESIMVLSEMFKLECGPDLNFCNSVLPVLCKANKSDEVLRLYKMMRDSGVLVDSLVY 870
RVD+S+ +L EM +L C P+L F S + + C ++ + +RL++ M+DS D +Y
Sbjct: 247 NRVDDSVTILHEMLELGCLPELRFFRSTILLFCGEDRLQQGIRLFRKMKDSNFTPDPFIY 306
Query: 871 EVLIHCLCENLLLDDAIVLFEEMLKSGVAPLVSIYVDIMNGLCKLSKFSNARNLLEE 1041
LI CLC++L LD+A L EEM++S + P +++VDI+NG CKL K + A LLE+
Sbjct: 307 GALIQCLCKHLRLDEAANLLEEMMESRLTPDNNVFVDIVNGFCKLGKINEAIKLLED 363
Score = 63.5 bits (153), Expect = 8e-08
Identities = 56/253 (22%), Positives = 114/253 (45%), Gaps = 3/253 (1%)
Frame = +1
Query: 298 EMAKDKCPHAEEAFAELVDSFVKNRRFKEALRVLEIMNLGKFKPPSIHICNVMLRTLVED 477
EM + + F ++V+ F K + EA+++LE ++ P N +LR +
Sbjct: 328 EMMESRLTPDNNVFVDIVNGFCKLGKINEAIKLLEDKHVHVTSPH-----NALLRCCCDA 382
Query: 478 QRDLETVLFAYKEIVKAGIVPNVD---TLNYLIEVLCENDKMESALDQYRRMNRKGCVPN 648
+ F K +++ N+D + N LI LCE + +A + RM +P+
Sbjct: 383 DK-----FFMAKGLLEKMSERNIDDCDSWNILIRWLCEKVGVMNAYELLGRMIISSLIPD 437
Query: 649 SRTFEILICGLCKRTRVDESIMVLSEMFKLECGPDLNFCNSVLPVLCKANKSDEVLRLYK 828
T+ L+ G C+ ++ ++++ + ++ D + ++ LC+ K E ++++
Sbjct: 438 CATYSALVAGNCRLSKYEDALQLFLQLHAKFWILDPASYSELIEGLCRGEKYLEAVKVFC 497
Query: 829 MMRDSGVLVDSLVYEVLIHCLCENLLLDDAIVLFEEMLKSGVAPLVSIYVDIMNGLCKLS 1008
M ++ + SL + +LI +C +L++A+ L SG + + IM GL K
Sbjct: 498 YMSENRCSLQSLSFNMLIEGVCNMGMLNEAVRLQLLGYNSGTSCSNATCNYIMLGLSKSD 557
Query: 1009 KFSNARNLLEENL 1047
K + L + L
Sbjct: 558 KGKHMLAFLSQML 570
>ref|XP_002329996.1| predicted protein [Populus trichocarpa] gi|222871421|gb|EEF08552.1|
predicted protein [Populus trichocarpa]
Length = 725
Score = 329 bits (843), Expect = 8e-88
Identities = 166/357 (46%), Positives = 240/357 (67%), Gaps = 10/357 (2%)
Frame = +1
Query: 1 KQIPRWV---CFISCITTHAT-------TQNYPNSPEFESKTRFXXXXXXXXXXXXHILD 150
K+IP+WV FIS ++ T QN PN P+F+ K + +L
Sbjct: 9 KRIPKWVNLKAFISSVSCTNTIQINPEINQNTPNFPDFDVKIQ-SLRNKLYPDNLIKVLK 67
Query: 151 STKDLKSSVNIFKWATSQKRFYHTADTYFFMIMKLGMAGNVQDMEFFCNEMAKDKCPHAE 330
ST D+ S+V IFKWA Q++F HTADTY+++I KLGMAGNV++ME FC M K++C E
Sbjct: 68 STSDVNSAVKIFKWAALQRKFNHTADTYYWIIFKLGMAGNVEEMEGFCQNMVKERCTGEE 127
Query: 331 EAFAELVDSFVKNRRFKEALRVLEIMNLGKFKPPSIHICNVMLRTLVEDQRDLETVLFAY 510
+ LVD+FV+N R EA+RVL MNL KP SI + N +L LVE++R + V+F Y
Sbjct: 128 DVLVSLVDAFVRNCRLNEAMRVLFNMNLAGIKP-SIDVFNFVLGALVEEKRGFQDVVFVY 186
Query: 511 KEIVKAGIVPNVDTLNYLIEVLCENDKMESALDQYRRMNRKGCVPNSRTFEILICGLCKR 690
KE+VKAG+ P++DTLNYL+EVL E D+++SALDQYRR+N+KGC P+ +TFEI+I GL
Sbjct: 187 KEMVKAGVAPSIDTLNYLLEVLFETDRVDSALDQYRRINKKGCRPDGKTFEIVIKGLIAN 246
Query: 691 TRVDESIMVLSEMFKLECGPDLNFCNSVLPVLCKANKSDEVLRLYKMMRDSGVLVDSLVY 870
RVD+S+ +L EM +L C P+L+F + +P+ C+ ++ +E +RL++ M++S DS +Y
Sbjct: 247 DRVDDSVSILHEMLELGCLPELSFYRTTIPLFCREDRLEEGIRLFRKMKESNFTPDSFIY 306
Query: 871 EVLIHCLCENLLLDDAIVLFEEMLKSGVAPLVSIYVDIMNGLCKLSKFSNARNLLEE 1041
LI CLC+ L LD+A+ L EEM++S + +++VD++NG CKL K + A LLE+
Sbjct: 307 GALIQCLCKQLRLDEAVNLLEEMMESQLEGDNNVFVDVVNGFCKLGKINEAVKLLED 363
Score = 72.0 bits (175), Expect = 2e-10
Identities = 63/311 (20%), Positives = 135/311 (43%), Gaps = 21/311 (6%)
Frame = +1
Query: 163 LKSSVNIFKWA----TSQKRFYHTADTYFFMIMKLGMAGNVQDMEFFCN----------- 297
+K S+++F + +KR + + ++K G+A ++ + +
Sbjct: 158 IKPSIDVFNFVLGALVEEKRGFQDVVFVYKEMVKAGVAPSIDTLNYLLEVLFETDRVDSA 217
Query: 298 -----EMAKDKCPHAEEAFAELVDSFVKNRRFKEALRVL-EIMNLGKFKPPSIHICNVML 459
+ K C + F ++ + N R +++ +L E++ LG P + +
Sbjct: 218 LDQYRRINKKGCRPDGKTFEIVIKGLIANDRVDDSVSILHEMLELGCL--PELSFYRTTI 275
Query: 460 RTLVEDQRDLETVLFAYKEIVKAGIVPNVDTLNYLIEVLCENDKMESALDQYRRMNRKGC 639
+ R LE + ++++ ++ P+ LI+ LC+ +++ A++ M
Sbjct: 276 PLFCREDR-LEEGIRLFRKMKESNFTPDSFIYGALIQCLCKQLRLDEAVNLLEEMMESQL 334
Query: 640 VPNSRTFEILICGLCKRTRVDESIMVLSEMFKLECGPDLNFCNSVLPVLCKANKSDEVLR 819
++ F ++ G CK +++E++ +L + LE P N++L C A+K
Sbjct: 335 EGDNNVFVDVVNGFCKLGKINEAVKLLEDKHVLETSPH----NALLRCCCDADKFLMAKG 390
Query: 820 LYKMMRDSGVLVDSLVYEVLIHCLCENLLLDDAIVLFEEMLKSGVAPLVSIYVDIMNGLC 999
L + M + + D + +LI LCE + A L M+ S + P + Y ++ G C
Sbjct: 391 LLEKMSERNI-DDCDSWNILIRWLCEREEMVKAYELLGRMIISSLIPDYATYSALVAGNC 449
Query: 1000 KLSKFSNARNL 1032
+LSK+ +A L
Sbjct: 450 RLSKYEDALQL 460
>emb|CAN65741.1| hypothetical protein VITISV_037758 [Vitis vinifera]
Length = 730
Score = 327 bits (837), Expect = 4e-87
Identities = 172/359 (47%), Positives = 236/359 (65%), Gaps = 12/359 (3%)
Frame = +1
Query: 1 KQIPRWVCFISCITTHAT------------TQNYPNSPEFESKTRFXXXXXXXXXXXXHI 144
++IP+WV I+ +++ ++ T+ PN EFE K +F +
Sbjct: 12 RRIPKWVPLIASMSSISSANRIQAVPEIDQTKTPPNDNEFEPKFQFLRNRLMPDDLI-RV 70
Query: 145 LDSTKDLKSSVNIFKWATSQKRFYHTADTYFFMIMKLGMAGNVQDMEFFCNEMAKDKCPH 324
LD+T DL S++ +FKWA+ QKRF HTADTYF +I+KLGM G ++DME FC+EM ++KCP
Sbjct: 71 LDTTHDLNSAIKVFKWASRQKRFRHTADTYFRVILKLGMGGKIEDMEAFCSEMVREKCPG 130
Query: 325 AEEAFAELVDSFVKNRRFKEALRVLEIMNLGKFKPPSIHICNVMLRTLVEDQRDLETVLF 504
EE L+ SFVK+RR EA+RVL IM +K I N +L LV ++RD +L
Sbjct: 131 GEETLIALISSFVKHRRLSEAIRVLVIMTSNGYKFSIIEF-NGLLGALVRERRDFREILL 189
Query: 505 AYKEIVKAGIVPNVDTLNYLIEVLCENDKMESALDQYRRMNRKGCVPNSRTFEILICGLC 684
YKEIVKAGIVPNVDTLNYLIE L E + ++ ALDQYRRM++KGC PNS+TF+ILI GL
Sbjct: 190 VYKEIVKAGIVPNVDTLNYLIEALFELNWIDLALDQYRRMSKKGCSPNSKTFDILISGLI 249
Query: 685 KRTRVDESIMVLSEMFKLECGPDLNFCNSVLPVLCKANKSDEVLRLYKMMRDSGVLVDSL 864
R V++S++VL EM +LEC DL+F SV+P+ C ++ +E + L+ MR S ++ D L
Sbjct: 250 ARNLVEKSVVVLGEMIELECEADLSFYTSVIPLFCSVHQVEEGMMLFWRMRASKLVPDLL 309
Query: 865 VYEVLIHCLCENLLLDDAIVLFEEMLKSGVAPLVSIYVDIMNGLCKLSKFSNARNLLEE 1041
+Y VLI CL E+L LDDAI L EEM+ G+ P ++V I+ G CKL KF+ A L++
Sbjct: 310 IYRVLIQCLSESLWLDDAINLLEEMIGCGLTPEDDVFVYIVKGFCKLGKFNEAEFFLKD 368
>ref|XP_002276575.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62590-like
[Vitis vinifera]
Length = 730
Score = 325 bits (833), Expect = 1e-86
Identities = 172/358 (48%), Positives = 234/358 (65%), Gaps = 12/358 (3%)
Frame = +1
Query: 4 QIPRWVCFISCITTHAT------------TQNYPNSPEFESKTRFXXXXXXXXXXXXHIL 147
+IP+WV I+ +++ + T+ PN EFE K +F +L
Sbjct: 13 RIPKWVPLIASMSSISCANRIQAVPEIDQTKTPPNDNEFEPKFQFLRNRLMPDDLI-RVL 71
Query: 148 DSTKDLKSSVNIFKWATSQKRFYHTADTYFFMIMKLGMAGNVQDMEFFCNEMAKDKCPHA 327
D+T DL S++ +FKWA+ QKRF HTADTYF +I+KLGM G ++DME FC+EM ++KCP
Sbjct: 72 DTTHDLNSAIKVFKWASRQKRFRHTADTYFRVILKLGMGGKIEDMEAFCSEMVREKCPGG 131
Query: 328 EEAFAELVDSFVKNRRFKEALRVLEIMNLGKFKPPSIHICNVMLRTLVEDQRDLETVLFA 507
EE L+ SFVK+RR EA+RVL IM +K I N +L LV ++RD +L
Sbjct: 132 EETLIALISSFVKHRRLSEAIRVLVIMTSNGYKFSIIEF-NGLLGALVRERRDFREILLV 190
Query: 508 YKEIVKAGIVPNVDTLNYLIEVLCENDKMESALDQYRRMNRKGCVPNSRTFEILICGLCK 687
YKEIVKAGIVPNVDTLNYLIE L E + ++ ALDQYRRM++KGC PNS+TF+ILI GL
Sbjct: 191 YKEIVKAGIVPNVDTLNYLIEALFELNWIDLALDQYRRMSKKGCSPNSKTFDILISGLIA 250
Query: 688 RTRVDESIMVLSEMFKLECGPDLNFCNSVLPVLCKANKSDEVLRLYKMMRDSGVLVDSLV 867
R V++S++VL EM +LEC DL+F SV+P+ C ++ +E + L+ MR S ++ D L+
Sbjct: 251 RNLVEKSVVVLGEMIELECEADLSFYTSVIPLFCSVHQVEEGMMLFWRMRASKLVPDLLI 310
Query: 868 YEVLIHCLCENLLLDDAIVLFEEMLKSGVAPLVSIYVDIMNGLCKLSKFSNARNLLEE 1041
Y VLI CL E+L LDDAI L EEM+ G+ P ++V I+ G CKL KF+ A L++
Sbjct: 311 YRVLIQCLSESLWLDDAINLLEEMIGCGLTPEDDVFVYIVKGFCKLGKFNEAEFFLKD 368
>ref|XP_003555175.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Glycine max]
Length = 720
Score = 314 bits (804), Expect = 3e-83
Identities = 166/348 (47%), Positives = 224/348 (64%), Gaps = 5/348 (1%)
Frame = +1
Query: 13 RWVCFIS-CITTHATTQNY---PNSPEFESKTRFXXXXXXXXXXXXHILDSTKDLKSSVN 180
RWV S CI + T +S EF+ F LD T DL S+V
Sbjct: 16 RWVYLSSSCIADISETPGILKPKDSSEFDQNLNFLKNKLAPDNLI-RALDRTSDLNSAVR 74
Query: 181 IFKWATSQKRFYHTADTYFFMIMKLGMAGNVQDMEFFCNEMAKDKCPHAEEAFAELVDSF 360
IFKWA+ QK F+HT++TYF +I+KLGMAG V +M FC M KD+CP AEEA LV +F
Sbjct: 75 IFKWASRQKSFHHTSNTYFRIILKLGMAGKVLEMRDFCEYMVKDRCPGAEEALVALVHTF 134
Query: 361 VKNRRFKEALRVLEIMNLGKFKPPSIHICNVMLRTLV-EDQRDLETVLFAYKEIVKAGIV 537
V + R KEA+ VL MNLG ++PP I + NV+L LV + RD ++ LF YKE+VKA ++
Sbjct: 135 VGHHRIKEAIAVLVNMNLGGYRPP-IEVFNVLLGALVGRESRDFQSALFVYKEMVKACVL 193
Query: 538 PNVDTLNYLIEVLCENDKMESALDQYRRMNRKGCVPNSRTFEILICGLCKRTRVDESIMV 717
P VDTLNYL+EVL ++ E AL Q+RRMN KGC PNS+TFEIL+ GL + +VDE+ V
Sbjct: 194 PTVDTLNYLLEVLFATNRNELALHQFRRMNNKGCDPNSKTFEILVKGLIESGQVDEAATV 253
Query: 718 LSEMFKLECGPDLNFCNSVLPVLCKANKSDEVLRLYKMMRDSGVLVDSLVYEVLIHCLCE 897
L +M K +C PDL F ++P+ C+ NK +E ++L+KMM+DS + DS +YEVL+ C C
Sbjct: 254 LEQMLKHKCQPDLGFYTCIIPLFCRENKVEEAVKLFKMMKDSDFVPDSFIYEVLVRCFCN 313
Query: 898 NLLLDDAIVLFEEMLKSGVAPLVSIYVDIMNGLCKLSKFSNARNLLEE 1041
NL LD A+ L EM++ G+ P ++ VD+MN C+L K + A LE+
Sbjct: 314 NLQLDSAVSLINEMIEIGMPPKHNVLVDMMNCFCELGKINEAIMFLED 361
Score = 60.8 bits (146), Expect = 5e-07
Identities = 61/295 (20%), Positives = 126/295 (42%), Gaps = 4/295 (1%)
Frame = +1
Query: 163 LKSSVNIFKWATSQKRFYHTADTYFFMIMKLGMAGNVQ--DMEFFCNEMAKDKCPHAEEA 336
++ +V +FK K D++ + ++ N+Q NEM + P
Sbjct: 282 VEEAVKLFKM---MKDSDFVPDSFIYEVLVRCFCNNLQLDSAVSLINEMIEIGMPPKHNV 338
Query: 337 FAELVDSFVKNRRFKEALRVLEIMNLGKFKPPSIHICNVMLRTLVEDQRDLETVLFA--Y 510
++++ F + + EA+ LE + + P TL+E + VL A
Sbjct: 339 LVDMMNCFCELGKINEAIMFLEDTQVHETAP---------FNTLLEGCCNAGEVLAANVL 389
Query: 511 KEIVKAGIVPNVDTLNYLIEVLCENDKMESALDQYRRMNRKGCVPNSRTFEILICGLCKR 690
E + + + + N LI LCEN++ A RM + + + T+ L+ G C+
Sbjct: 390 LETMSERNIADCQSWNILIRWLCENEETNKAYILLGRMIKSFVILDHATYSALVVGKCRL 449
Query: 691 TRVDESIMVLSEMFKLECGPDLNFCNSVLPVLCKANKSDEVLRLYKMMRDSGVLVDSLVY 870
+ +E++ + +++ D + ++ L S + + ++ M + SL +
Sbjct: 450 GKYEEAMELFHQIYARCWVLDFASYSELVGGLSDIKHSQDAIEVFHYMSMKRCSLHSLSF 509
Query: 871 EVLIHCLCENLLLDDAIVLFEEMLKSGVAPLVSIYVDIMNGLCKLSKFSNARNLL 1035
LI C+C++ ++ AI L++ G++ ++ + IM +LSK A +LL
Sbjct: 510 YKLIKCVCDSGQVNQAIRLWQLAYFCGISCCIATHTTIMR---ELSKSRRAEDLL 561