BLASTX nr result

ID: Coptis24_contig00007424 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00007424
         (989 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267199.1| PREDICTED: 116 kDa U5 small nuclear ribonucl...   162   1e-97
emb|CBI25589.3| unnamed protein product [Vitis vinifera]              162   1e-97
ref|NP_172112.1| U5 small nuclear ribonucleoprotein component [A...   160   3e-95
ref|XP_002889592.1| hypothetical protein ARALYDRAFT_470642 [Arab...   160   3e-95
ref|XP_004139267.1| PREDICTED: 116 kDa U5 small nuclear ribonucl...   160   1e-94

>ref|XP_002267199.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component
            [Vitis vinifera] gi|147858113|emb|CAN81413.1|
            hypothetical protein VITISV_031170 [Vitis vinifera]
          Length = 988

 Score =  162 bits (411), Expect(3) = 1e-97
 Identities = 79/86 (91%), Positives = 81/86 (94%)
 Frame = -3

Query: 258  FQWGAREGPLCDKPIRNVKFKIVDAKIAQEPLHRGTSQIIPTARRVAYSAFLMAMPRLME 79
            FQWGAREGPLCD+PIRNVKFKIVDA+IA EPLHRGT QIIPTARRVAYSAFLMA PRLME
Sbjct: 785  FQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGTGQIIPTARRVAYSAFLMATPRLME 844

Query: 78   PVYYVEIQTPIDCVFAIYTVLSRCRG 1
            PVYYVEIQTPIDCV AIYTVLSR RG
Sbjct: 845  PVYYVEIQTPIDCVSAIYTVLSRRRG 870



 Score =  136 bits (343), Expect(3) = 1e-97
 Identities = 67/76 (88%), Positives = 71/76 (93%)
 Frame = -1

Query: 725 QGVDASIMKTATLCNVNYDEDIYILMPLLFNTLPVVKMATEPLNPSELPKMVEGLRKISK 546
           +GVDASIMKTATLCN++YDED+YI  PLLFNTLPVVK ATEPLNPSELPKMVEGLRKISK
Sbjct: 568 EGVDASIMKTATLCNLDYDEDVYIFRPLLFNTLPVVKTATEPLNPSELPKMVEGLRKISK 627

Query: 545 S*PLATTKVEESGEHT 498
           S PLA TKVEESGEHT
Sbjct: 628 SYPLAITKVEESGEHT 643



 Score =  106 bits (264), Expect(3) = 1e-97
 Identities = 56/89 (62%), Positives = 65/89 (73%), Gaps = 10/89 (11%)
 Frame = -2

Query: 490 VADLVVSFCETVVESSYIHEMFC*NTQQR----------EQNHYEDIENGIVSIDWNRKT 341
           VAD VVSFCETVVESS + + F     ++          E+   EDIENG+VSIDW+RK 
Sbjct: 670 VADPVVSFCETVVESSSM-KCFAETPNKKNKITMIAEPLEKGLAEDIENGVVSIDWHRKK 728

Query: 340 IGEFFQTKYDWDLLAARSIWAFGPDKQVP 254
           +G+FFQTKYDWDLLAARSIWAFGPDKQ P
Sbjct: 729 LGDFFQTKYDWDLLAARSIWAFGPDKQGP 757



 Score =  114 bits (285), Expect = 4e-23
 Identities = 53/71 (74%), Positives = 60/71 (84%)
 Frame = -2

Query: 934 DHISAASATVGGIEAIHPVAGNVNFASANVGWSFTLHSFAKLYVKLHGIPFDAAKFASRL 755
           +HISAAS+T G ++ I P AGNV FASA+ GWSFTL SFAKLYVKLHG+PFDA KFASRL
Sbjct: 299 NHISAASSTAGNVQIIDPAAGNVCFASASAGWSFTLQSFAKLYVKLHGVPFDANKFASRL 358

Query: 754 *GDIYYHPDTR 722
            GD+YYHPD R
Sbjct: 359 WGDMYYHPDAR 369


>emb|CBI25589.3| unnamed protein product [Vitis vinifera]
          Length = 931

 Score =  162 bits (411), Expect(3) = 1e-97
 Identities = 79/86 (91%), Positives = 81/86 (94%)
 Frame = -3

Query: 258 FQWGAREGPLCDKPIRNVKFKIVDAKIAQEPLHRGTSQIIPTARRVAYSAFLMAMPRLME 79
           FQWGAREGPLCD+PIRNVKFKIVDA+IA EPLHRGT QIIPTARRVAYSAFLMA PRLME
Sbjct: 728 FQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGTGQIIPTARRVAYSAFLMATPRLME 787

Query: 78  PVYYVEIQTPIDCVFAIYTVLSRCRG 1
           PVYYVEIQTPIDCV AIYTVLSR RG
Sbjct: 788 PVYYVEIQTPIDCVSAIYTVLSRRRG 813



 Score =  136 bits (343), Expect(3) = 1e-97
 Identities = 67/76 (88%), Positives = 71/76 (93%)
 Frame = -1

Query: 725 QGVDASIMKTATLCNVNYDEDIYILMPLLFNTLPVVKMATEPLNPSELPKMVEGLRKISK 546
           +GVDASIMKTATLCN++YDED+YI  PLLFNTLPVVK ATEPLNPSELPKMVEGLRKISK
Sbjct: 511 EGVDASIMKTATLCNLDYDEDVYIFRPLLFNTLPVVKTATEPLNPSELPKMVEGLRKISK 570

Query: 545 S*PLATTKVEESGEHT 498
           S PLA TKVEESGEHT
Sbjct: 571 SYPLAITKVEESGEHT 586



 Score =  106 bits (264), Expect(3) = 1e-97
 Identities = 56/89 (62%), Positives = 65/89 (73%), Gaps = 10/89 (11%)
 Frame = -2

Query: 490 VADLVVSFCETVVESSYIHEMFC*NTQQR----------EQNHYEDIENGIVSIDWNRKT 341
           VAD VVSFCETVVESS + + F     ++          E+   EDIENG+VSIDW+RK 
Sbjct: 613 VADPVVSFCETVVESSSM-KCFAETPNKKNKITMIAEPLEKGLAEDIENGVVSIDWHRKK 671

Query: 340 IGEFFQTKYDWDLLAARSIWAFGPDKQVP 254
           +G+FFQTKYDWDLLAARSIWAFGPDKQ P
Sbjct: 672 LGDFFQTKYDWDLLAARSIWAFGPDKQGP 700



 Score =  114 bits (285), Expect = 4e-23
 Identities = 53/71 (74%), Positives = 60/71 (84%)
 Frame = -2

Query: 934 DHISAASATVGGIEAIHPVAGNVNFASANVGWSFTLHSFAKLYVKLHGIPFDAAKFASRL 755
           +HISAAS+T G ++ I P AGNV FASA+ GWSFTL SFAKLYVKLHG+PFDA KFASRL
Sbjct: 242 NHISAASSTAGNVQIIDPAAGNVCFASASAGWSFTLQSFAKLYVKLHGVPFDANKFASRL 301

Query: 754 *GDIYYHPDTR 722
            GD+YYHPD R
Sbjct: 302 WGDMYYHPDAR 312


>ref|NP_172112.1| U5 small nuclear ribonucleoprotein component [Arabidopsis thaliana]
            gi|30679607|ref|NP_849600.1| U5 small nuclear
            ribonucleoprotein component [Arabidopsis thaliana]
            gi|8844127|gb|AAF80219.1|AC025290_8 Contains similarity
            to an U5 snRNP-specific protein 116 kD from Homo sapiens
            gi|4759280 and contains elongation factor G C-terminus
            PF|00679 and is a member of the elongation factor Tu
            family PF|00009 [Arabidopsis thaliana]
            gi|110741512|dbj|BAE98706.1| elongation factor like
            protein [Arabidopsis thaliana]
            gi|332189840|gb|AEE27961.1| U5 small nuclear
            ribonucleoprotein component [Arabidopsis thaliana]
            gi|332189841|gb|AEE27962.1| U5 small nuclear
            ribonucleoprotein component [Arabidopsis thaliana]
          Length = 987

 Score =  160 bits (404), Expect(3) = 3e-95
 Identities = 77/86 (89%), Positives = 81/86 (94%)
 Frame = -3

Query: 258  FQWGAREGPLCDKPIRNVKFKIVDAKIAQEPLHRGTSQIIPTARRVAYSAFLMAMPRLME 79
            FQWGAREGPLCD+PIRNVKFKIVDA+IA EPLHRG+ Q+IPTARRVAYSAFLMA PRLME
Sbjct: 784  FQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQMIPTARRVAYSAFLMATPRLME 843

Query: 78   PVYYVEIQTPIDCVFAIYTVLSRCRG 1
            PVYYVEIQTPIDCV AIYTVLSR RG
Sbjct: 844  PVYYVEIQTPIDCVTAIYTVLSRRRG 869



 Score =  130 bits (328), Expect(3) = 3e-95
 Identities = 65/76 (85%), Positives = 68/76 (89%)
 Frame = -1

Query: 725 QGVDASIMKTATLCNVNYDEDIYILMPLLFNTLPVVKMATEPLNPSELPKMVEGLRKISK 546
           +GVDASIMKTATLCN +YDED+YI   L FNTLPVVK ATEPLNPSELPKMVEGLRKISK
Sbjct: 567 EGVDASIMKTATLCNASYDEDVYIFRALQFNTLPVVKTATEPLNPSELPKMVEGLRKISK 626

Query: 545 S*PLATTKVEESGEHT 498
           S PLA TKVEESGEHT
Sbjct: 627 SYPLAITKVEESGEHT 642



 Score =  106 bits (265), Expect(3) = 3e-95
 Identities = 57/91 (62%), Positives = 63/91 (69%), Gaps = 12/91 (13%)
 Frame = -2

Query: 490 VADLVVSFCETVVESSYIHEMFC*NTQQREQNHY------------EDIENGIVSIDWNR 347
           VAD VVSFCETVVESS    M C      ++N              EDIENG+VSIDWNR
Sbjct: 669 VADPVVSFCETVVESS---SMKCFAETPNKKNKITMIAEPLDRGLAEDIENGVVSIDWNR 725

Query: 346 KTIGEFFQTKYDWDLLAARSIWAFGPDKQVP 254
           K +G+FF+TKYDWDLLAARSIWAFGPDKQ P
Sbjct: 726 KQLGDFFRTKYDWDLLAARSIWAFGPDKQGP 756



 Score =  100 bits (249), Expect = 5e-19
 Identities = 47/71 (66%), Positives = 52/71 (73%)
 Frame = -2

Query: 934 DHISAASATVGGIEAIHPVAGNVNFASANVGWSFTLHSFAKLYVKLHGIPFDAAKFASRL 755
           +HISAAS T G +  I P AGNV FAS   GWSFTL SFAK+Y KLHG+  D  KFASRL
Sbjct: 298 NHISAASTTAGDLPLIDPAAGNVCFASGTAGWSFTLQSFAKMYAKLHGVAMDVDKFASRL 357

Query: 754 *GDIYYHPDTR 722
            GD+YYH DTR
Sbjct: 358 WGDVYYHSDTR 368


>ref|XP_002889592.1| hypothetical protein ARALYDRAFT_470642 [Arabidopsis lyrata subsp.
            lyrata] gi|297335434|gb|EFH65851.1| hypothetical protein
            ARALYDRAFT_470642 [Arabidopsis lyrata subsp. lyrata]
          Length = 987

 Score =  160 bits (404), Expect(3) = 3e-95
 Identities = 77/86 (89%), Positives = 81/86 (94%)
 Frame = -3

Query: 258  FQWGAREGPLCDKPIRNVKFKIVDAKIAQEPLHRGTSQIIPTARRVAYSAFLMAMPRLME 79
            FQWGAREGPLCD+PIRNVKFKIVDA+IA EPLHRG+ Q+IPTARRVAYSAFLMA PRLME
Sbjct: 784  FQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQMIPTARRVAYSAFLMATPRLME 843

Query: 78   PVYYVEIQTPIDCVFAIYTVLSRCRG 1
            PVYYVEIQTPIDCV AIYTVLSR RG
Sbjct: 844  PVYYVEIQTPIDCVTAIYTVLSRRRG 869



 Score =  130 bits (328), Expect(3) = 3e-95
 Identities = 65/76 (85%), Positives = 68/76 (89%)
 Frame = -1

Query: 725 QGVDASIMKTATLCNVNYDEDIYILMPLLFNTLPVVKMATEPLNPSELPKMVEGLRKISK 546
           +GVDASIMKTATLCN +YDED+YI   L FNTLPVVK ATEPLNPSELPKMVEGLRKISK
Sbjct: 567 EGVDASIMKTATLCNASYDEDVYIFRALQFNTLPVVKTATEPLNPSELPKMVEGLRKISK 626

Query: 545 S*PLATTKVEESGEHT 498
           S PLA TKVEESGEHT
Sbjct: 627 SYPLAITKVEESGEHT 642



 Score =  106 bits (265), Expect(3) = 3e-95
 Identities = 57/91 (62%), Positives = 63/91 (69%), Gaps = 12/91 (13%)
 Frame = -2

Query: 490 VADLVVSFCETVVESSYIHEMFC*NTQQREQNHY------------EDIENGIVSIDWNR 347
           VAD VVSFCETVVESS    M C      ++N              EDIENG+VSIDWNR
Sbjct: 669 VADPVVSFCETVVESS---SMKCFAETPNKKNKITMIAEPLDRGLAEDIENGVVSIDWNR 725

Query: 346 KTIGEFFQTKYDWDLLAARSIWAFGPDKQVP 254
           K +G+FF+TKYDWDLLAARSIWAFGPDKQ P
Sbjct: 726 KQLGDFFRTKYDWDLLAARSIWAFGPDKQGP 756



 Score =  102 bits (255), Expect = 1e-19
 Identities = 47/71 (66%), Positives = 53/71 (74%)
 Frame = -2

Query: 934 DHISAASATVGGIEAIHPVAGNVNFASANVGWSFTLHSFAKLYVKLHGIPFDAAKFASRL 755
           +HISAAS T G +  I P AGNV FAS   GWSFTL SF+K+Y KLHG+  D  KFASRL
Sbjct: 298 NHISAASTTAGNLPLIDPAAGNVCFASGTAGWSFTLQSFSKMYAKLHGVAMDVDKFASRL 357

Query: 754 *GDIYYHPDTR 722
            GD+YYHPDTR
Sbjct: 358 WGDVYYHPDTR 368


>ref|XP_004139267.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like
            [Cucumis sativus] gi|449493675|ref|XP_004159406.1|
            PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein
            component-like [Cucumis sativus]
          Length = 988

 Score =  160 bits (404), Expect(3) = 1e-94
 Identities = 77/86 (89%), Positives = 81/86 (94%)
 Frame = -3

Query: 258  FQWGAREGPLCDKPIRNVKFKIVDAKIAQEPLHRGTSQIIPTARRVAYSAFLMAMPRLME 79
            FQWGAREGPLCD+PIRNVKFKIVDA+IA EPLHRG+ QIIPTARRVAYS+FLMA PRLME
Sbjct: 785  FQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSSFLMATPRLME 844

Query: 78   PVYYVEIQTPIDCVFAIYTVLSRCRG 1
            PVYYVEIQTPIDCV AIYTVLSR RG
Sbjct: 845  PVYYVEIQTPIDCVSAIYTVLSRRRG 870



 Score =  131 bits (330), Expect(3) = 1e-94
 Identities = 66/76 (86%), Positives = 69/76 (90%)
 Frame = -1

Query: 725 QGVDASIMKTATLCNVNYDEDIYILMPLLFNTLPVVKMATEPLNPSELPKMVEGLRKISK 546
           +GVDASIMKTATL NV+YDED+YI  PL FNTLPVVK ATEPLNPSELPKMVEGLRKISK
Sbjct: 568 EGVDASIMKTATLSNVDYDEDVYIFRPLQFNTLPVVKTATEPLNPSELPKMVEGLRKISK 627

Query: 545 S*PLATTKVEESGEHT 498
           S PLA TKVEESGEHT
Sbjct: 628 SYPLAITKVEESGEHT 643



 Score =  103 bits (258), Expect(3) = 1e-94
 Identities = 54/89 (60%), Positives = 65/89 (73%), Gaps = 10/89 (11%)
 Frame = -2

Query: 490 VADLVVSFCETVVESSYIHEMFC*NTQQR----------EQNHYEDIENGIVSIDWNRKT 341
           VAD VVSFCETVVESS + + F     ++          E+   EDIENG+VS+DW+RK 
Sbjct: 670 VADPVVSFCETVVESSSM-KCFAETPNKKNKITMIAEPLERGLAEDIENGVVSLDWSRKK 728

Query: 340 IGEFFQTKYDWDLLAARSIWAFGPDKQVP 254
           +G+FFQTKY+WDLLAARSIWAFGPDKQ P
Sbjct: 729 LGDFFQTKYEWDLLAARSIWAFGPDKQGP 757



 Score =  117 bits (292), Expect = 6e-24
 Identities = 55/72 (76%), Positives = 60/72 (83%)
 Frame = -2

Query: 934 DHISAASATVGGIEAIHPVAGNVNFASANVGWSFTLHSFAKLYVKLHGIPFDAAKFASRL 755
           +HISAAS+T G ++ I P AGNV FASA  GWSFTL SFAKLYVKLHGIPFDA KFA+RL
Sbjct: 299 NHISAASSTAGNVQVIDPAAGNVCFASATAGWSFTLQSFAKLYVKLHGIPFDADKFATRL 358

Query: 754 *GDIYYHPDTRG 719
            GD YYHPDTRG
Sbjct: 359 WGDYYYHPDTRG 370


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