BLASTX nr result
ID: Coptis24_contig00007424
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00007424
(989 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002267199.1| PREDICTED: 116 kDa U5 small nuclear ribonucl... 162 1e-97
emb|CBI25589.3| unnamed protein product [Vitis vinifera] 162 1e-97
ref|NP_172112.1| U5 small nuclear ribonucleoprotein component [A... 160 3e-95
ref|XP_002889592.1| hypothetical protein ARALYDRAFT_470642 [Arab... 160 3e-95
ref|XP_004139267.1| PREDICTED: 116 kDa U5 small nuclear ribonucl... 160 1e-94
>ref|XP_002267199.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component
[Vitis vinifera] gi|147858113|emb|CAN81413.1|
hypothetical protein VITISV_031170 [Vitis vinifera]
Length = 988
Score = 162 bits (411), Expect(3) = 1e-97
Identities = 79/86 (91%), Positives = 81/86 (94%)
Frame = -3
Query: 258 FQWGAREGPLCDKPIRNVKFKIVDAKIAQEPLHRGTSQIIPTARRVAYSAFLMAMPRLME 79
FQWGAREGPLCD+PIRNVKFKIVDA+IA EPLHRGT QIIPTARRVAYSAFLMA PRLME
Sbjct: 785 FQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGTGQIIPTARRVAYSAFLMATPRLME 844
Query: 78 PVYYVEIQTPIDCVFAIYTVLSRCRG 1
PVYYVEIQTPIDCV AIYTVLSR RG
Sbjct: 845 PVYYVEIQTPIDCVSAIYTVLSRRRG 870
Score = 136 bits (343), Expect(3) = 1e-97
Identities = 67/76 (88%), Positives = 71/76 (93%)
Frame = -1
Query: 725 QGVDASIMKTATLCNVNYDEDIYILMPLLFNTLPVVKMATEPLNPSELPKMVEGLRKISK 546
+GVDASIMKTATLCN++YDED+YI PLLFNTLPVVK ATEPLNPSELPKMVEGLRKISK
Sbjct: 568 EGVDASIMKTATLCNLDYDEDVYIFRPLLFNTLPVVKTATEPLNPSELPKMVEGLRKISK 627
Query: 545 S*PLATTKVEESGEHT 498
S PLA TKVEESGEHT
Sbjct: 628 SYPLAITKVEESGEHT 643
Score = 106 bits (264), Expect(3) = 1e-97
Identities = 56/89 (62%), Positives = 65/89 (73%), Gaps = 10/89 (11%)
Frame = -2
Query: 490 VADLVVSFCETVVESSYIHEMFC*NTQQR----------EQNHYEDIENGIVSIDWNRKT 341
VAD VVSFCETVVESS + + F ++ E+ EDIENG+VSIDW+RK
Sbjct: 670 VADPVVSFCETVVESSSM-KCFAETPNKKNKITMIAEPLEKGLAEDIENGVVSIDWHRKK 728
Query: 340 IGEFFQTKYDWDLLAARSIWAFGPDKQVP 254
+G+FFQTKYDWDLLAARSIWAFGPDKQ P
Sbjct: 729 LGDFFQTKYDWDLLAARSIWAFGPDKQGP 757
Score = 114 bits (285), Expect = 4e-23
Identities = 53/71 (74%), Positives = 60/71 (84%)
Frame = -2
Query: 934 DHISAASATVGGIEAIHPVAGNVNFASANVGWSFTLHSFAKLYVKLHGIPFDAAKFASRL 755
+HISAAS+T G ++ I P AGNV FASA+ GWSFTL SFAKLYVKLHG+PFDA KFASRL
Sbjct: 299 NHISAASSTAGNVQIIDPAAGNVCFASASAGWSFTLQSFAKLYVKLHGVPFDANKFASRL 358
Query: 754 *GDIYYHPDTR 722
GD+YYHPD R
Sbjct: 359 WGDMYYHPDAR 369
>emb|CBI25589.3| unnamed protein product [Vitis vinifera]
Length = 931
Score = 162 bits (411), Expect(3) = 1e-97
Identities = 79/86 (91%), Positives = 81/86 (94%)
Frame = -3
Query: 258 FQWGAREGPLCDKPIRNVKFKIVDAKIAQEPLHRGTSQIIPTARRVAYSAFLMAMPRLME 79
FQWGAREGPLCD+PIRNVKFKIVDA+IA EPLHRGT QIIPTARRVAYSAFLMA PRLME
Sbjct: 728 FQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGTGQIIPTARRVAYSAFLMATPRLME 787
Query: 78 PVYYVEIQTPIDCVFAIYTVLSRCRG 1
PVYYVEIQTPIDCV AIYTVLSR RG
Sbjct: 788 PVYYVEIQTPIDCVSAIYTVLSRRRG 813
Score = 136 bits (343), Expect(3) = 1e-97
Identities = 67/76 (88%), Positives = 71/76 (93%)
Frame = -1
Query: 725 QGVDASIMKTATLCNVNYDEDIYILMPLLFNTLPVVKMATEPLNPSELPKMVEGLRKISK 546
+GVDASIMKTATLCN++YDED+YI PLLFNTLPVVK ATEPLNPSELPKMVEGLRKISK
Sbjct: 511 EGVDASIMKTATLCNLDYDEDVYIFRPLLFNTLPVVKTATEPLNPSELPKMVEGLRKISK 570
Query: 545 S*PLATTKVEESGEHT 498
S PLA TKVEESGEHT
Sbjct: 571 SYPLAITKVEESGEHT 586
Score = 106 bits (264), Expect(3) = 1e-97
Identities = 56/89 (62%), Positives = 65/89 (73%), Gaps = 10/89 (11%)
Frame = -2
Query: 490 VADLVVSFCETVVESSYIHEMFC*NTQQR----------EQNHYEDIENGIVSIDWNRKT 341
VAD VVSFCETVVESS + + F ++ E+ EDIENG+VSIDW+RK
Sbjct: 613 VADPVVSFCETVVESSSM-KCFAETPNKKNKITMIAEPLEKGLAEDIENGVVSIDWHRKK 671
Query: 340 IGEFFQTKYDWDLLAARSIWAFGPDKQVP 254
+G+FFQTKYDWDLLAARSIWAFGPDKQ P
Sbjct: 672 LGDFFQTKYDWDLLAARSIWAFGPDKQGP 700
Score = 114 bits (285), Expect = 4e-23
Identities = 53/71 (74%), Positives = 60/71 (84%)
Frame = -2
Query: 934 DHISAASATVGGIEAIHPVAGNVNFASANVGWSFTLHSFAKLYVKLHGIPFDAAKFASRL 755
+HISAAS+T G ++ I P AGNV FASA+ GWSFTL SFAKLYVKLHG+PFDA KFASRL
Sbjct: 242 NHISAASSTAGNVQIIDPAAGNVCFASASAGWSFTLQSFAKLYVKLHGVPFDANKFASRL 301
Query: 754 *GDIYYHPDTR 722
GD+YYHPD R
Sbjct: 302 WGDMYYHPDAR 312
>ref|NP_172112.1| U5 small nuclear ribonucleoprotein component [Arabidopsis thaliana]
gi|30679607|ref|NP_849600.1| U5 small nuclear
ribonucleoprotein component [Arabidopsis thaliana]
gi|8844127|gb|AAF80219.1|AC025290_8 Contains similarity
to an U5 snRNP-specific protein 116 kD from Homo sapiens
gi|4759280 and contains elongation factor G C-terminus
PF|00679 and is a member of the elongation factor Tu
family PF|00009 [Arabidopsis thaliana]
gi|110741512|dbj|BAE98706.1| elongation factor like
protein [Arabidopsis thaliana]
gi|332189840|gb|AEE27961.1| U5 small nuclear
ribonucleoprotein component [Arabidopsis thaliana]
gi|332189841|gb|AEE27962.1| U5 small nuclear
ribonucleoprotein component [Arabidopsis thaliana]
Length = 987
Score = 160 bits (404), Expect(3) = 3e-95
Identities = 77/86 (89%), Positives = 81/86 (94%)
Frame = -3
Query: 258 FQWGAREGPLCDKPIRNVKFKIVDAKIAQEPLHRGTSQIIPTARRVAYSAFLMAMPRLME 79
FQWGAREGPLCD+PIRNVKFKIVDA+IA EPLHRG+ Q+IPTARRVAYSAFLMA PRLME
Sbjct: 784 FQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQMIPTARRVAYSAFLMATPRLME 843
Query: 78 PVYYVEIQTPIDCVFAIYTVLSRCRG 1
PVYYVEIQTPIDCV AIYTVLSR RG
Sbjct: 844 PVYYVEIQTPIDCVTAIYTVLSRRRG 869
Score = 130 bits (328), Expect(3) = 3e-95
Identities = 65/76 (85%), Positives = 68/76 (89%)
Frame = -1
Query: 725 QGVDASIMKTATLCNVNYDEDIYILMPLLFNTLPVVKMATEPLNPSELPKMVEGLRKISK 546
+GVDASIMKTATLCN +YDED+YI L FNTLPVVK ATEPLNPSELPKMVEGLRKISK
Sbjct: 567 EGVDASIMKTATLCNASYDEDVYIFRALQFNTLPVVKTATEPLNPSELPKMVEGLRKISK 626
Query: 545 S*PLATTKVEESGEHT 498
S PLA TKVEESGEHT
Sbjct: 627 SYPLAITKVEESGEHT 642
Score = 106 bits (265), Expect(3) = 3e-95
Identities = 57/91 (62%), Positives = 63/91 (69%), Gaps = 12/91 (13%)
Frame = -2
Query: 490 VADLVVSFCETVVESSYIHEMFC*NTQQREQNHY------------EDIENGIVSIDWNR 347
VAD VVSFCETVVESS M C ++N EDIENG+VSIDWNR
Sbjct: 669 VADPVVSFCETVVESS---SMKCFAETPNKKNKITMIAEPLDRGLAEDIENGVVSIDWNR 725
Query: 346 KTIGEFFQTKYDWDLLAARSIWAFGPDKQVP 254
K +G+FF+TKYDWDLLAARSIWAFGPDKQ P
Sbjct: 726 KQLGDFFRTKYDWDLLAARSIWAFGPDKQGP 756
Score = 100 bits (249), Expect = 5e-19
Identities = 47/71 (66%), Positives = 52/71 (73%)
Frame = -2
Query: 934 DHISAASATVGGIEAIHPVAGNVNFASANVGWSFTLHSFAKLYVKLHGIPFDAAKFASRL 755
+HISAAS T G + I P AGNV FAS GWSFTL SFAK+Y KLHG+ D KFASRL
Sbjct: 298 NHISAASTTAGDLPLIDPAAGNVCFASGTAGWSFTLQSFAKMYAKLHGVAMDVDKFASRL 357
Query: 754 *GDIYYHPDTR 722
GD+YYH DTR
Sbjct: 358 WGDVYYHSDTR 368
>ref|XP_002889592.1| hypothetical protein ARALYDRAFT_470642 [Arabidopsis lyrata subsp.
lyrata] gi|297335434|gb|EFH65851.1| hypothetical protein
ARALYDRAFT_470642 [Arabidopsis lyrata subsp. lyrata]
Length = 987
Score = 160 bits (404), Expect(3) = 3e-95
Identities = 77/86 (89%), Positives = 81/86 (94%)
Frame = -3
Query: 258 FQWGAREGPLCDKPIRNVKFKIVDAKIAQEPLHRGTSQIIPTARRVAYSAFLMAMPRLME 79
FQWGAREGPLCD+PIRNVKFKIVDA+IA EPLHRG+ Q+IPTARRVAYSAFLMA PRLME
Sbjct: 784 FQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQMIPTARRVAYSAFLMATPRLME 843
Query: 78 PVYYVEIQTPIDCVFAIYTVLSRCRG 1
PVYYVEIQTPIDCV AIYTVLSR RG
Sbjct: 844 PVYYVEIQTPIDCVTAIYTVLSRRRG 869
Score = 130 bits (328), Expect(3) = 3e-95
Identities = 65/76 (85%), Positives = 68/76 (89%)
Frame = -1
Query: 725 QGVDASIMKTATLCNVNYDEDIYILMPLLFNTLPVVKMATEPLNPSELPKMVEGLRKISK 546
+GVDASIMKTATLCN +YDED+YI L FNTLPVVK ATEPLNPSELPKMVEGLRKISK
Sbjct: 567 EGVDASIMKTATLCNASYDEDVYIFRALQFNTLPVVKTATEPLNPSELPKMVEGLRKISK 626
Query: 545 S*PLATTKVEESGEHT 498
S PLA TKVEESGEHT
Sbjct: 627 SYPLAITKVEESGEHT 642
Score = 106 bits (265), Expect(3) = 3e-95
Identities = 57/91 (62%), Positives = 63/91 (69%), Gaps = 12/91 (13%)
Frame = -2
Query: 490 VADLVVSFCETVVESSYIHEMFC*NTQQREQNHY------------EDIENGIVSIDWNR 347
VAD VVSFCETVVESS M C ++N EDIENG+VSIDWNR
Sbjct: 669 VADPVVSFCETVVESS---SMKCFAETPNKKNKITMIAEPLDRGLAEDIENGVVSIDWNR 725
Query: 346 KTIGEFFQTKYDWDLLAARSIWAFGPDKQVP 254
K +G+FF+TKYDWDLLAARSIWAFGPDKQ P
Sbjct: 726 KQLGDFFRTKYDWDLLAARSIWAFGPDKQGP 756
Score = 102 bits (255), Expect = 1e-19
Identities = 47/71 (66%), Positives = 53/71 (74%)
Frame = -2
Query: 934 DHISAASATVGGIEAIHPVAGNVNFASANVGWSFTLHSFAKLYVKLHGIPFDAAKFASRL 755
+HISAAS T G + I P AGNV FAS GWSFTL SF+K+Y KLHG+ D KFASRL
Sbjct: 298 NHISAASTTAGNLPLIDPAAGNVCFASGTAGWSFTLQSFSKMYAKLHGVAMDVDKFASRL 357
Query: 754 *GDIYYHPDTR 722
GD+YYHPDTR
Sbjct: 358 WGDVYYHPDTR 368
>ref|XP_004139267.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like
[Cucumis sativus] gi|449493675|ref|XP_004159406.1|
PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein
component-like [Cucumis sativus]
Length = 988
Score = 160 bits (404), Expect(3) = 1e-94
Identities = 77/86 (89%), Positives = 81/86 (94%)
Frame = -3
Query: 258 FQWGAREGPLCDKPIRNVKFKIVDAKIAQEPLHRGTSQIIPTARRVAYSAFLMAMPRLME 79
FQWGAREGPLCD+PIRNVKFKIVDA+IA EPLHRG+ QIIPTARRVAYS+FLMA PRLME
Sbjct: 785 FQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSSFLMATPRLME 844
Query: 78 PVYYVEIQTPIDCVFAIYTVLSRCRG 1
PVYYVEIQTPIDCV AIYTVLSR RG
Sbjct: 845 PVYYVEIQTPIDCVSAIYTVLSRRRG 870
Score = 131 bits (330), Expect(3) = 1e-94
Identities = 66/76 (86%), Positives = 69/76 (90%)
Frame = -1
Query: 725 QGVDASIMKTATLCNVNYDEDIYILMPLLFNTLPVVKMATEPLNPSELPKMVEGLRKISK 546
+GVDASIMKTATL NV+YDED+YI PL FNTLPVVK ATEPLNPSELPKMVEGLRKISK
Sbjct: 568 EGVDASIMKTATLSNVDYDEDVYIFRPLQFNTLPVVKTATEPLNPSELPKMVEGLRKISK 627
Query: 545 S*PLATTKVEESGEHT 498
S PLA TKVEESGEHT
Sbjct: 628 SYPLAITKVEESGEHT 643
Score = 103 bits (258), Expect(3) = 1e-94
Identities = 54/89 (60%), Positives = 65/89 (73%), Gaps = 10/89 (11%)
Frame = -2
Query: 490 VADLVVSFCETVVESSYIHEMFC*NTQQR----------EQNHYEDIENGIVSIDWNRKT 341
VAD VVSFCETVVESS + + F ++ E+ EDIENG+VS+DW+RK
Sbjct: 670 VADPVVSFCETVVESSSM-KCFAETPNKKNKITMIAEPLERGLAEDIENGVVSLDWSRKK 728
Query: 340 IGEFFQTKYDWDLLAARSIWAFGPDKQVP 254
+G+FFQTKY+WDLLAARSIWAFGPDKQ P
Sbjct: 729 LGDFFQTKYEWDLLAARSIWAFGPDKQGP 757
Score = 117 bits (292), Expect = 6e-24
Identities = 55/72 (76%), Positives = 60/72 (83%)
Frame = -2
Query: 934 DHISAASATVGGIEAIHPVAGNVNFASANVGWSFTLHSFAKLYVKLHGIPFDAAKFASRL 755
+HISAAS+T G ++ I P AGNV FASA GWSFTL SFAKLYVKLHGIPFDA KFA+RL
Sbjct: 299 NHISAASSTAGNVQVIDPAAGNVCFASATAGWSFTLQSFAKLYVKLHGIPFDADKFATRL 358
Query: 754 *GDIYYHPDTRG 719
GD YYHPDTRG
Sbjct: 359 WGDYYYHPDTRG 370