BLASTX nr result
ID: Coptis24_contig00007424
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00007424 (989 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002267199.1| PREDICTED: 116 kDa U5 small nuclear ribonucl... 162 1e-97 emb|CBI25589.3| unnamed protein product [Vitis vinifera] 162 1e-97 ref|NP_172112.1| U5 small nuclear ribonucleoprotein component [A... 160 3e-95 ref|XP_002889592.1| hypothetical protein ARALYDRAFT_470642 [Arab... 160 3e-95 ref|XP_004139267.1| PREDICTED: 116 kDa U5 small nuclear ribonucl... 160 1e-94 >ref|XP_002267199.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component [Vitis vinifera] gi|147858113|emb|CAN81413.1| hypothetical protein VITISV_031170 [Vitis vinifera] Length = 988 Score = 162 bits (411), Expect(3) = 1e-97 Identities = 79/86 (91%), Positives = 81/86 (94%) Frame = -3 Query: 258 FQWGAREGPLCDKPIRNVKFKIVDAKIAQEPLHRGTSQIIPTARRVAYSAFLMAMPRLME 79 FQWGAREGPLCD+PIRNVKFKIVDA+IA EPLHRGT QIIPTARRVAYSAFLMA PRLME Sbjct: 785 FQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGTGQIIPTARRVAYSAFLMATPRLME 844 Query: 78 PVYYVEIQTPIDCVFAIYTVLSRCRG 1 PVYYVEIQTPIDCV AIYTVLSR RG Sbjct: 845 PVYYVEIQTPIDCVSAIYTVLSRRRG 870 Score = 136 bits (343), Expect(3) = 1e-97 Identities = 67/76 (88%), Positives = 71/76 (93%) Frame = -1 Query: 725 QGVDASIMKTATLCNVNYDEDIYILMPLLFNTLPVVKMATEPLNPSELPKMVEGLRKISK 546 +GVDASIMKTATLCN++YDED+YI PLLFNTLPVVK ATEPLNPSELPKMVEGLRKISK Sbjct: 568 EGVDASIMKTATLCNLDYDEDVYIFRPLLFNTLPVVKTATEPLNPSELPKMVEGLRKISK 627 Query: 545 S*PLATTKVEESGEHT 498 S PLA TKVEESGEHT Sbjct: 628 SYPLAITKVEESGEHT 643 Score = 106 bits (264), Expect(3) = 1e-97 Identities = 56/89 (62%), Positives = 65/89 (73%), Gaps = 10/89 (11%) Frame = -2 Query: 490 VADLVVSFCETVVESSYIHEMFC*NTQQR----------EQNHYEDIENGIVSIDWNRKT 341 VAD VVSFCETVVESS + + F ++ E+ EDIENG+VSIDW+RK Sbjct: 670 VADPVVSFCETVVESSSM-KCFAETPNKKNKITMIAEPLEKGLAEDIENGVVSIDWHRKK 728 Query: 340 IGEFFQTKYDWDLLAARSIWAFGPDKQVP 254 +G+FFQTKYDWDLLAARSIWAFGPDKQ P Sbjct: 729 LGDFFQTKYDWDLLAARSIWAFGPDKQGP 757 Score = 114 bits (285), Expect = 4e-23 Identities = 53/71 (74%), Positives = 60/71 (84%) Frame = -2 Query: 934 DHISAASATVGGIEAIHPVAGNVNFASANVGWSFTLHSFAKLYVKLHGIPFDAAKFASRL 755 +HISAAS+T G ++ I P AGNV FASA+ GWSFTL SFAKLYVKLHG+PFDA KFASRL Sbjct: 299 NHISAASSTAGNVQIIDPAAGNVCFASASAGWSFTLQSFAKLYVKLHGVPFDANKFASRL 358 Query: 754 *GDIYYHPDTR 722 GD+YYHPD R Sbjct: 359 WGDMYYHPDAR 369 >emb|CBI25589.3| unnamed protein product [Vitis vinifera] Length = 931 Score = 162 bits (411), Expect(3) = 1e-97 Identities = 79/86 (91%), Positives = 81/86 (94%) Frame = -3 Query: 258 FQWGAREGPLCDKPIRNVKFKIVDAKIAQEPLHRGTSQIIPTARRVAYSAFLMAMPRLME 79 FQWGAREGPLCD+PIRNVKFKIVDA+IA EPLHRGT QIIPTARRVAYSAFLMA PRLME Sbjct: 728 FQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGTGQIIPTARRVAYSAFLMATPRLME 787 Query: 78 PVYYVEIQTPIDCVFAIYTVLSRCRG 1 PVYYVEIQTPIDCV AIYTVLSR RG Sbjct: 788 PVYYVEIQTPIDCVSAIYTVLSRRRG 813 Score = 136 bits (343), Expect(3) = 1e-97 Identities = 67/76 (88%), Positives = 71/76 (93%) Frame = -1 Query: 725 QGVDASIMKTATLCNVNYDEDIYILMPLLFNTLPVVKMATEPLNPSELPKMVEGLRKISK 546 +GVDASIMKTATLCN++YDED+YI PLLFNTLPVVK ATEPLNPSELPKMVEGLRKISK Sbjct: 511 EGVDASIMKTATLCNLDYDEDVYIFRPLLFNTLPVVKTATEPLNPSELPKMVEGLRKISK 570 Query: 545 S*PLATTKVEESGEHT 498 S PLA TKVEESGEHT Sbjct: 571 SYPLAITKVEESGEHT 586 Score = 106 bits (264), Expect(3) = 1e-97 Identities = 56/89 (62%), Positives = 65/89 (73%), Gaps = 10/89 (11%) Frame = -2 Query: 490 VADLVVSFCETVVESSYIHEMFC*NTQQR----------EQNHYEDIENGIVSIDWNRKT 341 VAD VVSFCETVVESS + + F ++ E+ EDIENG+VSIDW+RK Sbjct: 613 VADPVVSFCETVVESSSM-KCFAETPNKKNKITMIAEPLEKGLAEDIENGVVSIDWHRKK 671 Query: 340 IGEFFQTKYDWDLLAARSIWAFGPDKQVP 254 +G+FFQTKYDWDLLAARSIWAFGPDKQ P Sbjct: 672 LGDFFQTKYDWDLLAARSIWAFGPDKQGP 700 Score = 114 bits (285), Expect = 4e-23 Identities = 53/71 (74%), Positives = 60/71 (84%) Frame = -2 Query: 934 DHISAASATVGGIEAIHPVAGNVNFASANVGWSFTLHSFAKLYVKLHGIPFDAAKFASRL 755 +HISAAS+T G ++ I P AGNV FASA+ GWSFTL SFAKLYVKLHG+PFDA KFASRL Sbjct: 242 NHISAASSTAGNVQIIDPAAGNVCFASASAGWSFTLQSFAKLYVKLHGVPFDANKFASRL 301 Query: 754 *GDIYYHPDTR 722 GD+YYHPD R Sbjct: 302 WGDMYYHPDAR 312 >ref|NP_172112.1| U5 small nuclear ribonucleoprotein component [Arabidopsis thaliana] gi|30679607|ref|NP_849600.1| U5 small nuclear ribonucleoprotein component [Arabidopsis thaliana] gi|8844127|gb|AAF80219.1|AC025290_8 Contains similarity to an U5 snRNP-specific protein 116 kD from Homo sapiens gi|4759280 and contains elongation factor G C-terminus PF|00679 and is a member of the elongation factor Tu family PF|00009 [Arabidopsis thaliana] gi|110741512|dbj|BAE98706.1| elongation factor like protein [Arabidopsis thaliana] gi|332189840|gb|AEE27961.1| U5 small nuclear ribonucleoprotein component [Arabidopsis thaliana] gi|332189841|gb|AEE27962.1| U5 small nuclear ribonucleoprotein component [Arabidopsis thaliana] Length = 987 Score = 160 bits (404), Expect(3) = 3e-95 Identities = 77/86 (89%), Positives = 81/86 (94%) Frame = -3 Query: 258 FQWGAREGPLCDKPIRNVKFKIVDAKIAQEPLHRGTSQIIPTARRVAYSAFLMAMPRLME 79 FQWGAREGPLCD+PIRNVKFKIVDA+IA EPLHRG+ Q+IPTARRVAYSAFLMA PRLME Sbjct: 784 FQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQMIPTARRVAYSAFLMATPRLME 843 Query: 78 PVYYVEIQTPIDCVFAIYTVLSRCRG 1 PVYYVEIQTPIDCV AIYTVLSR RG Sbjct: 844 PVYYVEIQTPIDCVTAIYTVLSRRRG 869 Score = 130 bits (328), Expect(3) = 3e-95 Identities = 65/76 (85%), Positives = 68/76 (89%) Frame = -1 Query: 725 QGVDASIMKTATLCNVNYDEDIYILMPLLFNTLPVVKMATEPLNPSELPKMVEGLRKISK 546 +GVDASIMKTATLCN +YDED+YI L FNTLPVVK ATEPLNPSELPKMVEGLRKISK Sbjct: 567 EGVDASIMKTATLCNASYDEDVYIFRALQFNTLPVVKTATEPLNPSELPKMVEGLRKISK 626 Query: 545 S*PLATTKVEESGEHT 498 S PLA TKVEESGEHT Sbjct: 627 SYPLAITKVEESGEHT 642 Score = 106 bits (265), Expect(3) = 3e-95 Identities = 57/91 (62%), Positives = 63/91 (69%), Gaps = 12/91 (13%) Frame = -2 Query: 490 VADLVVSFCETVVESSYIHEMFC*NTQQREQNHY------------EDIENGIVSIDWNR 347 VAD VVSFCETVVESS M C ++N EDIENG+VSIDWNR Sbjct: 669 VADPVVSFCETVVESS---SMKCFAETPNKKNKITMIAEPLDRGLAEDIENGVVSIDWNR 725 Query: 346 KTIGEFFQTKYDWDLLAARSIWAFGPDKQVP 254 K +G+FF+TKYDWDLLAARSIWAFGPDKQ P Sbjct: 726 KQLGDFFRTKYDWDLLAARSIWAFGPDKQGP 756 Score = 100 bits (249), Expect = 5e-19 Identities = 47/71 (66%), Positives = 52/71 (73%) Frame = -2 Query: 934 DHISAASATVGGIEAIHPVAGNVNFASANVGWSFTLHSFAKLYVKLHGIPFDAAKFASRL 755 +HISAAS T G + I P AGNV FAS GWSFTL SFAK+Y KLHG+ D KFASRL Sbjct: 298 NHISAASTTAGDLPLIDPAAGNVCFASGTAGWSFTLQSFAKMYAKLHGVAMDVDKFASRL 357 Query: 754 *GDIYYHPDTR 722 GD+YYH DTR Sbjct: 358 WGDVYYHSDTR 368 >ref|XP_002889592.1| hypothetical protein ARALYDRAFT_470642 [Arabidopsis lyrata subsp. lyrata] gi|297335434|gb|EFH65851.1| hypothetical protein ARALYDRAFT_470642 [Arabidopsis lyrata subsp. lyrata] Length = 987 Score = 160 bits (404), Expect(3) = 3e-95 Identities = 77/86 (89%), Positives = 81/86 (94%) Frame = -3 Query: 258 FQWGAREGPLCDKPIRNVKFKIVDAKIAQEPLHRGTSQIIPTARRVAYSAFLMAMPRLME 79 FQWGAREGPLCD+PIRNVKFKIVDA+IA EPLHRG+ Q+IPTARRVAYSAFLMA PRLME Sbjct: 784 FQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQMIPTARRVAYSAFLMATPRLME 843 Query: 78 PVYYVEIQTPIDCVFAIYTVLSRCRG 1 PVYYVEIQTPIDCV AIYTVLSR RG Sbjct: 844 PVYYVEIQTPIDCVTAIYTVLSRRRG 869 Score = 130 bits (328), Expect(3) = 3e-95 Identities = 65/76 (85%), Positives = 68/76 (89%) Frame = -1 Query: 725 QGVDASIMKTATLCNVNYDEDIYILMPLLFNTLPVVKMATEPLNPSELPKMVEGLRKISK 546 +GVDASIMKTATLCN +YDED+YI L FNTLPVVK ATEPLNPSELPKMVEGLRKISK Sbjct: 567 EGVDASIMKTATLCNASYDEDVYIFRALQFNTLPVVKTATEPLNPSELPKMVEGLRKISK 626 Query: 545 S*PLATTKVEESGEHT 498 S PLA TKVEESGEHT Sbjct: 627 SYPLAITKVEESGEHT 642 Score = 106 bits (265), Expect(3) = 3e-95 Identities = 57/91 (62%), Positives = 63/91 (69%), Gaps = 12/91 (13%) Frame = -2 Query: 490 VADLVVSFCETVVESSYIHEMFC*NTQQREQNHY------------EDIENGIVSIDWNR 347 VAD VVSFCETVVESS M C ++N EDIENG+VSIDWNR Sbjct: 669 VADPVVSFCETVVESS---SMKCFAETPNKKNKITMIAEPLDRGLAEDIENGVVSIDWNR 725 Query: 346 KTIGEFFQTKYDWDLLAARSIWAFGPDKQVP 254 K +G+FF+TKYDWDLLAARSIWAFGPDKQ P Sbjct: 726 KQLGDFFRTKYDWDLLAARSIWAFGPDKQGP 756 Score = 102 bits (255), Expect = 1e-19 Identities = 47/71 (66%), Positives = 53/71 (74%) Frame = -2 Query: 934 DHISAASATVGGIEAIHPVAGNVNFASANVGWSFTLHSFAKLYVKLHGIPFDAAKFASRL 755 +HISAAS T G + I P AGNV FAS GWSFTL SF+K+Y KLHG+ D KFASRL Sbjct: 298 NHISAASTTAGNLPLIDPAAGNVCFASGTAGWSFTLQSFSKMYAKLHGVAMDVDKFASRL 357 Query: 754 *GDIYYHPDTR 722 GD+YYHPDTR Sbjct: 358 WGDVYYHPDTR 368 >ref|XP_004139267.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Cucumis sativus] gi|449493675|ref|XP_004159406.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Cucumis sativus] Length = 988 Score = 160 bits (404), Expect(3) = 1e-94 Identities = 77/86 (89%), Positives = 81/86 (94%) Frame = -3 Query: 258 FQWGAREGPLCDKPIRNVKFKIVDAKIAQEPLHRGTSQIIPTARRVAYSAFLMAMPRLME 79 FQWGAREGPLCD+PIRNVKFKIVDA+IA EPLHRG+ QIIPTARRVAYS+FLMA PRLME Sbjct: 785 FQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSSFLMATPRLME 844 Query: 78 PVYYVEIQTPIDCVFAIYTVLSRCRG 1 PVYYVEIQTPIDCV AIYTVLSR RG Sbjct: 845 PVYYVEIQTPIDCVSAIYTVLSRRRG 870 Score = 131 bits (330), Expect(3) = 1e-94 Identities = 66/76 (86%), Positives = 69/76 (90%) Frame = -1 Query: 725 QGVDASIMKTATLCNVNYDEDIYILMPLLFNTLPVVKMATEPLNPSELPKMVEGLRKISK 546 +GVDASIMKTATL NV+YDED+YI PL FNTLPVVK ATEPLNPSELPKMVEGLRKISK Sbjct: 568 EGVDASIMKTATLSNVDYDEDVYIFRPLQFNTLPVVKTATEPLNPSELPKMVEGLRKISK 627 Query: 545 S*PLATTKVEESGEHT 498 S PLA TKVEESGEHT Sbjct: 628 SYPLAITKVEESGEHT 643 Score = 103 bits (258), Expect(3) = 1e-94 Identities = 54/89 (60%), Positives = 65/89 (73%), Gaps = 10/89 (11%) Frame = -2 Query: 490 VADLVVSFCETVVESSYIHEMFC*NTQQR----------EQNHYEDIENGIVSIDWNRKT 341 VAD VVSFCETVVESS + + F ++ E+ EDIENG+VS+DW+RK Sbjct: 670 VADPVVSFCETVVESSSM-KCFAETPNKKNKITMIAEPLERGLAEDIENGVVSLDWSRKK 728 Query: 340 IGEFFQTKYDWDLLAARSIWAFGPDKQVP 254 +G+FFQTKY+WDLLAARSIWAFGPDKQ P Sbjct: 729 LGDFFQTKYEWDLLAARSIWAFGPDKQGP 757 Score = 117 bits (292), Expect = 6e-24 Identities = 55/72 (76%), Positives = 60/72 (83%) Frame = -2 Query: 934 DHISAASATVGGIEAIHPVAGNVNFASANVGWSFTLHSFAKLYVKLHGIPFDAAKFASRL 755 +HISAAS+T G ++ I P AGNV FASA GWSFTL SFAKLYVKLHGIPFDA KFA+RL Sbjct: 299 NHISAASSTAGNVQVIDPAAGNVCFASATAGWSFTLQSFAKLYVKLHGIPFDADKFATRL 358 Query: 754 *GDIYYHPDTRG 719 GD YYHPDTRG Sbjct: 359 WGDYYYHPDTRG 370