BLASTX nr result
ID: Coptis24_contig00007393
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00007393 (601 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI16624.3| unnamed protein product [Vitis vinifera] 223 2e-56 ref|XP_002274231.1| PREDICTED: uncharacterized protein LOC100265... 223 2e-56 ref|XP_002327002.1| predicted protein [Populus trichocarpa] gi|2... 221 1e-55 ref|XP_003622549.1| Nuclear pore glycoprotein [Medicago truncatu... 217 1e-54 ref|XP_002511630.1| structural constituent of nuclear pore, puta... 217 1e-54 >emb|CBI16624.3| unnamed protein product [Vitis vinifera] Length = 808 Score = 223 bits (569), Expect = 2e-56 Identities = 123/187 (65%), Positives = 132/187 (70%) Frame = +3 Query: 39 QPQTTTASPVFSVPXXXXXXXXXXXXXKISFPGPNXXXXXXXXXXXXXXXXXXXXXXXXX 218 Q QTTTASP+F VP + Sbjct: 547 QAQTTTASPLFGVPPSTAVAVTSSSTTAVQTSSS-----------LVVASSSGTNSTVTT 595 Query: 219 XXXPAPKLPSEITGKTVEEIIKEWNSELQERTGKFRKQAIAIADWDKRILQNRDVLLRLE 398 PAPK+PSEITGKTVEEIIKEWN+ELQERTGKFRKQA AIA+WDK+ILQNRDVLLRLE Sbjct: 596 AVAPAPKMPSEITGKTVEEIIKEWNTELQERTGKFRKQATAIAEWDKKILQNRDVLLRLE 655 Query: 399 IEVANVVETQATLERQLELIETHQQEVDKALQSIEEEAERVYNDERGLLLEDDAASTRDA 578 IEVA VVETQA LERQLELIETHQQEVDKAL SIEEEAER+Y DERGLLL+D+AASTRDA Sbjct: 656 IEVAKVVETQAQLERQLELIETHQQEVDKALLSIEEEAERIYKDERGLLLDDEAASTRDA 715 Query: 579 MYEQAEF 599 MYEQAEF Sbjct: 716 MYEQAEF 722 >ref|XP_002274231.1| PREDICTED: uncharacterized protein LOC100265039 [Vitis vinifera] Length = 775 Score = 223 bits (569), Expect = 2e-56 Identities = 123/187 (65%), Positives = 132/187 (70%) Frame = +3 Query: 39 QPQTTTASPVFSVPXXXXXXXXXXXXXKISFPGPNXXXXXXXXXXXXXXXXXXXXXXXXX 218 Q QTTTASP+F VP + Sbjct: 514 QAQTTTASPLFGVPPSTAVAVTSSSTTAVQTSSS-----------LVVASSSGTNSTVTT 562 Query: 219 XXXPAPKLPSEITGKTVEEIIKEWNSELQERTGKFRKQAIAIADWDKRILQNRDVLLRLE 398 PAPK+PSEITGKTVEEIIKEWN+ELQERTGKFRKQA AIA+WDK+ILQNRDVLLRLE Sbjct: 563 AVAPAPKMPSEITGKTVEEIIKEWNTELQERTGKFRKQATAIAEWDKKILQNRDVLLRLE 622 Query: 399 IEVANVVETQATLERQLELIETHQQEVDKALQSIEEEAERVYNDERGLLLEDDAASTRDA 578 IEVA VVETQA LERQLELIETHQQEVDKAL SIEEEAER+Y DERGLLL+D+AASTRDA Sbjct: 623 IEVAKVVETQAQLERQLELIETHQQEVDKALLSIEEEAERIYKDERGLLLDDEAASTRDA 682 Query: 579 MYEQAEF 599 MYEQAEF Sbjct: 683 MYEQAEF 689 >ref|XP_002327002.1| predicted protein [Populus trichocarpa] gi|222835317|gb|EEE73752.1| predicted protein [Populus trichocarpa] Length = 241 Score = 221 bits (562), Expect = 1e-55 Identities = 112/122 (91%), Positives = 117/122 (95%) Frame = +3 Query: 234 PKLPSEITGKTVEEIIKEWNSELQERTGKFRKQAIAIADWDKRILQNRDVLLRLEIEVAN 413 PKLPSEITGKTVEEIIKEWNSELQERTGKFRKQA AIA+WDKRILQNRDVLLRLEIEVA Sbjct: 37 PKLPSEITGKTVEEIIKEWNSELQERTGKFRKQATAIAEWDKRILQNRDVLLRLEIEVAK 96 Query: 414 VVETQATLERQLELIETHQQEVDKALQSIEEEAERVYNDERGLLLEDDAASTRDAMYEQA 593 VVETQA LER+LELIETHQQEVDKALQSIEEEAER+Y DERG LL+D+AASTRDAMYEQA Sbjct: 97 VVETQANLERKLELIETHQQEVDKALQSIEEEAERIYKDERGSLLDDEAASTRDAMYEQA 156 Query: 594 EF 599 EF Sbjct: 157 EF 158 >ref|XP_003622549.1| Nuclear pore glycoprotein [Medicago truncatula] gi|355497564|gb|AES78767.1| Nuclear pore glycoprotein [Medicago truncatula] Length = 299 Score = 217 bits (552), Expect = 1e-54 Identities = 108/121 (89%), Positives = 118/121 (97%) Frame = +3 Query: 234 PKLPSEITGKTVEEIIKEWNSELQERTGKFRKQAIAIADWDKRILQNRDVLLRLEIEVAN 413 PKLPSEITGKTVEEIIKEWN+ELQERTGKFRKQA AIA+WD+RILQNRDVLLRLEIEVA Sbjct: 92 PKLPSEITGKTVEEIIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDVLLRLEIEVAK 151 Query: 414 VVETQATLERQLELIETHQQEVDKALQSIEEEAERVYNDERGLLLEDDAASTRDAMYEQA 593 VVETQ++LERQLELIETHQQEVDKALQS+EEEAER+Y DERGLLL+D+AASTRDAMYEQ+ Sbjct: 152 VVETQSSLERQLELIETHQQEVDKALQSVEEEAERIYKDERGLLLDDEAASTRDAMYEQS 211 Query: 594 E 596 E Sbjct: 212 E 212 >ref|XP_002511630.1| structural constituent of nuclear pore, putative [Ricinus communis] gi|223548810|gb|EEF50299.1| structural constituent of nuclear pore, putative [Ricinus communis] Length = 811 Score = 217 bits (552), Expect = 1e-54 Identities = 109/121 (90%), Positives = 116/121 (95%) Frame = +3 Query: 234 PKLPSEITGKTVEEIIKEWNSELQERTGKFRKQAIAIADWDKRILQNRDVLLRLEIEVAN 413 PKLPSEITGKTVEEIIKEWN+ELQERTGKFRKQA AIA+WDKRIL NRDVLLRLEIEVA Sbjct: 604 PKLPSEITGKTVEEIIKEWNAELQERTGKFRKQAAAIAEWDKRILHNRDVLLRLEIEVAK 663 Query: 414 VVETQATLERQLELIETHQQEVDKALQSIEEEAERVYNDERGLLLEDDAASTRDAMYEQA 593 VVETQA LERQLELIETHQQEVDKA+QS+EEEAER+Y DERGLLL+D+AASTRDAMYEQA Sbjct: 664 VVETQANLERQLELIETHQQEVDKAVQSMEEEAERIYKDERGLLLDDEAASTRDAMYEQA 723 Query: 594 E 596 E Sbjct: 724 E 724