BLASTX nr result

ID: Coptis24_contig00007389 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00007389
         (1216 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002510612.1| conserved hypothetical protein [Ricinus comm...   162   2e-37
emb|CAN74180.1| hypothetical protein VITISV_034258 [Vitis vinifera]   150   6e-34
emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]   145   2e-32
ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis ...   145   2e-32
emb|CAN67605.1| hypothetical protein VITISV_030993 [Vitis vinifera]   143   8e-32

>ref|XP_002510612.1| conserved hypothetical protein [Ricinus communis]
            gi|223551313|gb|EEF52799.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 402

 Score =  162 bits (410), Expect = 2e-37
 Identities = 115/370 (31%), Positives = 176/370 (47%), Gaps = 23/370 (6%)
 Frame = +2

Query: 176  WLELPSHLTFVIAEKLFYNVKDLIQFGAVCMYWQSVFIEIRKDXXXXXXXXXXXXXXTEF 355
            W ELP  L  VIA+K   N  D +   AVC  WQS    I K                 +
Sbjct: 5    WAELPPELLQVIADK-HTNYVDYLVTRAVCGSWQSA---IAKRPHNHLLCQLPFLLLPYY 60

Query: 356  NSDDQTRSCYSLTEDRVSNFQFRVPHDWHCQSSSHGWLVIVRNNLDVFLFNPFLSVNNEI 535
             ++   R  Y++++D++   +    ++  C  SSHGWL++V ++  +FL NP       I
Sbjct: 61   QNNPDRRGFYNISDDKIYVLELPEAYEKRCCGSSHGWLIMVEDSPSIFLLNPL--TRERI 118

Query: 536  QLPPITAFTRDPRELVFHND------------------YITKAVLSANPILNPNYVVMVI 661
            +LP ++ F+  P ++VF N                   +I KA+LS++P L+ N++ +VI
Sbjct: 119  ELPALSTFSIFPTDVVFENSRNLNENFIMREKFHIRDTFIVKAILSSDPSLDTNFMAVVI 178

Query: 662  HGGCRLLAFWRPGDKAWTSLDSKYTV---VMDIIYFKEQFYVVTHFGEVLAFDLNHPYPK 832
            +G    LAF R GD AWT +D   +      D ++   + + V   G +    L      
Sbjct: 179  YGVNENLAFCRSGDAAWTVIDETTSPPRRYKDALFRAGKLFAVDQTGGISI--LTEENTM 236

Query: 833  VSVISPKPTDYSLTCQSKYLV-VSSGDLLQVSRRRTGTGGYFY-TRRFELFKLDTTQTEW 1006
            +    P         +  YL   S  +LL V R R     Y Y T RFE++KLD     W
Sbjct: 237  IRFADPPLVSSRTGYKQWYLASYSEEELLIVCRYRKVVPDYEYKTERFEIYKLD--DGGW 294

Query: 1007 VEVKSLGGRILLLGDNTSLSLSASEFPKCKSNSIYFTDDFHEAYSSRVYQMESDGPVPHD 1186
             + +SLG ++L LG N SLS+SA ++ KCK N IYFTDD+       V++        HD
Sbjct: 295  KKKESLGDKMLFLGGNGSLSISALDYSKCKGNCIYFTDDYIRLCKDYVWE-------GHD 347

Query: 1187 IGVFNLEDGS 1216
             G++++EDG+
Sbjct: 348  YGIYDIEDGN 357


>emb|CAN74180.1| hypothetical protein VITISV_034258 [Vitis vinifera]
          Length = 394

 Score =  150 bits (379), Expect = 6e-34
 Identities = 114/378 (30%), Positives = 172/378 (45%), Gaps = 34/378 (8%)
 Frame = +2

Query: 176  WLELPSHLTFVIAEKLFYNVKDLIQFGAVCMYWQSVFIEIRKDXXXXXXXXXXXXXXTEF 355
            W +LP  L  +I ++L  +  D+I+FG VC +W  V +E R+                  
Sbjct: 6    WSKLPKELIELIFDEL-QHAGDIIRFGTVCRFWGLVALEARQQVFKPLRPLSPMLLLPP- 63

Query: 356  NSDDQTRSCYSLTEDRVSNFQFRVPHDWHCQSSSHGWLVIVRNNL--DVFLFNPFLSVNN 529
            N DD     Y   + +    Q     D  C +S +GWL+ + +    ++   NP   V  
Sbjct: 64   NKDDGAHKLYDFFKKKAYKIQIPAMRDKWCCNSWNGWLITINHTFPYEICCLNPISGV-- 121

Query: 530  EIQLPPITAFTRDPREL--VFHNDYITKAVLSANPI-LNPNYVVMVIHGGCRLLAFWRPG 700
            +I LPP   F   P +L       ++ K VLS+ P   N N V+M IH     LAF +PG
Sbjct: 122  QIDLPPAITFEDSPPDLDETPIEFFLNKVVLSSTPSPSNANCVIMAIHSNYNKLAFCKPG 181

Query: 701  DKAWTSLDSKYTVVMDIIYFKEQFYVVTHFGEVLAFDLNHPYPKVS--VISPKPTDYSLT 874
            DK W +L S+     D++Y+K+ FY +    +V+  D+    P+V    + PK   +   
Sbjct: 182  DKRWITLKSEDIQYKDLLYYKDNFYAIGR-SKVVQCDIGDD-PRVIPFALLPKMGYF--- 236

Query: 875  CQSKYLVVSSGDLLQVSRR------------RTGTGGY---------------FYTRRFE 973
             Q +YLV SSG LL V R             R  T G+               + T  F+
Sbjct: 237  -QYRYLVESSGCLLYVLRYMDLKDNEDPLKLRYETTGFKVFDLDSDKRKFSYRYETTTFK 295

Query: 974  LFKLDTTQTEWVEVKSLGGRILLLGDNTSLSLSASEFPKCKSNSIYFTDDFHEAYSSRVY 1153
            ++  D  Q +W  +K++  + LLLG N ++S+S  +F   KSN IYF DD+ E Y    Y
Sbjct: 296  VYNFDFDQKKWKLIKNIKEKALLLGHNQAISISTKKFDGFKSNHIYFLDDYKEGYFENTY 355

Query: 1154 QMESDGPVPHDIGVFNLE 1207
                     HD+GVFN++
Sbjct: 356  GC-------HDMGVFNIK 366


>emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]
          Length = 389

 Score =  145 bits (367), Expect = 2e-32
 Identities = 111/381 (29%), Positives = 174/381 (45%), Gaps = 34/381 (8%)
 Frame = +2

Query: 176  WLELPSHLTFVIAEKLFYNVKDLIQFGAVCMYWQSVFIEIRKDXXXXXXXXXXXXXXTEF 355
            W +L   L   IA+K F    D ++F AVC  W++   +                   + 
Sbjct: 4    WSQLHPELLDFIAKK-FKIYTDYVRFRAVCHNWRASVPKT----PHHLPTQLPWLMLPQS 58

Query: 356  NSDDQTRSCYSLTEDRVSNFQF-RVPHDWHCQSSSHGWLVIVRNNLDVFLFNPFLSVNNE 532
                  R  +SL+ ++    Q     H    + SSHGWL+I+    ++FL NP     ++
Sbjct: 59   QPHHTHRPFFSLSLNKFHFLQLPEASHRRRRRGSSHGWLLILDEAPEIFLLNPL--TRSK 116

Query: 533  IQLPPITAF-------------------------TRDPRELVFHNDYITKAVLSANPILN 637
            + LPP++ F                         TR  +++   + +I K +LS++P   
Sbjct: 117  VHLPPLSTFPNVVRFNFADVGREYALRTSSGDVYTRSLKKM--RDSFIKKTILSSSPANG 174

Query: 638  PNYVVMVIHGGCRLLAFWRPGDKAWTSLDSKYTVVMDIIYFKEQFYVVTHFGEVLAFDLN 817
             +++ +VI      LA  R  D +WT L+   +   D+I+ +  FY V  +G +   D++
Sbjct: 175  SDFIAVVILNQTGDLALCRKSDDSWTFLEDAQSYSEDVIFHRGLFYAVNKYGSIAVCDVS 234

Query: 818  HPYPKVSVISPKPTDYSLTCQSKYLVVSSGDLLQVSR--------RRTGTGGYFYTRRFE 973
               P+VS+I   P  +    Q  YLV S  +LL V+R            T   + T RF+
Sbjct: 235  GSSPRVSIIE-MPQQFGGDLQ--YLVESGEELLLVTRYLDLTYDVEXDQTSLIYRTTRFQ 291

Query: 974  LFKLDTTQTEWVEVKSLGGRILLLGDNTSLSLSASEFPKCKSNSIYFTDDFHEAYSSRVY 1153
            + +LD+    W  V SLG R L LG+N SLSLS+ +FP CK N IY+TDD+ E     + 
Sbjct: 292  VCRLDSKAPRWEVVSSLGDRALFLGENLSLSLSSVDFPGCKGNCIYYTDDYSEDNYDGIG 351

Query: 1154 QMESDGPVPHDIGVFNLEDGS 1216
              +       D+G+FNLEDGS
Sbjct: 352  GEQ-------DLGIFNLEDGS 365


>ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
          Length = 389

 Score =  145 bits (366), Expect = 2e-32
 Identities = 111/381 (29%), Positives = 173/381 (45%), Gaps = 34/381 (8%)
 Frame = +2

Query: 176  WLELPSHLTFVIAEKLFYNVKDLIQFGAVCMYWQSVFIEIRKDXXXXXXXXXXXXXXTEF 355
            W +L   L   IA+K F    D ++F AVC  W++   +                   + 
Sbjct: 4    WSQLHPELLDFIAKK-FKIYTDYVRFRAVCHNWRASVPKT----PHHLPTQLPWLMLPQS 58

Query: 356  NSDDQTRSCYSLTEDRVSNFQF-RVPHDWHCQSSSHGWLVIVRNNLDVFLFNPFLSVNNE 532
                  R  +SL+ ++    Q     H    + SSHGWL+I+    ++FL NP     ++
Sbjct: 59   QPHHTHRPFFSLSLNKFHFLQLPEASHRRRRRGSSHGWLLILDEAPEIFLLNPL--TRSK 116

Query: 533  IQLPPITAF-------------------------TRDPRELVFHNDYITKAVLSANPILN 637
            + LPP++ F                         TR  +++   + +I K +LS++P   
Sbjct: 117  VHLPPLSTFPNVVRFNFADVGREYALRTSSGDVYTRSLKKM--RDSFIKKTILSSSPANG 174

Query: 638  PNYVVMVIHGGCRLLAFWRPGDKAWTSLDSKYTVVMDIIYFKEQFYVVTHFGEVLAFDLN 817
             +++ +VI      LA  R  D +WT L+   +   D+I+ +  FY V  +G +   D++
Sbjct: 175  SDFIAVVILNQTGDLALCRKSDDSWTFLEDAQSYAEDVIFHRGLFYAVNKYGSIAVCDVS 234

Query: 818  HPYPKVSVISPKPTDYSLTCQSKYLVVSSGDLLQVSR--------RRTGTGGYFYTRRFE 973
               P+VS+I   P  +    Q  YLV S  +LL V+R            T   + T RF+
Sbjct: 235  GSSPRVSIIE-MPQQFGGDLQ--YLVESGEELLLVTRYLDLTYDVEPDQTSLIYRTTRFQ 291

Query: 974  LFKLDTTQTEWVEVKSLGGRILLLGDNTSLSLSASEFPKCKSNSIYFTDDFHEAYSSRVY 1153
            + +LD     W  V SLG R L LG+N SLSLS+ +FP CK N IY+TDD+ E     + 
Sbjct: 292  VCRLDLKAPRWEVVSSLGDRALFLGENLSLSLSSVDFPGCKGNCIYYTDDYSEDNYDGIG 351

Query: 1154 QMESDGPVPHDIGVFNLEDGS 1216
              +       D+G+FNLEDGS
Sbjct: 352  GEQ-------DLGIFNLEDGS 365


>emb|CAN67605.1| hypothetical protein VITISV_030993 [Vitis vinifera]
          Length = 1290

 Score =  143 bits (361), Expect = 8e-32
 Identities = 110/337 (32%), Positives = 162/337 (48%), Gaps = 20/337 (5%)
 Frame = +2

Query: 176  WLELPSHLTFVIAEKLFYNVKDLIQFGAVCMYWQSVFIEIRKDXXXXXXXXXXXXXXTEF 355
            W ++P     +IAEKL ++V+D ++FG VC  W S+F    +D                 
Sbjct: 922  WSKMPDDPLKLIAEKL-HSVEDYVRFGGVCKSWYSIF----EDKECCCPSSKSPWLMLAE 976

Query: 356  NSDDQTRSCYSLTEDRVSNFQFRVPH---DWHCQSSSHGWLVIVRNNLDVFLFNPFLSVN 526
              + + R  YS    +V  ++ R+P     W C  S +GWLV +  +LD+ L NP   V 
Sbjct: 977  KENSEIRGFYSPLSGKV--YEIRLPEVVGKW-CWGSPYGWLVTIGTDLDMCLLNPLTRV- 1032

Query: 527  NEIQLPPITAF----------TRDPRELVFHNDYITKAVLSANPILNPNYVVMVIHGGCR 676
             +I LP + A           T+  R     + +I KAVLS+ P  +P+  VM+I+    
Sbjct: 1033 -QILLPSLRACPNLNTLIDSSTQGSRS---KDIFIYKAVLSSAPS-SPDCAVMIIYSDYG 1087

Query: 677  LLAFWRPGDKAWTSLDSKYTVVMDIIYFKEQFYVVTHFGEVLAFDLNHPYPKVSVISPKP 856
             LAF +PG + WT L+S+   V DIIYF   F  V    EV   D++    K    +  P
Sbjct: 1088 RLAFTKPGHQTWTLLESESGPVDDIIYFNGSFLAVNLSWEVWICDISGSQLKTIRFAAAP 1147

Query: 857  TDYS---LTCQSKYLVVSSGDLLQVSRRRTGTGG----YFYTRRFELFKLDTTQTEWVEV 1015
                   +  ++KYLV S G++  V+R    T      Y  T  F + KLD     W EV
Sbjct: 1148 ALQDVDEIEYEAKYLVESGGEIYMVTRNLYDTARRDIPYMRTWTFSVLKLDMCNKRWEEV 1207

Query: 1016 KSLGGRILLLGDNTSLSLSASEFPKCKSNSIYFTDDF 1126
            ++L      LG+N S S  AS++P+ + NSIYFTDD+
Sbjct: 1208 ENLDHCSFFLGNNHSFSTWASDYPEFRKNSIYFTDDY 1244


Top