BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00007357
         (873 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002314694.1| predicted protein [Populus trichocarpa] gi|2...   348   9e-94
emb|CBI26264.3| unnamed protein product [Vitis vinifera]              343   3e-92
ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containi...   343   3e-92
ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containi...   326   5e-87
ref|XP_003617141.1| Pentatricopeptide repeat-containing protein ...   324   2e-86

>ref|XP_002314694.1| predicted protein [Populus trichocarpa] gi|222863734|gb|EEF00865.1|
            predicted protein [Populus trichocarpa]
          Length = 631

 Score =  348 bits (893), Expect = 9e-94
 Identities = 165/206 (80%), Positives = 181/206 (87%)
 Frame = +3

Query: 3    PTVSVWGALLGACRVYGRPELGKIAADKLFELDPQDSGNHVLLSNMFAAAGRWNEATDVR 182
            PT+SVWGALL ACRVYG PELGKIAAD LF+LDP+DSGNHVLLSNMFAAAGRW+EAT VR
Sbjct: 426  PTISVWGALLNACRVYGEPELGKIAADNLFKLDPKDSGNHVLLSNMFAAAGRWDEATLVR 485

Query: 183  TEMKDVGIKKGPGCSWITVKNDVHVFQAKDTSHERNSEIQAMLAKLRRDMKAAGYIPHTN 362
             EMKDVGIKKG GCSW+T KN VHVFQAKDTSHERNSEIQAML KLR +M+AAGY+P TN
Sbjct: 486  KEMKDVGIKKGAGCSWVTAKNKVHVFQAKDTSHERNSEIQAMLVKLRTEMQAAGYMPDTN 545

Query: 363  FALYDLXXXXXXXXVWYHSEKLALAFGLISIPPGVPIRITKNLRVCIDCHSALKFISSIV 542
            +ALYDL        V YHSEK+ALAFGLI++PPGVPIRITKNLR+C DCHSA KFIS IV
Sbjct: 546  YALYDLEEEEKMTEVGYHSEKIALAFGLIALPPGVPIRITKNLRICGDCHSAFKFISGIV 605

Query: 543  NREIIVRDNNRFHRFKDNLCSCRDYW 620
             REIIVRDNNRFHRF+D+ CSCRD+W
Sbjct: 606  GREIIVRDNNRFHRFRDSQCSCRDFW 631


>emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  343 bits (880), Expect = 3e-92
 Identities = 166/206 (80%), Positives = 179/206 (86%)
 Frame = +3

Query: 3   PTVSVWGALLGACRVYGRPELGKIAADKLFELDPQDSGNHVLLSNMFAAAGRWNEATDVR 182
           PTVSVWGALLGA +++G+ ELGK+AAD LFELDP DSGNHVLLSNMFAAAGRW EAT VR
Sbjct: 378 PTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVR 437

Query: 183 TEMKDVGIKKGPGCSWITVKNDVHVFQAKDTSHERNSEIQAMLAKLRRDMKAAGYIPHTN 362
            EMKDVGIKKG GCSWIT  N VHVFQAKDTSHERNSEIQAMLAKLR +M+AAGYIP T+
Sbjct: 438 KEMKDVGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTS 497

Query: 363 FALYDLXXXXXXXXVWYHSEKLALAFGLISIPPGVPIRITKNLRVCIDCHSALKFISSIV 542
           FAL+DL        VWYHSEK+ALAFGLISIP GVPIRITKNLR+C DCHSA+KFIS IV
Sbjct: 498 FALFDLEEEEKAMEVWYHSEKIALAFGLISIPAGVPIRITKNLRICGDCHSAIKFISGIV 557

Query: 543 NREIIVRDNNRFHRFKDNLCSCRDYW 620
            REIIVRDNN FHRF+DN CSCRDYW
Sbjct: 558 GREIIVRDNNLFHRFRDNQCSCRDYW 583


>ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14850-like
            [Vitis vinifera]
          Length = 684

 Score =  343 bits (880), Expect = 3e-92
 Identities = 166/206 (80%), Positives = 179/206 (86%)
 Frame = +3

Query: 3    PTVSVWGALLGACRVYGRPELGKIAADKLFELDPQDSGNHVLLSNMFAAAGRWNEATDVR 182
            PTVSVWGALLGA +++G+ ELGK+AAD LFELDP DSGNHVLLSNMFAAAGRW EAT VR
Sbjct: 479  PTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVR 538

Query: 183  TEMKDVGIKKGPGCSWITVKNDVHVFQAKDTSHERNSEIQAMLAKLRRDMKAAGYIPHTN 362
             EMKDVGIKKG GCSWIT  N VHVFQAKDTSHERNSEIQAMLAKLR +M+AAGYIP T+
Sbjct: 539  KEMKDVGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTS 598

Query: 363  FALYDLXXXXXXXXVWYHSEKLALAFGLISIPPGVPIRITKNLRVCIDCHSALKFISSIV 542
            FAL+DL        VWYHSEK+ALAFGLISIP GVPIRITKNLR+C DCHSA+KFIS IV
Sbjct: 599  FALFDLEEEEKAMEVWYHSEKIALAFGLISIPAGVPIRITKNLRICGDCHSAIKFISGIV 658

Query: 543  NREIIVRDNNRFHRFKDNLCSCRDYW 620
             REIIVRDNN FHRF+DN CSCRDYW
Sbjct: 659  GREIIVRDNNLFHRFRDNQCSCRDYW 684


>ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14850-like
            [Glycine max]
          Length = 686

 Score =  326 bits (835), Expect = 5e-87
 Identities = 151/206 (73%), Positives = 175/206 (84%)
 Frame = +3

Query: 3    PTVSVWGALLGACRVYGRPELGKIAADKLFELDPQDSGNHVLLSNMFAAAGRWNEATDVR 182
            PT+SVWGALLGAC+++G+ +LGKIAA+KLFELDP DSGNHV+ SNM A+AGRW EAT VR
Sbjct: 481  PTISVWGALLGACKMHGKTKLGKIAAEKLFELDPDDSGNHVVFSNMLASAGRWEEATIVR 540

Query: 183  TEMKDVGIKKGPGCSWITVKNDVHVFQAKDTSHERNSEIQAMLAKLRRDMKAAGYIPHTN 362
             EM+D+GIKK  G SW+ VKN VHVFQAKD+ HE+NSEIQAMLAKLR +MK AGY+P  N
Sbjct: 541  KEMRDIGIKKNVGYSWVAVKNRVHVFQAKDSFHEKNSEIQAMLAKLRGEMKKAGYVPDAN 600

Query: 363  FALYDLXXXXXXXXVWYHSEKLALAFGLISIPPGVPIRITKNLRVCIDCHSALKFISSIV 542
             +L+DL        VWYHSEK+ALAFGLI++P GVPIRITKNLR+CIDCHSA+KFIS IV
Sbjct: 601  LSLFDLEEEEKASEVWYHSEKIALAFGLITLPRGVPIRITKNLRICIDCHSAIKFISKIV 660

Query: 543  NREIIVRDNNRFHRFKDNLCSCRDYW 620
             REIIVRDNNRFHRFKD  CSC+DYW
Sbjct: 661  GREIIVRDNNRFHRFKDGWCSCKDYW 686


>ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355518476|gb|AET00100.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  324 bits (830), Expect = 2e-86
 Identities = 153/206 (74%), Positives = 174/206 (84%)
 Frame = +3

Query: 3    PTVSVWGALLGACRVYGRPELGKIAADKLFELDPQDSGNHVLLSNMFAAAGRWNEATDVR 182
            PT+SVWGALLGACR++G+ ELGKIAA+KLFELD  DSGNHV+LSNM A+AGRW EAT VR
Sbjct: 479  PTISVWGALLGACRMHGKTELGKIAAEKLFELDHVDSGNHVVLSNMLASAGRWEEATVVR 538

Query: 183  TEMKDVGIKKGPGCSWITVKNDVHVFQAKDTSHERNSEIQAMLAKLRRDMKAAGYIPHTN 362
             EMKD+GIKK  G SWI VKN +HVFQAKD+SH+RNSEIQAML KLR  MK AGY+P TN
Sbjct: 539  KEMKDIGIKKNVGYSWIAVKNRIHVFQAKDSSHDRNSEIQAMLGKLRGGMKEAGYVPDTN 598

Query: 363  FALYDLXXXXXXXXVWYHSEKLALAFGLISIPPGVPIRITKNLRVCIDCHSALKFISSIV 542
             +L+DL        VWYHSEK+ALAFGLI++P GVPIRITKNLR+C DCHSA+KFIS IV
Sbjct: 599  LSLFDLEDEEKASEVWYHSEKIALAFGLIALPQGVPIRITKNLRICGDCHSAIKFISRIV 658

Query: 543  NREIIVRDNNRFHRFKDNLCSCRDYW 620
             REIIVRDN+RFHRFKD  CSC+DYW
Sbjct: 659  GREIIVRDNHRFHRFKDGCCSCKDYW 684