BLASTX nr result

ID: Coptis24_contig00007356 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00007356
         (2198 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003530707.1| PREDICTED: pre-mRNA-splicing factor CWC22 ho...   903   0.0  
ref|XP_004142129.1| PREDICTED: pre-mRNA-splicing factor CWC22 ho...   897   0.0  
ref|XP_003541530.1| PREDICTED: pre-mRNA-splicing factor CWC22 ho...   897   0.0  
ref|XP_004162101.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-spl...   894   0.0  
ref|XP_002265479.1| PREDICTED: pre-mRNA-splicing factor CWC22 ho...   893   0.0  

>ref|XP_003530707.1| PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Glycine max]
          Length = 871

 Score =  903 bits (2334), Expect = 0.0
 Identities = 455/536 (84%), Positives = 480/536 (89%)
 Frame = +1

Query: 283  NDSVAKAGKTGGAYIPPFKLAQMMKGVEDKSSIEYQRLTWDALRKSINGLVNKVNAANIK 462
            N   +  GK+GG YIPPFK+A MMK V+DKSS+EYQRLTWDALRKSINGLVNKVNA NIK
Sbjct: 291  NGDASNLGKSGGVYIPPFKMAMMMKEVQDKSSVEYQRLTWDALRKSINGLVNKVNATNIK 350

Query: 463  NIVPELFEENMIRGRGLFCRSCMKSQMASSRFTDVFSALVAVVNTKFPEVGELLLRRIVL 642
            NI+PELF EN+IRGRGLFCRSCMKSQMAS  FTDVF+ALVAVVNTKFPEVG+LLLRRIVL
Sbjct: 351  NIIPELFAENLIRGRGLFCRSCMKSQMASPGFTDVFAALVAVVNTKFPEVGDLLLRRIVL 410

Query: 643  QLKRAYKRNDKPQLLAAVKFIAHLVNQQVAHEIIALELLTVLLENPSDDSVEVAVGFVTE 822
            QLKRAYKRNDKPQLLAAVKFIAHLVNQQ AHEIIALELLTVLLE P+DDSVEVAVGFVTE
Sbjct: 411  QLKRAYKRNDKPQLLAAVKFIAHLVNQQAAHEIIALELLTVLLEKPTDDSVEVAVGFVTE 470

Query: 823  CGSLLQDLSPKALHGIFERFRGILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPELDL 1002
            CGS+LQDLSPK LHGIFERFRGILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPELDL
Sbjct: 471  CGSILQDLSPKGLHGIFERFRGILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPELDL 530

Query: 1003 VDQEDQLTHELSLEDEIDPETSLDIFKADPLFLENEKRYEVLKKSILGXXXXXXXXXXXX 1182
            V+QEDQ+THE+SL++EIDPE SLDIFK DP FLENEKRYE LKKS+LG            
Sbjct: 531  VEQEDQITHEVSLDEEIDPEISLDIFKPDPNFLENEKRYEELKKSMLGEESEDDEEGLDS 590

Query: 1183 XXXXXXXXXXXXXXXXXXQMKIKDETETDLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLE 1362
                              QM+IKDETET+LVNLRRTIYLTIMSSVDFEEAGHKLLKIKLE
Sbjct: 591  ESDDDDDEDDESDEEEEEQMQIKDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLE 650

Query: 1363 PGQEMELCIMLLECCSQERTYLRYYGLLGQRFCNINKIHQENFETCFVKQYSSIHQLETN 1542
            PGQEMELCIMLLECCSQERTYLRYYGLLGQRFC INK+HQENFE CFV+QYS IH+LETN
Sbjct: 651  PGQEMELCIMLLECCSQERTYLRYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETN 710

Query: 1543 KLRNVAKFFAHLLGTDALPWHVLSYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNER 1722
            KLRNV KFFAHLLGTDALPWHVLSYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNER
Sbjct: 711  KLRNVGKFFAHLLGTDALPWHVLSYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNER 770

Query: 1723 LTDPQMQESFDSIFPKDNPKNTRFSINFFTSIGLGGITENLREYLKNMPRLIMQQK 1890
            L DP MQESF+SIFPKDNPKNTRF INFFTSIGLGG+TENLREYLKNMPRLIMQQ+
Sbjct: 771  LNDPTMQESFESIFPKDNPKNTRFCINFFTSIGLGGLTENLREYLKNMPRLIMQQQ 826


>ref|XP_004142129.1| PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Cucumis sativus]
          Length = 797

 Score =  897 bits (2318), Expect = 0.0
 Identities = 453/538 (84%), Positives = 486/538 (90%), Gaps = 2/538 (0%)
 Frame = +1

Query: 283  NDSVAKAGKTGGAYIPPFKLAQMMKGVEDKSSIEYQRLTWDALRKSINGLVNKVNAANIK 462
            N   +  GK+GG YIPPFKLA+MMK V+DKSSIEYQRLTWDALRKSINGLVNKVNA NIK
Sbjct: 212  NPDSSNLGKSGGVYIPPFKLARMMKEVQDKSSIEYQRLTWDALRKSINGLVNKVNATNIK 271

Query: 463  NIVPELFEENMIRGRGLFCRSCMKSQMASSRFTDVFSALVAVVNTKFPEVGELLLRRIVL 642
            NI+PELF EN+IRGRGLFCRSCMKSQMAS  FTDVF+ALVAVVNTKFPEVG+LLLRRIVL
Sbjct: 272  NIIPELFAENLIRGRGLFCRSCMKSQMASPGFTDVFAALVAVVNTKFPEVGDLLLRRIVL 331

Query: 643  QLKRAYKRNDKPQLLAAVKFIAHLVNQQVAHEIIALELLTVLLENPSDDSVEVAVGFVTE 822
            QLKRAYKRNDKPQLLAAVKFIAHLVNQQVAHEIIALELLTVLLENP+DDSVEVAVGFVTE
Sbjct: 332  QLKRAYKRNDKPQLLAAVKFIAHLVNQQVAHEIIALELLTVLLENPTDDSVEVAVGFVTE 391

Query: 823  CGSLLQDLSPKALHGIFERFRGILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPELDL 1002
            CGS+L+DLSPK LHGIFERFRGILHEGEIDKRVQFLIEGLFAIRKAKF+GYPAVRPELDL
Sbjct: 392  CGSILKDLSPKGLHGIFERFRGILHEGEIDKRVQFLIEGLFAIRKAKFEGYPAVRPELDL 451

Query: 1003 VDQEDQLTHELSLEDEIDPETSLDIFKADPLFLENEKRYEVLKKSILG--XXXXXXXXXX 1176
            V+QEDQLTHE+SL++EIDPE +LDIFK+DP FLENEKRYE LKK+ILG            
Sbjct: 452  VEQEDQLTHEISLQEEIDPEITLDIFKSDPNFLENEKRYEDLKKNILGEESEDEEDRSDA 511

Query: 1177 XXXXXXXXXXXXXXXXXXXXQMKIKDETETDLVNLRRTIYLTIMSSVDFEEAGHKLLKIK 1356
                                QM+I DETET+LVNLRRTIYLTIMSSVDFEEAGHKLLKIK
Sbjct: 512  GSDESEDEDEEDESEEEDEEQMQINDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIK 571

Query: 1357 LEPGQEMELCIMLLECCSQERTYLRYYGLLGQRFCNINKIHQENFETCFVKQYSSIHQLE 1536
            LEPGQE+ELC+MLLECCSQERTYLRYYGLLGQRFC INK++QENF+ CFV+QYS IH+LE
Sbjct: 572  LEPGQEIELCVMLLECCSQERTYLRYYGLLGQRFCKINKVYQENFDKCFVQQYSMIHRLE 631

Query: 1537 TNKLRNVAKFFAHLLGTDALPWHVLSYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLN 1716
            TNKLRNVAKFFAHLLGTDALPWHVLSYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLN
Sbjct: 632  TNKLRNVAKFFAHLLGTDALPWHVLSYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLN 691

Query: 1717 ERLTDPQMQESFDSIFPKDNPKNTRFSINFFTSIGLGGITENLREYLKNMPRLIMQQK 1890
            ERLTDP MQ+SF+SIFP+DNPKNTRFSINFFTSIGLGG+TENLREYLKNMPRLIMQQ+
Sbjct: 692  ERLTDPTMQDSFESIFPRDNPKNTRFSINFFTSIGLGGLTENLREYLKNMPRLIMQQQ 749


>ref|XP_003541530.1| PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Glycine max]
          Length = 860

 Score =  897 bits (2318), Expect = 0.0
 Identities = 455/536 (84%), Positives = 481/536 (89%)
 Frame = +1

Query: 283  NDSVAKAGKTGGAYIPPFKLAQMMKGVEDKSSIEYQRLTWDALRKSINGLVNKVNAANIK 462
            N  V+  GK+GG YIPPFK+A MMK V+DKSS+EYQRLTWDALRKSINGLVNKVNA NIK
Sbjct: 275  NGDVSNLGKSGGVYIPPFKMAMMMKEVQDKSSVEYQRLTWDALRKSINGLVNKVNATNIK 334

Query: 463  NIVPELFEENMIRGRGLFCRSCMKSQMASSRFTDVFSALVAVVNTKFPEVGELLLRRIVL 642
            NI+PELF EN+IRGRGLFCRSCMKSQMAS  FTDVF+ALVAVVNTKFPEVG+LLLRRIVL
Sbjct: 335  NIIPELFAENLIRGRGLFCRSCMKSQMASPGFTDVFAALVAVVNTKFPEVGDLLLRRIVL 394

Query: 643  QLKRAYKRNDKPQLLAAVKFIAHLVNQQVAHEIIALELLTVLLENPSDDSVEVAVGFVTE 822
            QLKRAYKRNDKPQLLAAVKFIAHLVNQQ AHEIIALELLTVLLE P+DDSVEVAVGFVTE
Sbjct: 395  QLKRAYKRNDKPQLLAAVKFIAHLVNQQAAHEIIALELLTVLLEKPTDDSVEVAVGFVTE 454

Query: 823  CGSLLQDLSPKALHGIFERFRGILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPELDL 1002
            CGS+LQDLSPK LHGIFERFRGILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPELDL
Sbjct: 455  CGSILQDLSPKGLHGIFERFRGILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPELDL 514

Query: 1003 VDQEDQLTHELSLEDEIDPETSLDIFKADPLFLENEKRYEVLKKSILGXXXXXXXXXXXX 1182
            V+QEDQ+THE+SL++EIDPE SLDIFK DP FLENEKRYE LKKS+LG            
Sbjct: 515  VEQEDQITHEVSLDEEIDPEISLDIFKPDPNFLENEKRYEELKKSMLG-EESEDDEEGLD 573

Query: 1183 XXXXXXXXXXXXXXXXXXQMKIKDETETDLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLE 1362
                              +M+IKDETET+LVNLRRTIYLTIMSSVDFEEAGHKLLKIKLE
Sbjct: 574  AESDDDDEDDDSDEEDEEEMQIKDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLE 633

Query: 1363 PGQEMELCIMLLECCSQERTYLRYYGLLGQRFCNINKIHQENFETCFVKQYSSIHQLETN 1542
            PGQEMELCIMLLECCSQERTYLRYYGLLGQRFC INK+HQENFE CFV+QYS IH+LETN
Sbjct: 634  PGQEMELCIMLLECCSQERTYLRYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETN 693

Query: 1543 KLRNVAKFFAHLLGTDALPWHVLSYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNER 1722
            KLRNVAKFFAHLLGTDALPWHVLSYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNER
Sbjct: 694  KLRNVAKFFAHLLGTDALPWHVLSYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNER 753

Query: 1723 LTDPQMQESFDSIFPKDNPKNTRFSINFFTSIGLGGITENLREYLKNMPRLIMQQK 1890
            L D  MQESF+SIFPKDNPKNTRF INFFTSIGLGG+TENLREYLKNMPRLIMQQ+
Sbjct: 754  LNDLTMQESFESIFPKDNPKNTRFCINFFTSIGLGGLTENLREYLKNMPRLIMQQQ 809


>ref|XP_004162101.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC22
            homolog, partial [Cucumis sativus]
          Length = 780

 Score =  894 bits (2311), Expect = 0.0
 Identities = 452/538 (84%), Positives = 484/538 (89%), Gaps = 2/538 (0%)
 Frame = +1

Query: 283  NDSVAKAGKTGGAYIPPFKLAQMMKGVEDKSSIEYQRLTWDALRKSINGLVNKVNAANIK 462
            N   +  GK+GG YIPPFKLA+MMK V+DKSSIEYQRLTWDALRKSINGLVNKVNA NIK
Sbjct: 212  NPDSSNLGKSGGVYIPPFKLARMMKEVQDKSSIEYQRLTWDALRKSINGLVNKVNATNIK 271

Query: 463  NIVPELFEENMIRGRGLFCRSCMKSQMASSRFTDVFSALVAVVNTKFPEVGELLLRRIVL 642
            NI+PELF EN+IRGRGLFCRSCMKSQMAS  FTDVF+ALVAVVNTKFPEVG+LLLRRIVL
Sbjct: 272  NIIPELFAENLIRGRGLFCRSCMKSQMASPGFTDVFAALVAVVNTKFPEVGDLLLRRIVL 331

Query: 643  QLKRAYKRNDKPQLLAAVKFIAHLVNQQVAHEIIALELLTVLLENPSDDSVEVAVGFVTE 822
            QLKRAYKRNDKPQLLAAVKFIAHLVNQQVAHEIIALELLTVLLENP+DDSVEVAVGFVTE
Sbjct: 332  QLKRAYKRNDKPQLLAAVKFIAHLVNQQVAHEIIALELLTVLLENPTDDSVEVAVGFVTE 391

Query: 823  CGSLLQDLSPKALHGIFERFRGILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPELDL 1002
            CGS+L+DLSPK LHGIFERFRGILHEGEIDKRVQFLIEGLFAIRKAKF+GYPAVRPELDL
Sbjct: 392  CGSILKDLSPKGLHGIFERFRGILHEGEIDKRVQFLIEGLFAIRKAKFEGYPAVRPELDL 451

Query: 1003 VDQEDQLTHELSLEDEIDPETSLDIFKADPLFLENEKRYEVLKKSILG--XXXXXXXXXX 1176
            V+QEDQLTHE+SL++EIDPE +LDIFK+DP FLENEKRYE LKK ILG            
Sbjct: 452  VEQEDQLTHEISLQEEIDPEITLDIFKSDPNFLENEKRYEDLKKXILGEESEDEEDRSDA 511

Query: 1177 XXXXXXXXXXXXXXXXXXXXQMKIKDETETDLVNLRRTIYLTIMSSVDFEEAGHKLLKIK 1356
                                QM+I DETET+LVNLRRTIYLTIMSSVDFEEAGHKLLKIK
Sbjct: 512  GSDESEDEDEEDESEEEDEEQMQINDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIK 571

Query: 1357 LEPGQEMELCIMLLECCSQERTYLRYYGLLGQRFCNINKIHQENFETCFVKQYSSIHQLE 1536
            LEPGQE+ELC+MLLECCSQERTYLRYYGLLGQRFC INK++QENF+ CFV+QYS IH+LE
Sbjct: 572  LEPGQEIELCVMLLECCSQERTYLRYYGLLGQRFCKINKVYQENFDKCFVQQYSMIHRLE 631

Query: 1537 TNKLRNVAKFFAHLLGTDALPWHVLSYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLN 1716
            TNKLRNVAKFFAHLLGTDALPWHVLSYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLN
Sbjct: 632  TNKLRNVAKFFAHLLGTDALPWHVLSYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLN 691

Query: 1717 ERLTDPQMQESFDSIFPKDNPKNTRFSINFFTSIGLGGITENLREYLKNMPRLIMQQK 1890
            ERLTDP MQ+SF+SIFP+DNPKNTRFSINFFTSIGLGG+TENLREY KNMPRLIMQQ+
Sbjct: 692  ERLTDPTMQDSFESIFPRDNPKNTRFSINFFTSIGLGGLTENLREYXKNMPRLIMQQQ 749


>ref|XP_002265479.1| PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Vitis vinifera]
          Length = 785

 Score =  893 bits (2308), Expect = 0.0
 Identities = 454/542 (83%), Positives = 483/542 (89%), Gaps = 6/542 (1%)
 Frame = +1

Query: 283  NDSVAKAGKTGGAYIPPFKLAQMMKGVEDKSSIEYQRLTWDALRKSINGLVNKVNAANIK 462
            N  V+  G++GG YIPPFKLAQMMK V+DKSSIEYQRLTWDALRKSINGLVNKVNA NIK
Sbjct: 195  NADVSNWGRSGGVYIPPFKLAQMMKEVQDKSSIEYQRLTWDALRKSINGLVNKVNATNIK 254

Query: 463  NIVPELFEENMIRGRGLFCRSCMKSQMASSRFTDVFSALVAVVNTKFPEVGELLLRRIVL 642
            NI+PELF EN+IRGRGLFCRSCMKSQMAS  FTDVF+ALVAVVNTKFPEVGELL+RRIVL
Sbjct: 255  NIIPELFGENLIRGRGLFCRSCMKSQMASPGFTDVFAALVAVVNTKFPEVGELLMRRIVL 314

Query: 643  QLKRAYKRNDKPQLLAAVKFIAHLVNQQVAHEIIALELLTVLLENPSDDSVEVAVGFVTE 822
            Q KRAYKRNDK QLLAAVKFIAHLVNQQVAHEIIALELL ++LENP+DDSVEVAVGFV E
Sbjct: 315  QFKRAYKRNDKHQLLAAVKFIAHLVNQQVAHEIIALELLALMLENPTDDSVEVAVGFVKE 374

Query: 823  CGSLLQDLSPKALHGIFERFRGILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPELDL 1002
            CGS+LQDLSPK LHGIFERFRGILHEGEIDKRVQFLIEGLFAIRKAKFQG+PAVRPELDL
Sbjct: 375  CGSILQDLSPKGLHGIFERFRGILHEGEIDKRVQFLIEGLFAIRKAKFQGHPAVRPELDL 434

Query: 1003 VDQEDQLTHELSLEDEIDPETSLDIFKADPLFLENEKRYEVLKKSILG------XXXXXX 1164
            V+QEDQLTHE+SLE++IDPE +LDIFK DP FLE+EKRYE LKK+ILG            
Sbjct: 435  VEQEDQLTHEISLEEKIDPEITLDIFKPDPQFLESEKRYEELKKTILGEESEDEAGSDAG 494

Query: 1165 XXXXXXXXXXXXXXXXXXXXXXXXQMKIKDETETDLVNLRRTIYLTIMSSVDFEEAGHKL 1344
                                    QMKIKDETET+LVNLRRTIYLTIMSS+DFEEAGHKL
Sbjct: 495  SDDEDEDEDDDEDDDEDDDEEDEQQMKIKDETETNLVNLRRTIYLTIMSSIDFEEAGHKL 554

Query: 1345 LKIKLEPGQEMELCIMLLECCSQERTYLRYYGLLGQRFCNINKIHQENFETCFVKQYSSI 1524
            LKIKLEPGQEMELCIMLLECCSQERTYLRYYGLLGQRFC INK+HQENFE CFV+QYS I
Sbjct: 555  LKIKLEPGQEMELCIMLLECCSQERTYLRYYGLLGQRFCMINKVHQENFEKCFVQQYSMI 614

Query: 1525 HQLETNKLRNVAKFFAHLLGTDALPWHVLSYIRLTEEDTTSSSRIFIKILFQELSEHLGI 1704
            H+LETNKLRNVAKFFAHLLGTDALPWHVL+YIRLTEEDTTSSSRIFIKILFQELSEHLGI
Sbjct: 615  HRLETNKLRNVAKFFAHLLGTDALPWHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGI 674

Query: 1705 RLLNERLTDPQMQESFDSIFPKDNPKNTRFSINFFTSIGLGGITENLREYLKNMPRLIMQ 1884
            RLLNERLTDP MQ+SF+SIFPKDNPKNTRFSINFFTSIGLGGITENLREYLKNMPRLIMQ
Sbjct: 675  RLLNERLTDPSMQDSFESIFPKDNPKNTRFSINFFTSIGLGGITENLREYLKNMPRLIMQ 734

Query: 1885 QK 1890
            Q+
Sbjct: 735  QQ 736


Top