BLASTX nr result
ID: Coptis24_contig00007349
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00007349
(1363 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI20322.3| unnamed protein product [Vitis vinifera] 219 2e-97
ref|XP_002282230.1| PREDICTED: pentatricopeptide repeat-containi... 219 2e-97
ref|XP_003632962.1| PREDICTED: pentatricopeptide repeat-containi... 234 1e-96
emb|CAN64166.1| hypothetical protein VITISV_006333 [Vitis vinifera] 233 6e-96
ref|XP_002519054.1| pentatricopeptide repeat-containing protein,... 216 7e-88
>emb|CBI20322.3| unnamed protein product [Vitis vinifera]
Length = 687
Score = 219 bits (559), Expect(3) = 2e-97
Identities = 112/158 (70%), Positives = 130/158 (82%)
Frame = +2
Query: 2 INSYGARSNIDEMEKVLVEMESQSHISMDWSTYATVANFYIKAGLTDKAVATLKKSEENL 181
INSYGARS+++ MEK+L EMES+SHI +DW TY+ VANFYIKAGL +KA+ LKK+E L
Sbjct: 215 INSYGARSDLNSMEKILEEMESKSHIHIDWMTYSMVANFYIKAGLNEKALFFLKKAETKL 274
Query: 182 FKRDGLAYNYLISLYASLGNKAEVTRLWERKKIACKKYINVDYITMLGSLVKLGELEVAE 361
K D L YN+LISLYASLG+KAE+ RLWER+K A KK IN DYITMLGSLVKLGELE E
Sbjct: 275 HK-DPLGYNHLISLYASLGSKAEMMRLWERRKTASKKLINRDYITMLGSLVKLGELEDTE 333
Query: 362 KLLKEWESSGNSYDFRVPNVILIAYSKSGLTEKAEAML 475
LLKEWESSGN YDFRVPN +LI + + GL EKAE+ML
Sbjct: 334 ALLKEWESSGNCYDFRVPNTLLIGFCQKGLIEKAESML 371
Score = 98.6 bits (244), Expect(3) = 2e-97
Identities = 46/69 (66%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Frame = +3
Query: 531 AEAMLEDLTEKGKIPIPNSWGIVAAGYVQKNEMEKAVRCIKMAFSV-NENGGWKPNPKVI 707
AE+ML D+ E+GK P PNSW IVAAGY++K MEKA C+K A +V EN GW+P PKVI
Sbjct: 367 AESMLRDIVEEGKTPTPNSWSIVAAGYIEKQNMEKAFECMKEAIAVLAENKGWRPKPKVI 426
Query: 708 SSILSWLGD 734
SSILSWLGD
Sbjct: 427 SSILSWLGD 435
Score = 87.8 bits (216), Expect(3) = 2e-97
Identities = 41/58 (70%), Positives = 49/58 (84%)
Frame = +1
Query: 826 VGLLKDFVPMNKNMYHALIKAKVRAGKDVDGLLDSMKTDKIDEDEETKKILSLKEDKA 999
V LK +PM++ MYHA I+A +RAGK+VDG+LDSMK DKIDEDEET+KILSLK DKA
Sbjct: 446 VSALKAVIPMDREMYHAQIRASIRAGKEVDGILDSMKADKIDEDEETRKILSLKHDKA 503
>ref|XP_002282230.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
mitochondrial [Vitis vinifera]
Length = 504
Score = 219 bits (559), Expect(3) = 2e-97
Identities = 112/158 (70%), Positives = 130/158 (82%)
Frame = +2
Query: 2 INSYGARSNIDEMEKVLVEMESQSHISMDWSTYATVANFYIKAGLTDKAVATLKKSEENL 181
INSYGARS+++ MEK+L EMES+SHI +DW TY+ VANFYIKAGL +KA+ LKK+E L
Sbjct: 215 INSYGARSDLNSMEKILEEMESKSHIHIDWMTYSMVANFYIKAGLNEKALFFLKKAETKL 274
Query: 182 FKRDGLAYNYLISLYASLGNKAEVTRLWERKKIACKKYINVDYITMLGSLVKLGELEVAE 361
K D L YN+LISLYASLG+KAE+ RLWER+K A KK IN DYITMLGSLVKLGELE E
Sbjct: 275 HK-DPLGYNHLISLYASLGSKAEMMRLWERRKTASKKLINRDYITMLGSLVKLGELEDTE 333
Query: 362 KLLKEWESSGNSYDFRVPNVILIAYSKSGLTEKAEAML 475
LLKEWESSGN YDFRVPN +LI + + GL EKAE+ML
Sbjct: 334 ALLKEWESSGNCYDFRVPNTLLIGFCQKGLIEKAESML 371
Score = 98.6 bits (244), Expect(3) = 2e-97
Identities = 46/69 (66%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Frame = +3
Query: 531 AEAMLEDLTEKGKIPIPNSWGIVAAGYVQKNEMEKAVRCIKMAFSV-NENGGWKPNPKVI 707
AE+ML D+ E+GK P PNSW IVAAGY++K MEKA C+K A +V EN GW+P PKVI
Sbjct: 367 AESMLRDIVEEGKTPTPNSWSIVAAGYIEKQNMEKAFECMKEAIAVLAENKGWRPKPKVI 426
Query: 708 SSILSWLGD 734
SSILSWLGD
Sbjct: 427 SSILSWLGD 435
Score = 87.8 bits (216), Expect(3) = 2e-97
Identities = 41/58 (70%), Positives = 49/58 (84%)
Frame = +1
Query: 826 VGLLKDFVPMNKNMYHALIKAKVRAGKDVDGLLDSMKTDKIDEDEETKKILSLKEDKA 999
V LK +PM++ MYHA I+A +RAGK+VDG+LDSMK DKIDEDEET+KILSLK DKA
Sbjct: 446 VSALKAVIPMDREMYHAQIRASIRAGKEVDGILDSMKADKIDEDEETRKILSLKHDKA 503
>ref|XP_003632962.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
mitochondrial-like [Vitis vinifera]
Length = 506
Score = 234 bits (596), Expect(3) = 1e-96
Identities = 117/158 (74%), Positives = 131/158 (82%)
Frame = +2
Query: 2 INSYGARSNIDEMEKVLVEMESQSHISMDWSTYATVANFYIKAGLTDKAVATLKKSEENL 181
INSYGA+S+I ME VL EME Q HI MDW+TYA ANFYIKAGL DKA+ LKKSEE L
Sbjct: 217 INSYGAQSDIQGMENVLKEMERQPHIVMDWNTYAVAANFYIKAGLPDKAIEALKKSEERL 276
Query: 182 FKRDGLAYNYLISLYASLGNKAEVTRLWERKKIACKKYINVDYITMLGSLVKLGELEVAE 361
KRDGL YN+LISLYASLGNKAEV RLW +K ACK+ IN DYITML SLV+LGELE AE
Sbjct: 277 DKRDGLGYNHLISLYASLGNKAEVLRLWSLEKSACKRNINRDYITMLESLVRLGELEEAE 336
Query: 362 KLLKEWESSGNSYDFRVPNVILIAYSKSGLTEKAEAML 475
K+L+EWESSGN YDFRVPN+++I YS+ GL EKAEAML
Sbjct: 337 KVLREWESSGNCYDFRVPNIVIIGYSEKGLFEKAEAML 374
Score = 90.1 bits (222), Expect(3) = 1e-96
Identities = 44/69 (63%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Frame = +3
Query: 531 AEAMLEDLTEKGKIPIPNSWGIVAAGYVQKNEMEKAVRCIKMAFSVN-ENGGWKPNPKVI 707
AEAML++L EKGKI PNSWG VA+GY+ + EMEKAV C+K A S++ N G KPN +VI
Sbjct: 370 AEAMLKELMEKGKITTPNSWGTVASGYMDEGEMEKAVECMKAAISLHVNNKGRKPNSRVI 429
Query: 708 SSILSWLGD 734
+ ILSWLGD
Sbjct: 430 AGILSWLGD 438
Score = 79.0 bits (193), Expect(3) = 1e-96
Identities = 38/57 (66%), Positives = 45/57 (78%)
Frame = +1
Query: 826 VGLLKDFVPMNKNMYHALIKAKVRAGKDVDGLLDSMKTDKIDEDEETKKILSLKEDK 996
VG L+ +PMN+ MYH LI A +RAGK+VDGLL SMK DKI EDEETKKIL K++K
Sbjct: 449 VGSLRIVIPMNRRMYHTLIMANIRAGKEVDGLLASMKADKIVEDEETKKILGTKQNK 505
>emb|CAN64166.1| hypothetical protein VITISV_006333 [Vitis vinifera]
Length = 506
Score = 233 bits (595), Expect(3) = 6e-96
Identities = 117/158 (74%), Positives = 131/158 (82%)
Frame = +2
Query: 2 INSYGARSNIDEMEKVLVEMESQSHISMDWSTYATVANFYIKAGLTDKAVATLKKSEENL 181
INSY A+S+I MEKVL EME Q HI MDW+TYA ANFYIKAGL DKA+ LKKSEE L
Sbjct: 217 INSYAAQSDIQGMEKVLKEMERQPHIVMDWNTYAVAANFYIKAGLPDKAIEALKKSEERL 276
Query: 182 FKRDGLAYNYLISLYASLGNKAEVTRLWERKKIACKKYINVDYITMLGSLVKLGELEVAE 361
KRDGL YN+LISLYASLGNKAEV RLW +K ACK+ IN DYITML SLV+LGELE AE
Sbjct: 277 DKRDGLGYNHLISLYASLGNKAEVLRLWSLEKSACKRNINRDYITMLESLVRLGELEEAE 336
Query: 362 KLLKEWESSGNSYDFRVPNVILIAYSKSGLTEKAEAML 475
K+L+EWESSGN YDFRVPN+++I YS+ GL EKAEAML
Sbjct: 337 KVLREWESSGNCYDFRVPNIVIIGYSEKGLFEKAEAML 374
Score = 88.2 bits (217), Expect(3) = 6e-96
Identities = 43/69 (62%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Frame = +3
Query: 531 AEAMLEDLTEKGKIPIPNSWGIVAAGYVQKNEMEKAVRCIKMAFSVN-ENGGWKPNPKVI 707
AEAML++L EKGKI P+SWG VA+GY+ + EMEKAV C+K A S++ N G KPN +VI
Sbjct: 370 AEAMLKELMEKGKITTPDSWGTVASGYMDEGEMEKAVECMKAAISLHVNNKGRKPNSRVI 429
Query: 708 SSILSWLGD 734
+ ILSWLGD
Sbjct: 430 AGILSWLGD 438
Score = 79.0 bits (193), Expect(3) = 6e-96
Identities = 38/57 (66%), Positives = 45/57 (78%)
Frame = +1
Query: 826 VGLLKDFVPMNKNMYHALIKAKVRAGKDVDGLLDSMKTDKIDEDEETKKILSLKEDK 996
VG L+ +PMN+ MYH LI A +RAGK+VDGLL SMK DKI EDEETKKIL K++K
Sbjct: 449 VGSLRIVIPMNRRMYHTLIMANIRAGKEVDGLLASMKADKIVEDEETKKILGTKQNK 505
>ref|XP_002519054.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223541717|gb|EEF43265.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 485
Score = 216 bits (549), Expect(3) = 7e-88
Identities = 106/158 (67%), Positives = 130/158 (82%)
Frame = +2
Query: 2 INSYGARSNIDEMEKVLVEMESQSHISMDWSTYATVANFYIKAGLTDKAVATLKKSEENL 181
INSYGARS+I MEKVL EME + +MDW+TYA VANFYIKAGL DKAV L+KSEE L
Sbjct: 192 INSYGARSDIQGMEKVLNEMECRLGNAMDWNTYAVVANFYIKAGLADKAVDALRKSEEKL 251
Query: 182 FKRDGLAYNYLISLYASLGNKAEVTRLWERKKIACKKYINVDYITMLGSLVKLGELEVAE 361
K+DG+ YN+LISLYA+LG K+EV R+W+ +K CK+ IN D++TML SLVKLG+LE AE
Sbjct: 252 DKKDGIGYNHLISLYATLGIKSEVLRIWDLQKSVCKRRINRDFVTMLESLVKLGDLEEAE 311
Query: 362 KLLKEWESSGNSYDFRVPNVILIAYSKSGLTEKAEAML 475
K+LKEWESSGN YD R+PN++++ YSK+GL EKAEA L
Sbjct: 312 KVLKEWESSGNFYDVRIPNIVVVGYSKNGLHEKAEASL 349
Score = 87.4 bits (215), Expect(3) = 7e-88
Identities = 40/69 (57%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Frame = +3
Query: 531 AEAMLEDLTEKGKIPIPNSWGIVAAGYVQKNEMEKAVRCIKMAFSVN-ENGGWKPNPKVI 707
AEA LE L EKG+ PNSW ++A+GY++K E KA C+K AFS+N E GWKPNP+V+
Sbjct: 345 AEASLEALMEKGRATTPNSWAMIASGYLEKGEKAKAFECMKAAFSLNVEKKGWKPNPRVV 404
Query: 708 SSILSWLGD 734
IL WLGD
Sbjct: 405 MDILIWLGD 413
Score = 70.5 bits (171), Expect(3) = 7e-88
Identities = 31/55 (56%), Positives = 43/55 (78%)
Frame = +1
Query: 826 VGLLKDFVPMNKNMYHALIKAKVRAGKDVDGLLDSMKTDKIDEDEETKKILSLKE 990
V L +P+N+ +YHAL+KAK+R+G+D +LD MKTDKIDEDEETK+IL + +
Sbjct: 424 VASLSVAIPLNRQIYHALLKAKIRSGRDAHEILDRMKTDKIDEDEETKEILGISK 478