BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00007238
         (1322 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276760.2| PREDICTED: probable ribosome biogenesis prot...   410   e-112
ref|XP_002528990.1| conserved hypothetical protein [Ricinus comm...   389   e-106
gb|AAZ67589.1| 80A08_4 [Brassica rapa subsp. pekinensis]              383   e-104
ref|XP_004163491.1| PREDICTED: ribosome biogenesis protein TSR3 ...   379   e-102
ref|XP_004149142.1| PREDICTED: ribosome biogenesis protein TSR3 ...   377   e-102

>ref|XP_002276760.2| PREDICTED: probable ribosome biogenesis protein C16orf42 homolog
            [Vitis vinifera]
          Length = 302

 Score =  410 bits (1053), Expect = e-112
 Identities = 217/306 (70%), Positives = 236/306 (77%), Gaps = 13/306 (4%)
 Frame = -2

Query: 1198 MGHSKPRRQRGHNYHESSHHRGQSSKFREPSREDQNENGDSLPTAQDE---------ANE 1046
            MGH+K RR +GH       HRGQSS+F+EP RE      DSLPT Q           A E
Sbjct: 1    MGHNKARRFKGHQ-----SHRGQSSRFQEPLREY-----DSLPTDQVAMGFNFCAVAAEE 50

Query: 1045 EGPLVPNIQLAMWDFGQCDAKKCTGRKLSRFGLLKE----LRVTSGFGGIVLSPVGTQCV 878
            E   VP +QLAMWDFGQCDAK+CTGRKLSRFGLLKE    LRVTSGFGGI LSPVG QCV
Sbjct: 51   EELSVPKVQLAMWDFGQCDAKRCTGRKLSRFGLLKESIRLLRVTSGFGGIALSPVGNQCV 110

Query: 877  SKEDHLLMKRKGLAVVDCSWARLSDVPFVKLRCSAPRLLPWLVAANPVNYGRPCQLSCVE 698
            SKED++L+KRKGLAVVDCSWARLSDVPF KLRC+APRLLPWLVAANPVNYGRPC+LSCVE
Sbjct: 111  SKEDYILIKRKGLAVVDCSWARLSDVPFTKLRCAAPRLLPWLVAANPVNYGRPCELSCVE 170

Query: 697  ALSAALFLCGEEETANLLLGKFKWGHAFLSLNRELLKAYSECNNSAEIISVQNAWLSQNS 518
            ALSAALF+CGEEETANLLLGKFKWGHAFLSLNRELLKAYS+C N AEIISVQNAWLSQ  
Sbjct: 171  ALSAALFICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENGAEIISVQNAWLSQQR 230

Query: 517  RVPRSPSQKDESSEVPVRNETGSDYDSEDGLPPLEKNSNHSIFEQSDSDSEDELPPLEKN 338
               +     DE+      ++ GS  DSEDGLPPLEKN NH   E  +SDSED LPPLEKN
Sbjct: 231  LQVQKALPDDEAGVSSQNDDEGSCDDSEDGLPPLEKNLNHLNLE--ESDSEDGLPPLEKN 288

Query: 337  MNRLAL 320
            +N L L
Sbjct: 289  LNHLNL 294


>ref|XP_002528990.1| conserved hypothetical protein [Ricinus communis]
            gi|223531580|gb|EEF33409.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 285

 Score =  389 bits (999), Expect = e-106
 Identities = 197/294 (67%), Positives = 226/294 (76%), Gaps = 5/294 (1%)
 Frame = -2

Query: 1198 MGHSKPRRQRGHNYHESSHHRGQSSKFREPSREDQNENGDSLPTAQDEANEEGPLVPNIQ 1019
            MGH+KPRR + H+      +RGQSS+     RED++   D +P       E+    P +Q
Sbjct: 1    MGHNKPRRSKSHH-----SNRGQSSRTNLLEREDESLPSDQVP------EEDTNSTPRVQ 49

Query: 1018 LAMWDFGQCDAKKCTGRKLSRFGLLKELRVTSGFGGIVLSPVGTQCVSKEDHLLMKRKGL 839
            LAMWDFGQCDAK+CTGRKL RFGLLKELRV  GFGGIVLSPVG+QCVSK+DH L+KRKGL
Sbjct: 50   LAMWDFGQCDAKRCTGRKLGRFGLLKELRVNCGFGGIVLSPVGSQCVSKQDHSLIKRKGL 109

Query: 838  AVVDCSWARLSDVPFVKLRCSAPRLLPWLVAANPVNYGRPCQLSCVEALSAALFLCGEEE 659
            AVVDCSWARL+DVPFVKLRC+APRLLPWLVAANPVNYGRPC+LSCVEALSAAL +CGEEE
Sbjct: 110  AVVDCSWARLNDVPFVKLRCAAPRLLPWLVAANPVNYGRPCELSCVEALSAALIICGEEE 169

Query: 658  TANLLLGKFKWGHAFLSLNRELLKAYSECNNSAEIISVQNAWLSQNSRVPRSPSQKDESS 479
            TA+LLL KFKWGHAFLSLNRELLKAYSEC NSA+IISVQN WLSQ S+VP++     +S 
Sbjct: 170  TADLLLNKFKWGHAFLSLNRELLKAYSECENSADIISVQNGWLSQQSKVPKA---VPDSE 226

Query: 478  EVPVRNETGSDYDSEDGLPPLEKNSNHSIFEQSDSDSEDE-----LPPLEKNMN 332
            E     + GS  DSEDGLPPLE+N NH  FE SD D         LP  +KN++
Sbjct: 227  EAETSKDEGSCSDSEDGLPPLERNMNHLNFEDSDEDRPAGLLAMLLPVFQKNLS 280


>gb|AAZ67589.1| 80A08_4 [Brassica rapa subsp. pekinensis]
          Length = 449

 Score =  383 bits (983), Expect = e-104
 Identities = 192/299 (64%), Positives = 230/299 (76%), Gaps = 6/299 (2%)
 Frame = -2

Query: 1198 MGHSKPRRQRGHNYHESSHHRGQSSKFREPSREDQNENGDSLPTAQDEANEEGPLVPNIQ 1019
            MG+ K RR RG N +      GQ+S+     RED+     SLP   D  +E+  +VPN+Q
Sbjct: 1    MGYGKHRRSRGGNSNP-----GQTSRTENIGREDE-----SLP--HDPGSEDEAVVPNVQ 48

Query: 1018 LAMWDFGQCDAKKCTGRKLSRFGLLKELRVTSGFGGIVLSPVGTQCVSKEDHLLMKRKGL 839
            LAMWDFGQCDAK+CTGRKL+RF LLKELRV +GFGG+VLSPVG QCVSKED+ L+K +GL
Sbjct: 49   LAMWDFGQCDAKRCTGRKLARFNLLKELRVNTGFGGVVLSPVGRQCVSKEDYALIKSRGL 108

Query: 838  AVVDCSWARLSDVPFVKLRCSAPRLLPWLVAANPVNYGRPCQLSCVEALSAALFLCGEEE 659
            AVVDCSWARL+DVPF KLRC+APRLLPWLVAANPVNYGRPC+LSCVEALSAAL LCGEEE
Sbjct: 109  AVVDCSWARLTDVPFAKLRCTAPRLLPWLVAANPVNYGRPCELSCVEALSAALILCGEEE 168

Query: 658  TANLLLGKFKWGHAFLSLNRELLKAYSECNNSAEIISVQNAWLSQNSRVPRSPSQKDESS 479
            TANLLLGKFKWGHAFLSLN+++LK YS+C NSAEIISVQN+WL+Q +++ + P+   E  
Sbjct: 169  TANLLLGKFKWGHAFLSLNKDILKEYSKCENSAEIISVQNSWLTQQTQISKQPAPLKE-- 226

Query: 478  EVPVRNETGSDYDSEDGLPPLEKNSNHSIFEQSDSDSEDE------LPPLEKNMNRLAL 320
             V    +   D D +DGLPPLE+N NH I E S+ + E+E      LPPLE+NMN + L
Sbjct: 227  HVRKEGDESEDDDEDDGLPPLERNMNHVISEDSEEEDEEEEEEDDGLPPLERNMNHVKL 285


>ref|XP_004163491.1| PREDICTED: ribosome biogenesis protein TSR3 homolog [Cucumis sativus]
          Length = 265

 Score =  379 bits (972), Expect = e-102
 Identities = 196/280 (70%), Positives = 221/280 (78%)
 Frame = -2

Query: 1198 MGHSKPRRQRGHNYHESSHHRGQSSKFREPSREDQNENGDSLPTAQDEANEEGPLVPNIQ 1019
            M H+K RR + H+       RGQS++  +   ED+      LP   D ANEE P  PNIQ
Sbjct: 1    MSHNKTRRFKNHH-----PRRGQSTRGHKFIGEDE-----CLPV--DPANEEEPTRPNIQ 48

Query: 1018 LAMWDFGQCDAKKCTGRKLSRFGLLKELRVTSGFGGIVLSPVGTQCVSKEDHLLMKRKGL 839
            LAMWDFGQCDAK+CTGRKL+RFGLLKELRV SGFGGIVLSPVG  CVSKEDH L+K+KGL
Sbjct: 49   LAMWDFGQCDAKRCTGRKLARFGLLKELRVNSGFGGIVLSPVGVNCVSKEDHSLLKQKGL 108

Query: 838  AVVDCSWARLSDVPFVKLRCSAPRLLPWLVAANPVNYGRPCQLSCVEALSAALFLCGEEE 659
            AVVDCSWARL DVPFVKLRC+APRLLPWLVAANPVNYGRPC+LSCVEAL+AAL +CGE E
Sbjct: 109  AVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRPCELSCVEALAAALIICGEGE 168

Query: 658  TANLLLGKFKWGHAFLSLNRELLKAYSECNNSAEIISVQNAWLSQNSRVPRSPSQKDESS 479
            TA+LLLGKFKWGHAFLS+NRELLK YS C NSA+IISVQNAWLSQ  +VP+ P   ++ S
Sbjct: 169  TADLLLGKFKWGHAFLSVNRELLKQYSACENSADIISVQNAWLSQQRQVPKEPHNVEDKS 228

Query: 478  EVPVRNETGSDYDSEDGLPPLEKNSNHSIFEQSDSDSEDE 359
             V   +E GSD DSEDGLPPLEKN NH   +Q +SD E E
Sbjct: 229  SVSEHDE-GSD-DSEDGLPPLEKNLNHLTLQQ-ESDEESE 265


>ref|XP_004149142.1| PREDICTED: ribosome biogenesis protein TSR3 homolog [Cucumis sativus]
          Length = 265

 Score =  377 bits (967), Expect = e-102
 Identities = 195/280 (69%), Positives = 220/280 (78%)
 Frame = -2

Query: 1198 MGHSKPRRQRGHNYHESSHHRGQSSKFREPSREDQNENGDSLPTAQDEANEEGPLVPNIQ 1019
            M H+K RR + H+       RGQS++  +   ED+      LP   D ANEE P  PNI 
Sbjct: 1    MSHNKTRRFKNHH-----PRRGQSTRGHKFIGEDE-----CLPV--DPANEEEPTRPNIH 48

Query: 1018 LAMWDFGQCDAKKCTGRKLSRFGLLKELRVTSGFGGIVLSPVGTQCVSKEDHLLMKRKGL 839
            LAMWDFGQCDAK+CTGRKL+RFGLLKELRV SGFGGIVLSPVG  CVSKEDH L+K+KGL
Sbjct: 49   LAMWDFGQCDAKRCTGRKLARFGLLKELRVNSGFGGIVLSPVGVNCVSKEDHSLLKQKGL 108

Query: 838  AVVDCSWARLSDVPFVKLRCSAPRLLPWLVAANPVNYGRPCQLSCVEALSAALFLCGEEE 659
            AVVDCSWARL DVPFVKLRC+APRLLPWLVAANPVNYGRPC+LSCVEAL+AAL +CGE E
Sbjct: 109  AVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRPCELSCVEALAAALIICGEGE 168

Query: 658  TANLLLGKFKWGHAFLSLNRELLKAYSECNNSAEIISVQNAWLSQNSRVPRSPSQKDESS 479
            TA+LLLGKFKWGHAFLS+NRELLK YS C NSA+IISVQNAWLSQ  +VP+ P   ++ S
Sbjct: 169  TADLLLGKFKWGHAFLSVNRELLKQYSACENSADIISVQNAWLSQQRQVPKEPHNVEDKS 228

Query: 478  EVPVRNETGSDYDSEDGLPPLEKNSNHSIFEQSDSDSEDE 359
             V   +E GSD DSEDGLPPLEKN NH   +Q +SD E E
Sbjct: 229  SVSEHDE-GSD-DSEDGLPPLEKNLNHLTLQQ-ESDEESE 265