BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00007229
         (1954 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002530895.1| dead box ATP-dependent RNA helicase, putativ...   425   e-116
ref|XP_004138675.1| PREDICTED: pre-mRNA-processing ATP-dependent...   408   e-111
ref|XP_003519029.1| PREDICTED: pre-mRNA-processing ATP-dependent...   397   e-108
ref|XP_003590262.1| DEAD-box ATP-dependent RNA helicase [Medicag...   391   e-106
ref|XP_002441826.1| hypothetical protein SORBIDRAFT_08g002960 [S...   363   7e-98

>ref|XP_002530895.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
            gi|223529548|gb|EEF31501.1| dead box ATP-dependent RNA
            helicase, putative [Ricinus communis]
          Length = 493

 Score =  425 bits (1092), Expect = e-116
 Identities = 255/555 (45%), Positives = 333/555 (60%), Gaps = 1/555 (0%)
 Frame = +1

Query: 64   MPKGDDALXXXXXXXXXXXXXADTSTSNVSSRIAGIIASKQRRKAGKRRKCEGMCFSLPS 243
            M KGDD +              + S SNVS+R+A IIA+K+RR +GKRR C+GMCFSLP+
Sbjct: 1    MAKGDDTVTKKRNKAKRKKLNRENS-SNVSARVASIIAAKKRRLSGKRRMCQGMCFSLPT 59

Query: 244  PDDPFNDNNGLKNFNKPAPSETEAGASVTQKGDASRKVFSSRQRDPQKDKSKNVLTSLFG 423
             DDPFN+ +G  + N                                KDK K V      
Sbjct: 60   LDDPFNERHGRMDINV-------------------------------KDKKKKV------ 82

Query: 424  KYERNTVQKVETKDGMLGKGGVIRTQRRLHGSSDGPSKFLTACLKSIQNTLL-DKSLSDR 600
                NT +KV+        G  +  Q +    SDGPSKF   CL +I+  L  D + +D 
Sbjct: 83   ----NTREKVQLN------GNDLNHQEQACDYSDGPSKFFILCLNAIEKALRHDGTYNDE 132

Query: 601  KSENSLLLNQWGAEFLTCSLLGTDILETTGGCSSEEQIAWMVSXXXXXXXXKEKEGLSVP 780
              E  LL+N WG EFL    +G DILET+G   + EQIAW+VS        KEKEGLS  
Sbjct: 133  --EKPLLVNPWGLEFLKFCSIGKDILETSGSSCTIEQIAWIVSIAADAIARKEKEGLSFS 190

Query: 781  NPFLLILVPSKEKAIQVRLLCKPLKALGIHTVSLHTGASLDHQIDGLKCCEPEFIISTPE 960
            +PFLL LVPS+EKA +VR++CKPLK LG+HTVSLH GASLDHQI GLK CEPEF++STPE
Sbjct: 191  SPFLLFLVPSQEKAAKVRMVCKPLKDLGVHTVSLHAGASLDHQIRGLKSCEPEFLVSTPE 250

Query: 961  RLLELVSLKAIDISGLSFLVVDGLKSFAISGLLDNVNSIRQATLGASLTVVFCDSFGPLS 1140
            RL+EL+SLKAIDI+G+SFLVVDGL S    G L ++ SIRQ+  G   TV F + F    
Sbjct: 251  RLMELISLKAIDITGVSFLVVDGLDSLYQDGSLGSLKSIRQSISGNPHTVAFNNLFNHAC 310

Query: 1141 TSAVQSLLGGPISRLSLSDSIASQSACISQCVHMCTPEEKPSKGIHVLNQECGKRTSSDH 1320
              A+Q+L  G I+RLSLSDSI SQSACI Q + +CT E+K       L++ C  R     
Sbjct: 311  VPALQNLFVGSINRLSLSDSICSQSACIFQTIEVCTSEQKK------LSKLCSHRL---- 360

Query: 1321 HKVLFVEEISSKARSSAAALIAEGYAMSNDTSDCLEVAYCKETTTVTVTDLEHVHNRTDM 1500
             K+LF+ E + KA S    L + GY++S +++  +     +    V+V + EH+ +  D+
Sbjct: 361  -KLLFIVENNKKAASLVKILKSNGYSVSTESNCEVSNVDTRMKPVVSVINAEHI-STADL 418

Query: 1501 GEFEIVVVINFPPEIDDYVEILTRMARQSVNGVLHCCFCQEDASLAGPLIDILEQCEQNV 1680
            G +EI+++ NF   ID+Y++ILTRMAR + +G+LH    +EDA LAGPLI+ILEQC Q V
Sbjct: 419  GVYEIIILPNFVLSIDNYIQILTRMARHTTHGILHSFMTEEDALLAGPLIEILEQCGQAV 478

Query: 1681 PEFLRSYHNSVSMSE 1725
            PE LR+ H   SMSE
Sbjct: 479  PETLRTLHLRSSMSE 493


>ref|XP_004138675.1| PREDICTED: pre-mRNA-processing ATP-dependent RNA helicase prp5-like
            [Cucumis sativus] gi|449517699|ref|XP_004165882.1|
            PREDICTED: pre-mRNA-processing ATP-dependent RNA helicase
            prp5-like [Cucumis sativus]
          Length = 562

 Score =  408 bits (1049), Expect = e-111
 Identities = 253/565 (44%), Positives = 333/565 (58%), Gaps = 20/565 (3%)
 Frame = +1

Query: 64   MPKGDDALXXXXXXXXXXXXXADTSTSN-VSSRIAGIIASKQRRKAGKRRKCEGMCFSLP 240
            M KGDDAL             + +  S+ VS+R+A IIA+K+RR +GKRR+C+GMCFSLP
Sbjct: 1    MAKGDDALTRKRNKASRKKLRSKSGDSSAVSARVASIIAAKKRRMSGKRRQCQGMCFSLP 60

Query: 241  SPDDPFNDNNGLKNFN-KPAPS---ETEAGASVTQKGDASRKVFSSRQRDPQKDKSKNVL 408
            +PDDP+ND NG K+   KP+ S   E     S +      R V     R  ++     + 
Sbjct: 61   TPDDPYNDRNGKKDTKVKPSKSSKREFPKEKSTSAPNGTLRDVCFENARSSKEGSGGTLP 120

Query: 409  TSLFGKYERNTVQKVETKDGMLGKGGVIRTQRRLHGSSDGPSKFLTACLKSIQNTLLDKS 588
            +    K  R+      TK+    KG V   Q     SS  PSKFL  CL +I+N L   S
Sbjct: 121  SGRVAK--RSKTDPERTKEYGNAKGSVQGFQEEDSESSVAPSKFLILCLSAIENALYHDS 178

Query: 589  LSDRKSENS-LLLNQWGAEFLTCSLLGTDILETTGGCSSEEQIAWMVSXXXXXXXXKEKE 765
            +   KS N  L  + WG EF  C   G DIL+T+G  S++E+IAW+VS        KEKE
Sbjct: 179  I---KSINKPLFADTWGIEFWKCYSSGKDILDTSGLSSTDEKIAWVVSSAADSIARKEKE 235

Query: 766  GLSVPNPFLLILVPSKEKAIQVRLLCKPLKALGIHTVSLHTGASLDHQIDGLKCCEPEFI 945
            G S  +PFLL LVP++EKA Q+R +CKPLKALG+HTVS+H GASL HQI GLK CEPEF+
Sbjct: 236  GSSFSSPFLLFLVPNQEKATQIRSMCKPLKALGVHTVSIHPGASLGHQIQGLKSCEPEFL 295

Query: 946  ISTPERLLELVSLKAIDISGLSFLVVDGLKSFAISGLLDNVNSIRQATLGASLTVVFCDS 1125
            +STPERLLELV+++AIDISG+S LVVDGL+S +  G LD   SIR++      T+VF DS
Sbjct: 296  VSTPERLLELVAMQAIDISGVSLLVVDGLESLSRGGYLDMTQSIRKSISSKLHTIVFSDS 355

Query: 1126 FGPLSTSAVQSLLGGPISRLSLSDSIASQSACISQCVHMCTPE-EKPSKGIHVLNQECGK 1302
            F       +QSLLGGPI RLSL+ S+A QSACI Q ++  T E EK SK I  L++  G 
Sbjct: 356  FSCAYVPFIQSLLGGPIRRLSLNTSVACQSACIIQSINFYTSEKEKLSKVIQALDRANGS 415

Query: 1303 RTSSDHHKVLFVEEISSKARSSAAALIAEGYAMSNDTSDCLEVAYC-------------K 1443
            +      K+LF+          AAAL  +G+       D +  A C             K
Sbjct: 416  QIRPQPLKMLFILGKECNVHDLAAALKFKGH-------DIVAGALCGVPEIKNNLKVDGK 468

Query: 1444 ETTTVTVTDLEHVHNRTDMGEFEIVVVINFPPEIDDYVEILTRMARQSVNGVLHCCFCQE 1623
                V  TD+E + N  D+G +E + +++  P ID YVEILT MAR + NGVLH    +E
Sbjct: 469  LRPVVAKTDIEQI-NTIDLGTYESIFILSAFPPIDKYVEILTGMARHTNNGVLHSFISKE 527

Query: 1624 DASLAGPLIDILEQCEQNVPEFLRS 1698
            +AS+AG L++ILEQC Q+VP+ +R+
Sbjct: 528  EASVAGSLVEILEQCGQDVPKTVRN 552


>ref|XP_003519029.1| PREDICTED: pre-mRNA-processing ATP-dependent RNA helicase prp5-like
            [Glycine max]
          Length = 563

 Score =  397 bits (1020), Expect = e-108
 Identities = 239/574 (41%), Positives = 328/574 (57%), Gaps = 20/574 (3%)
 Frame = +1

Query: 64   MPKGDDALXXXXXXXXXXXXXADTSTSNVSSRIAGIIASKQRRKAGKRRKCEGMCFSLPS 243
            M KG+DAL               + +S+VS+++A +IA+K+RRKAGKRR C+GMCFSLP+
Sbjct: 1    MAKGEDALIRKKNKKLRKKN--SSGSSSVSAKVAAVIAAKKRRKAGKRRMCQGMCFSLPT 58

Query: 244  PDDPFNDNNGLKNFNKPAPSETEAG------------ASVTQKGDASRKVFSSRQRDPQK 387
             DDPFND  G +      P +                ++  +KG    +  +    D Q+
Sbjct: 59   LDDPFNDRGGKEETKTKGPKKKSHSKPKDKMDHLNGKSADGKKGAVGGRKIARELNDLQR 118

Query: 388  DK-----SKNVLTSLFGKYERNTVQKVETKDGMLGKGGVIRTQRRLHGSSDGPSKFLTAC 552
            +      S N+        ER  +   E          +  T++R    S+ PSKF+  C
Sbjct: 119  ENESVTASNNLTHKCIINSERKNIDMTEMAH-------LCGTKQRDCDISEFPSKFIFWC 171

Query: 553  LKSIQNTLLDKSLSDRKSENSLLLNQWGAEFLTCSLLGTDILETTGGCSSEEQIAWMVSX 732
            L SI+N L           NS  LN WG EFL C   G D++ET+G  ++ EQIAWMVS 
Sbjct: 172  LSSIENALRHGDAYTDGEGNSFFLNPWGLEFLKCYSTGKDLIETSGTSATAEQIAWMVSG 231

Query: 733  XXXXXXXKEKEGLSVPNPFLLILVPSKEKAIQVRLLCKPLKALGIHTVSLHTGASLDHQI 912
                   KEKEGLS P PFLL LVPS+EK+ QVR +CKPLK++GIHTVS+H GASLDHQI
Sbjct: 232  AADTFVRKEKEGLSFPGPFLLFLVPSQEKSTQVRTVCKPLKSVGIHTVSIHPGASLDHQI 291

Query: 913  DGLKCCEPEFIISTPERLLELVSLKAIDISGLSFLVVDGLKSFAISGLLDNVNSIRQATL 1092
             GLK CEPEF++STPERLLELVS KAIDISG+S LV+DGL +   +G  D V SI+    
Sbjct: 292  QGLKTCEPEFLVSTPERLLELVSTKAIDISGVSMLVIDGLNTICSAGHADTVKSIKNCIS 351

Query: 1093 GASLTVVFCDSFGPLSTSAVQSLLGGPISRLSLSDSIASQSACISQCVHMCTPEE-KPSK 1269
            G    V+F D    +S   V+ LL G I R+SL++SI S S+ I Q V +CT EE K   
Sbjct: 352  GNPRVVIFNDCVSHMSIPMVRYLLTGSICRVSLNNSINSLSSYIIQSVEVCTSEEDKVVM 411

Query: 1270 GIHVLNQECGKRTSSDHHKVLFVEEISSKARSSAAALIAEGYAMS--NDTSDCLEVAYCK 1443
             I  L+Q   +  S+ +  +L++     K       L ++GY++S  +D ++  +     
Sbjct: 412  SIEALDQ--FQSNSTQNSNMLYILSKDVKCHKLVKTLKSKGYSVSLDSDAANINDRVDSD 469

Query: 1444 ETTTVTVTDLEHVHNRTDMGEFEIVVVINFPPEIDDYVEILTRMARQSVNGVLHCCFCQE 1623
                V++ DL  + + TD+G +++VV+ +F P ID YV ILT+MAR SVNGVLH    + 
Sbjct: 470  RRAAVSLIDLVQI-STTDIGTYDVVVLPSFVPSIDTYVHILTKMARTSVNGVLHSFLTKR 528

Query: 1624 DASLAGPLIDILEQCEQNVPEFLRSYHNSVSMSE 1725
            D  LA PLI +LEQC Q VP+ L+  +++ +M E
Sbjct: 529  DTELAAPLIAVLEQCGQEVPQTLQDLNHTSNMLE 562


>ref|XP_003590262.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
            gi|355479310|gb|AES60513.1| DEAD-box ATP-dependent RNA
            helicase [Medicago truncatula]
          Length = 532

 Score =  391 bits (1004), Expect = e-106
 Identities = 240/554 (43%), Positives = 318/554 (57%), Gaps = 5/554 (0%)
 Frame = +1

Query: 64   MPKGDDALXXXXXXXXXXXXXADTSTSNVSSRIAGIIASKQRRKAGKRRKCEGMCFSLPS 243
            M KGDD++                S ++VS++IA +IASK+RRKAGKRR CEGMCFSLPS
Sbjct: 1    MAKGDDSVLKKHNKKLRKK---QNSKNSVSAKIAAVIASKKRRKAGKRRICEGMCFSLPS 57

Query: 244  PDDPFNDNNGLKNFNKPAPSETEAGASVTQKGDASRKVFSSRQRDPQKDKSKNVLTSLFG 423
             DDPFND  G   F K  P                      ++   QK+K+    T + G
Sbjct: 58   LDDPFNDRQGKPEFKKKDPK---------------------KKTSSQKEKT----TPVKG 92

Query: 424  KYERNTVQKVETKDGMLGKGGVIRT---QRRLHGSSDGPSKFLTACLKSIQNTLLDKSLS 594
            K           ++G   K  ++     ++  +  SD PSKF+  CL +I+N L      
Sbjct: 93   KSVPGEKGTAVGRNGANNKSEMVEVCCGEQHDNEVSDFPSKFVFWCLSAIENALRHDDAY 152

Query: 595  DRKSENSLLLNQWGAEFLTCSLLGTDILETTGGCSSEEQIAWMVSXXXXXXXXKEKEGLS 774
                 NS  LN WG EF      G D+++T G  ++ EQIAWMVS        KEK+GLS
Sbjct: 153  TDGEGNSFFLNPWGLEFSKHFSTGKDLIDTGGTFATTEQIAWMVSAAADIFVRKEKQGLS 212

Query: 775  VPNPFLLILVPSKEKAIQVRLLCKPLKALGIHTVSLHTGASLDHQIDGLKCCEPEFIIST 954
            +  PFLL LVPS++KA QVR +CKPLK++GIHTVS+H GASLDHQI GLK CEPEF+IST
Sbjct: 213  LDTPFLLFLVPSEKKAGQVRTVCKPLKSVGIHTVSVHPGASLDHQIQGLKSCEPEFLIST 272

Query: 955  PERLLELVSLKAIDISGLSFLVVDGLKSFAISGLLDNVNSIRQATLGASLTVVFCDSFGP 1134
            PERLLELVSLKAIDISG+S LV+DG  +   +G  D + SI++   G    VVF DSF  
Sbjct: 273  PERLLELVSLKAIDISGISMLVIDGFDAICKAGHADAIKSIKKFISGNPSLVVFNDSFNH 332

Query: 1135 LSTSAVQSLLGGPISRLSLSDSIASQSACISQCVHMCT-PEEKPSKGIHVLNQECGKRTS 1311
             S   V+ LL GPI R+S+++SIAS S+CI Q V +CT  E+K  K I VL Q    +T 
Sbjct: 333  TSIPVVRHLLTGPICRISINNSIASLSSCIVQSVQVCTSDEDKLVKSIEVLRQFRSSQTH 392

Query: 1312 SDHHKVLFVEEISSKARSSAAALIAEGYAMSNDT-SDCLEVAYCKETTTVTVTDLEHVHN 1488
            S +  +L++     K       L + G + S D+ +  +  +       VT+ DLE + +
Sbjct: 393  SSN--LLYILRKDVKCHKLVKTLKSMGCSTSLDSDAATINDSVDSNRRLVTMIDLEDI-S 449

Query: 1489 RTDMGEFEIVVVINFPPEIDDYVEILTRMARQSVNGVLHCCFCQEDASLAGPLIDILEQC 1668
              D+G ++++V+ +  P +D Y  ILT MARQSVNG+LH    + D   AGPLI ILEQC
Sbjct: 450  TLDIGMYDVIVLPSLVPSMDTYEHILTNMARQSVNGILHGFLTKSDTEHAGPLISILEQC 509

Query: 1669 EQNVPEFLRSYHNS 1710
             Q VPE L+  H +
Sbjct: 510  GQEVPETLKDLHQA 523


>ref|XP_002441826.1| hypothetical protein SORBIDRAFT_08g002960 [Sorghum bicolor]
            gi|241942519|gb|EES15664.1| hypothetical protein
            SORBIDRAFT_08g002960 [Sorghum bicolor]
          Length = 529

 Score =  363 bits (933), Expect = 7e-98
 Identities = 231/556 (41%), Positives = 311/556 (55%), Gaps = 7/556 (1%)
 Frame = +1

Query: 64   MPKGDDALXXXXXXXXXXXXXADTSTSNVSSRIAGIIASKQRRKAGKRRKCEGMCFSLPS 243
            M KGDDAL             +  S + VS+R+A IIASK+RRK+GKRR CEGMCFSLP+
Sbjct: 1    MAKGDDALARKRNRVRRKRLRS--SENAVSARVAAIIASKRRRKSGKRRGCEGMCFSLPT 58

Query: 244  PDDPFNDNNGLKNFNKPAPSETEAGASVTQKGDASRKVFSSRQRDPQKDKSKNVLTSLFG 423
            PDDPFN+ +G K      P+E  A A   + GD           DP+K  +         
Sbjct: 59   PDDPFNERHGKKRKVDDEPTEDTAAA---KDGD-----------DPKKKGANTKKEQPVA 104

Query: 424  KYERNTVQKVETKDGMLGKGGVIRTQRRLHGSSDGPSKFLTACLKSIQNTLLDKSLSDRK 603
            K       K + K   + +      + R+    D PSKFL  CL +I++TL  +      
Sbjct: 105  KAGAEAKAKAKAKSKAVRERATGADEGRV--DLDRPSKFLVVCLNAIRDTLAPEDGGGSI 162

Query: 604  SENSLLLNQWGAEFLTC--SLLGTDILETTGGCSSEEQIAWMVSXXXXXXXXKEKEGLSV 777
                     WG E   C  +   +D+L+ +G C++ +Q AW+VS        KE+ G+ V
Sbjct: 163  HG----AGDWGVELWRCCSAQAPSDVLDASGACATVDQTAWLVSTACDIVARKERLGMVV 218

Query: 778  PNPFLLILVPSKEKAIQVRLLCKPLKALGIHTVSLHTGASLDHQIDGLKCCEPEFIISTP 957
              PFLL LVPS+EKA QVR +CKPLK LGIH+VSLH GAS++HQI GLK CEPEF+I+TP
Sbjct: 219  SCPFLLYLVPSQEKAAQVRSICKPLKPLGIHSVSLHPGASIEHQISGLKTCEPEFLIATP 278

Query: 958  ERLLELVSLKAIDISGLSFLVVDGLKSFAISGLLDNVNSIRQATLGASLTVVFCDSFGPL 1137
            ERLLELVSLKAIDIS +S LV+DGLK F      D + SIR A        +F D     
Sbjct: 279  ERLLELVSLKAIDISSVSMLVIDGLKCFVDHNASDKIFSIRDAISNNPQITIFTDPSDKK 338

Query: 1138 STSAVQSLLGGPISRLSLSDSIASQSACISQCVHMCTPEE-KPSKGIHVLN---QECGKR 1305
              +  +SLL G I++LS++DS++S+SA I+Q VH C  EE K SK   +L    Q   K+
Sbjct: 339  VAAMAKSLLRGRITKLSINDSVSSRSAFIAQHVHFCPSEELKTSKVKEILEGILQSHPKK 398

Query: 1306 TSSDHHKVLFVEEISSKARSSAAALIAEGYAMSNDT-SDCLEVAYCKETTTVTVTDLEHV 1482
            TS    KVL V     KAR  +++L  +   + +D+      +        V V D E++
Sbjct: 399  TS----KVLLVVANDQKARYMSSSLKLKNCTVIDDSHGSSFTICSSLGLMNVIVKDRENM 454

Query: 1483 HNRTDMGEFEIVVVINFPPEIDDYVEILTRMARQSVNGVLHCCFCQEDASLAGPLIDILE 1662
               TD  EFE V+V++ PP +D+YVEILT +A   + G +H  FC  DAS+A PL ++L 
Sbjct: 455  -AVTDAEEFETVLVVDLPPSVDEYVEILTGVALHVIGGEVHSIFCNADASIAKPLAELLA 513

Query: 1663 QCEQNVPEFLRSYHNS 1710
             C Q VPEF ++  +S
Sbjct: 514  DCRQVVPEFFKNLESS 529