BLASTX nr result
ID: Coptis24_contig00007229
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00007229 (1954 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002530895.1| dead box ATP-dependent RNA helicase, putativ... 425 e-116 ref|XP_004138675.1| PREDICTED: pre-mRNA-processing ATP-dependent... 408 e-111 ref|XP_003519029.1| PREDICTED: pre-mRNA-processing ATP-dependent... 397 e-108 ref|XP_003590262.1| DEAD-box ATP-dependent RNA helicase [Medicag... 391 e-106 ref|XP_002441826.1| hypothetical protein SORBIDRAFT_08g002960 [S... 363 7e-98 >ref|XP_002530895.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] gi|223529548|gb|EEF31501.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] Length = 493 Score = 425 bits (1092), Expect = e-116 Identities = 255/555 (45%), Positives = 333/555 (60%), Gaps = 1/555 (0%) Frame = +1 Query: 64 MPKGDDALXXXXXXXXXXXXXADTSTSNVSSRIAGIIASKQRRKAGKRRKCEGMCFSLPS 243 M KGDD + + S SNVS+R+A IIA+K+RR +GKRR C+GMCFSLP+ Sbjct: 1 MAKGDDTVTKKRNKAKRKKLNRENS-SNVSARVASIIAAKKRRLSGKRRMCQGMCFSLPT 59 Query: 244 PDDPFNDNNGLKNFNKPAPSETEAGASVTQKGDASRKVFSSRQRDPQKDKSKNVLTSLFG 423 DDPFN+ +G + N KDK K V Sbjct: 60 LDDPFNERHGRMDINV-------------------------------KDKKKKV------ 82 Query: 424 KYERNTVQKVETKDGMLGKGGVIRTQRRLHGSSDGPSKFLTACLKSIQNTLL-DKSLSDR 600 NT +KV+ G + Q + SDGPSKF CL +I+ L D + +D Sbjct: 83 ----NTREKVQLN------GNDLNHQEQACDYSDGPSKFFILCLNAIEKALRHDGTYNDE 132 Query: 601 KSENSLLLNQWGAEFLTCSLLGTDILETTGGCSSEEQIAWMVSXXXXXXXXKEKEGLSVP 780 E LL+N WG EFL +G DILET+G + EQIAW+VS KEKEGLS Sbjct: 133 --EKPLLVNPWGLEFLKFCSIGKDILETSGSSCTIEQIAWIVSIAADAIARKEKEGLSFS 190 Query: 781 NPFLLILVPSKEKAIQVRLLCKPLKALGIHTVSLHTGASLDHQIDGLKCCEPEFIISTPE 960 +PFLL LVPS+EKA +VR++CKPLK LG+HTVSLH GASLDHQI GLK CEPEF++STPE Sbjct: 191 SPFLLFLVPSQEKAAKVRMVCKPLKDLGVHTVSLHAGASLDHQIRGLKSCEPEFLVSTPE 250 Query: 961 RLLELVSLKAIDISGLSFLVVDGLKSFAISGLLDNVNSIRQATLGASLTVVFCDSFGPLS 1140 RL+EL+SLKAIDI+G+SFLVVDGL S G L ++ SIRQ+ G TV F + F Sbjct: 251 RLMELISLKAIDITGVSFLVVDGLDSLYQDGSLGSLKSIRQSISGNPHTVAFNNLFNHAC 310 Query: 1141 TSAVQSLLGGPISRLSLSDSIASQSACISQCVHMCTPEEKPSKGIHVLNQECGKRTSSDH 1320 A+Q+L G I+RLSLSDSI SQSACI Q + +CT E+K L++ C R Sbjct: 311 VPALQNLFVGSINRLSLSDSICSQSACIFQTIEVCTSEQKK------LSKLCSHRL---- 360 Query: 1321 HKVLFVEEISSKARSSAAALIAEGYAMSNDTSDCLEVAYCKETTTVTVTDLEHVHNRTDM 1500 K+LF+ E + KA S L + GY++S +++ + + V+V + EH+ + D+ Sbjct: 361 -KLLFIVENNKKAASLVKILKSNGYSVSTESNCEVSNVDTRMKPVVSVINAEHI-STADL 418 Query: 1501 GEFEIVVVINFPPEIDDYVEILTRMARQSVNGVLHCCFCQEDASLAGPLIDILEQCEQNV 1680 G +EI+++ NF ID+Y++ILTRMAR + +G+LH +EDA LAGPLI+ILEQC Q V Sbjct: 419 GVYEIIILPNFVLSIDNYIQILTRMARHTTHGILHSFMTEEDALLAGPLIEILEQCGQAV 478 Query: 1681 PEFLRSYHNSVSMSE 1725 PE LR+ H SMSE Sbjct: 479 PETLRTLHLRSSMSE 493 >ref|XP_004138675.1| PREDICTED: pre-mRNA-processing ATP-dependent RNA helicase prp5-like [Cucumis sativus] gi|449517699|ref|XP_004165882.1| PREDICTED: pre-mRNA-processing ATP-dependent RNA helicase prp5-like [Cucumis sativus] Length = 562 Score = 408 bits (1049), Expect = e-111 Identities = 253/565 (44%), Positives = 333/565 (58%), Gaps = 20/565 (3%) Frame = +1 Query: 64 MPKGDDALXXXXXXXXXXXXXADTSTSN-VSSRIAGIIASKQRRKAGKRRKCEGMCFSLP 240 M KGDDAL + + S+ VS+R+A IIA+K+RR +GKRR+C+GMCFSLP Sbjct: 1 MAKGDDALTRKRNKASRKKLRSKSGDSSAVSARVASIIAAKKRRMSGKRRQCQGMCFSLP 60 Query: 241 SPDDPFNDNNGLKNFN-KPAPS---ETEAGASVTQKGDASRKVFSSRQRDPQKDKSKNVL 408 +PDDP+ND NG K+ KP+ S E S + R V R ++ + Sbjct: 61 TPDDPYNDRNGKKDTKVKPSKSSKREFPKEKSTSAPNGTLRDVCFENARSSKEGSGGTLP 120 Query: 409 TSLFGKYERNTVQKVETKDGMLGKGGVIRTQRRLHGSSDGPSKFLTACLKSIQNTLLDKS 588 + K R+ TK+ KG V Q SS PSKFL CL +I+N L S Sbjct: 121 SGRVAK--RSKTDPERTKEYGNAKGSVQGFQEEDSESSVAPSKFLILCLSAIENALYHDS 178 Query: 589 LSDRKSENS-LLLNQWGAEFLTCSLLGTDILETTGGCSSEEQIAWMVSXXXXXXXXKEKE 765 + KS N L + WG EF C G DIL+T+G S++E+IAW+VS KEKE Sbjct: 179 I---KSINKPLFADTWGIEFWKCYSSGKDILDTSGLSSTDEKIAWVVSSAADSIARKEKE 235 Query: 766 GLSVPNPFLLILVPSKEKAIQVRLLCKPLKALGIHTVSLHTGASLDHQIDGLKCCEPEFI 945 G S +PFLL LVP++EKA Q+R +CKPLKALG+HTVS+H GASL HQI GLK CEPEF+ Sbjct: 236 GSSFSSPFLLFLVPNQEKATQIRSMCKPLKALGVHTVSIHPGASLGHQIQGLKSCEPEFL 295 Query: 946 ISTPERLLELVSLKAIDISGLSFLVVDGLKSFAISGLLDNVNSIRQATLGASLTVVFCDS 1125 +STPERLLELV+++AIDISG+S LVVDGL+S + G LD SIR++ T+VF DS Sbjct: 296 VSTPERLLELVAMQAIDISGVSLLVVDGLESLSRGGYLDMTQSIRKSISSKLHTIVFSDS 355 Query: 1126 FGPLSTSAVQSLLGGPISRLSLSDSIASQSACISQCVHMCTPE-EKPSKGIHVLNQECGK 1302 F +QSLLGGPI RLSL+ S+A QSACI Q ++ T E EK SK I L++ G Sbjct: 356 FSCAYVPFIQSLLGGPIRRLSLNTSVACQSACIIQSINFYTSEKEKLSKVIQALDRANGS 415 Query: 1303 RTSSDHHKVLFVEEISSKARSSAAALIAEGYAMSNDTSDCLEVAYC-------------K 1443 + K+LF+ AAAL +G+ D + A C K Sbjct: 416 QIRPQPLKMLFILGKECNVHDLAAALKFKGH-------DIVAGALCGVPEIKNNLKVDGK 468 Query: 1444 ETTTVTVTDLEHVHNRTDMGEFEIVVVINFPPEIDDYVEILTRMARQSVNGVLHCCFCQE 1623 V TD+E + N D+G +E + +++ P ID YVEILT MAR + NGVLH +E Sbjct: 469 LRPVVAKTDIEQI-NTIDLGTYESIFILSAFPPIDKYVEILTGMARHTNNGVLHSFISKE 527 Query: 1624 DASLAGPLIDILEQCEQNVPEFLRS 1698 +AS+AG L++ILEQC Q+VP+ +R+ Sbjct: 528 EASVAGSLVEILEQCGQDVPKTVRN 552 >ref|XP_003519029.1| PREDICTED: pre-mRNA-processing ATP-dependent RNA helicase prp5-like [Glycine max] Length = 563 Score = 397 bits (1020), Expect = e-108 Identities = 239/574 (41%), Positives = 328/574 (57%), Gaps = 20/574 (3%) Frame = +1 Query: 64 MPKGDDALXXXXXXXXXXXXXADTSTSNVSSRIAGIIASKQRRKAGKRRKCEGMCFSLPS 243 M KG+DAL + +S+VS+++A +IA+K+RRKAGKRR C+GMCFSLP+ Sbjct: 1 MAKGEDALIRKKNKKLRKKN--SSGSSSVSAKVAAVIAAKKRRKAGKRRMCQGMCFSLPT 58 Query: 244 PDDPFNDNNGLKNFNKPAPSETEAG------------ASVTQKGDASRKVFSSRQRDPQK 387 DDPFND G + P + ++ +KG + + D Q+ Sbjct: 59 LDDPFNDRGGKEETKTKGPKKKSHSKPKDKMDHLNGKSADGKKGAVGGRKIARELNDLQR 118 Query: 388 DK-----SKNVLTSLFGKYERNTVQKVETKDGMLGKGGVIRTQRRLHGSSDGPSKFLTAC 552 + S N+ ER + E + T++R S+ PSKF+ C Sbjct: 119 ENESVTASNNLTHKCIINSERKNIDMTEMAH-------LCGTKQRDCDISEFPSKFIFWC 171 Query: 553 LKSIQNTLLDKSLSDRKSENSLLLNQWGAEFLTCSLLGTDILETTGGCSSEEQIAWMVSX 732 L SI+N L NS LN WG EFL C G D++ET+G ++ EQIAWMVS Sbjct: 172 LSSIENALRHGDAYTDGEGNSFFLNPWGLEFLKCYSTGKDLIETSGTSATAEQIAWMVSG 231 Query: 733 XXXXXXXKEKEGLSVPNPFLLILVPSKEKAIQVRLLCKPLKALGIHTVSLHTGASLDHQI 912 KEKEGLS P PFLL LVPS+EK+ QVR +CKPLK++GIHTVS+H GASLDHQI Sbjct: 232 AADTFVRKEKEGLSFPGPFLLFLVPSQEKSTQVRTVCKPLKSVGIHTVSIHPGASLDHQI 291 Query: 913 DGLKCCEPEFIISTPERLLELVSLKAIDISGLSFLVVDGLKSFAISGLLDNVNSIRQATL 1092 GLK CEPEF++STPERLLELVS KAIDISG+S LV+DGL + +G D V SI+ Sbjct: 292 QGLKTCEPEFLVSTPERLLELVSTKAIDISGVSMLVIDGLNTICSAGHADTVKSIKNCIS 351 Query: 1093 GASLTVVFCDSFGPLSTSAVQSLLGGPISRLSLSDSIASQSACISQCVHMCTPEE-KPSK 1269 G V+F D +S V+ LL G I R+SL++SI S S+ I Q V +CT EE K Sbjct: 352 GNPRVVIFNDCVSHMSIPMVRYLLTGSICRVSLNNSINSLSSYIIQSVEVCTSEEDKVVM 411 Query: 1270 GIHVLNQECGKRTSSDHHKVLFVEEISSKARSSAAALIAEGYAMS--NDTSDCLEVAYCK 1443 I L+Q + S+ + +L++ K L ++GY++S +D ++ + Sbjct: 412 SIEALDQ--FQSNSTQNSNMLYILSKDVKCHKLVKTLKSKGYSVSLDSDAANINDRVDSD 469 Query: 1444 ETTTVTVTDLEHVHNRTDMGEFEIVVVINFPPEIDDYVEILTRMARQSVNGVLHCCFCQE 1623 V++ DL + + TD+G +++VV+ +F P ID YV ILT+MAR SVNGVLH + Sbjct: 470 RRAAVSLIDLVQI-STTDIGTYDVVVLPSFVPSIDTYVHILTKMARTSVNGVLHSFLTKR 528 Query: 1624 DASLAGPLIDILEQCEQNVPEFLRSYHNSVSMSE 1725 D LA PLI +LEQC Q VP+ L+ +++ +M E Sbjct: 529 DTELAAPLIAVLEQCGQEVPQTLQDLNHTSNMLE 562 >ref|XP_003590262.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula] gi|355479310|gb|AES60513.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula] Length = 532 Score = 391 bits (1004), Expect = e-106 Identities = 240/554 (43%), Positives = 318/554 (57%), Gaps = 5/554 (0%) Frame = +1 Query: 64 MPKGDDALXXXXXXXXXXXXXADTSTSNVSSRIAGIIASKQRRKAGKRRKCEGMCFSLPS 243 M KGDD++ S ++VS++IA +IASK+RRKAGKRR CEGMCFSLPS Sbjct: 1 MAKGDDSVLKKHNKKLRKK---QNSKNSVSAKIAAVIASKKRRKAGKRRICEGMCFSLPS 57 Query: 244 PDDPFNDNNGLKNFNKPAPSETEAGASVTQKGDASRKVFSSRQRDPQKDKSKNVLTSLFG 423 DDPFND G F K P ++ QK+K+ T + G Sbjct: 58 LDDPFNDRQGKPEFKKKDPK---------------------KKTSSQKEKT----TPVKG 92 Query: 424 KYERNTVQKVETKDGMLGKGGVIRT---QRRLHGSSDGPSKFLTACLKSIQNTLLDKSLS 594 K ++G K ++ ++ + SD PSKF+ CL +I+N L Sbjct: 93 KSVPGEKGTAVGRNGANNKSEMVEVCCGEQHDNEVSDFPSKFVFWCLSAIENALRHDDAY 152 Query: 595 DRKSENSLLLNQWGAEFLTCSLLGTDILETTGGCSSEEQIAWMVSXXXXXXXXKEKEGLS 774 NS LN WG EF G D+++T G ++ EQIAWMVS KEK+GLS Sbjct: 153 TDGEGNSFFLNPWGLEFSKHFSTGKDLIDTGGTFATTEQIAWMVSAAADIFVRKEKQGLS 212 Query: 775 VPNPFLLILVPSKEKAIQVRLLCKPLKALGIHTVSLHTGASLDHQIDGLKCCEPEFIIST 954 + PFLL LVPS++KA QVR +CKPLK++GIHTVS+H GASLDHQI GLK CEPEF+IST Sbjct: 213 LDTPFLLFLVPSEKKAGQVRTVCKPLKSVGIHTVSVHPGASLDHQIQGLKSCEPEFLIST 272 Query: 955 PERLLELVSLKAIDISGLSFLVVDGLKSFAISGLLDNVNSIRQATLGASLTVVFCDSFGP 1134 PERLLELVSLKAIDISG+S LV+DG + +G D + SI++ G VVF DSF Sbjct: 273 PERLLELVSLKAIDISGISMLVIDGFDAICKAGHADAIKSIKKFISGNPSLVVFNDSFNH 332 Query: 1135 LSTSAVQSLLGGPISRLSLSDSIASQSACISQCVHMCT-PEEKPSKGIHVLNQECGKRTS 1311 S V+ LL GPI R+S+++SIAS S+CI Q V +CT E+K K I VL Q +T Sbjct: 333 TSIPVVRHLLTGPICRISINNSIASLSSCIVQSVQVCTSDEDKLVKSIEVLRQFRSSQTH 392 Query: 1312 SDHHKVLFVEEISSKARSSAAALIAEGYAMSNDT-SDCLEVAYCKETTTVTVTDLEHVHN 1488 S + +L++ K L + G + S D+ + + + VT+ DLE + + Sbjct: 393 SSN--LLYILRKDVKCHKLVKTLKSMGCSTSLDSDAATINDSVDSNRRLVTMIDLEDI-S 449 Query: 1489 RTDMGEFEIVVVINFPPEIDDYVEILTRMARQSVNGVLHCCFCQEDASLAGPLIDILEQC 1668 D+G ++++V+ + P +D Y ILT MARQSVNG+LH + D AGPLI ILEQC Sbjct: 450 TLDIGMYDVIVLPSLVPSMDTYEHILTNMARQSVNGILHGFLTKSDTEHAGPLISILEQC 509 Query: 1669 EQNVPEFLRSYHNS 1710 Q VPE L+ H + Sbjct: 510 GQEVPETLKDLHQA 523 >ref|XP_002441826.1| hypothetical protein SORBIDRAFT_08g002960 [Sorghum bicolor] gi|241942519|gb|EES15664.1| hypothetical protein SORBIDRAFT_08g002960 [Sorghum bicolor] Length = 529 Score = 363 bits (933), Expect = 7e-98 Identities = 231/556 (41%), Positives = 311/556 (55%), Gaps = 7/556 (1%) Frame = +1 Query: 64 MPKGDDALXXXXXXXXXXXXXADTSTSNVSSRIAGIIASKQRRKAGKRRKCEGMCFSLPS 243 M KGDDAL + S + VS+R+A IIASK+RRK+GKRR CEGMCFSLP+ Sbjct: 1 MAKGDDALARKRNRVRRKRLRS--SENAVSARVAAIIASKRRRKSGKRRGCEGMCFSLPT 58 Query: 244 PDDPFNDNNGLKNFNKPAPSETEAGASVTQKGDASRKVFSSRQRDPQKDKSKNVLTSLFG 423 PDDPFN+ +G K P+E A A + GD DP+K + Sbjct: 59 PDDPFNERHGKKRKVDDEPTEDTAAA---KDGD-----------DPKKKGANTKKEQPVA 104 Query: 424 KYERNTVQKVETKDGMLGKGGVIRTQRRLHGSSDGPSKFLTACLKSIQNTLLDKSLSDRK 603 K K + K + + + R+ D PSKFL CL +I++TL + Sbjct: 105 KAGAEAKAKAKAKSKAVRERATGADEGRV--DLDRPSKFLVVCLNAIRDTLAPEDGGGSI 162 Query: 604 SENSLLLNQWGAEFLTC--SLLGTDILETTGGCSSEEQIAWMVSXXXXXXXXKEKEGLSV 777 WG E C + +D+L+ +G C++ +Q AW+VS KE+ G+ V Sbjct: 163 HG----AGDWGVELWRCCSAQAPSDVLDASGACATVDQTAWLVSTACDIVARKERLGMVV 218 Query: 778 PNPFLLILVPSKEKAIQVRLLCKPLKALGIHTVSLHTGASLDHQIDGLKCCEPEFIISTP 957 PFLL LVPS+EKA QVR +CKPLK LGIH+VSLH GAS++HQI GLK CEPEF+I+TP Sbjct: 219 SCPFLLYLVPSQEKAAQVRSICKPLKPLGIHSVSLHPGASIEHQISGLKTCEPEFLIATP 278 Query: 958 ERLLELVSLKAIDISGLSFLVVDGLKSFAISGLLDNVNSIRQATLGASLTVVFCDSFGPL 1137 ERLLELVSLKAIDIS +S LV+DGLK F D + SIR A +F D Sbjct: 279 ERLLELVSLKAIDISSVSMLVIDGLKCFVDHNASDKIFSIRDAISNNPQITIFTDPSDKK 338 Query: 1138 STSAVQSLLGGPISRLSLSDSIASQSACISQCVHMCTPEE-KPSKGIHVLN---QECGKR 1305 + +SLL G I++LS++DS++S+SA I+Q VH C EE K SK +L Q K+ Sbjct: 339 VAAMAKSLLRGRITKLSINDSVSSRSAFIAQHVHFCPSEELKTSKVKEILEGILQSHPKK 398 Query: 1306 TSSDHHKVLFVEEISSKARSSAAALIAEGYAMSNDT-SDCLEVAYCKETTTVTVTDLEHV 1482 TS KVL V KAR +++L + + +D+ + V V D E++ Sbjct: 399 TS----KVLLVVANDQKARYMSSSLKLKNCTVIDDSHGSSFTICSSLGLMNVIVKDRENM 454 Query: 1483 HNRTDMGEFEIVVVINFPPEIDDYVEILTRMARQSVNGVLHCCFCQEDASLAGPLIDILE 1662 TD EFE V+V++ PP +D+YVEILT +A + G +H FC DAS+A PL ++L Sbjct: 455 -AVTDAEEFETVLVVDLPPSVDEYVEILTGVALHVIGGEVHSIFCNADASIAKPLAELLA 513 Query: 1663 QCEQNVPEFLRSYHNS 1710 C Q VPEF ++ +S Sbjct: 514 DCRQVVPEFFKNLESS 529