BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00007197
         (595 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001050253.1| Os03g0385900 [Oryza sativa Japonica Group] g...   117   2e-24
gb|AAT85310.1| small subunit ribosomal protein, putative [Oryza ...   117   2e-24
dbj|BAA12798.1| mitochondrial ribosomal protein S11 [Oryza sativ...   117   2e-24
ref|NP_001043554.1| Os01g0612100 [Oryza sativa Japonica Group] g...   112   5e-23
ref|YP_005090385.1| ribosomal protein S11 (mitochondrion) [Phoen...   111   8e-23

>ref|NP_001050253.1| Os03g0385900 [Oryza sativa Japonica Group]
           gi|108708513|gb|ABF96308.1| ribosomal protein S11
           containing protein, expressed [Oryza sativa Japonica
           Group] gi|113548724|dbj|BAF12167.1| Os03g0385900 [Oryza
           sativa Japonica Group] gi|215706382|dbj|BAG93238.1|
           unnamed protein product [Oryza sativa Japonica Group]
          Length = 332

 Score =  117 bits (292), Expect = 2e-24
 Identities = 65/144 (45%), Positives = 90/144 (62%), Gaps = 3/144 (2%)
 Frame = +2

Query: 53  FSTSTRLF-QSKWAKIKDVARFPSIL--QSNTFVTVTDSKGNIKTGASIGCLKDFKGKSR 223
           F T +R+F + K + +K    F  +L  ++ TFVTVTD +GN KTGAS GCL+D KG+SR
Sbjct: 191 FGTPSRIFDEHKQSLVKGKRDFVHVLLKRNKTFVTVTDVRGNKKTGASAGCLEDRKGRSR 250

Query: 224 LSKFAAKALAEHVGRSARNLGXXXXXXXXXXXXXXXXXXQAIMSFKDGFTFGESNKRTTE 403
           LSK+AA+A AEHVGR+AR +G                  + I+SF++GF      +   +
Sbjct: 251 LSKYAAEATAEHVGRAARKMGLKSVVMKVKGTTFFNKKKKVILSFREGF---RGERVREQ 307

Query: 404 DGILSIRDVTQIPHNGCRLPKKVR 475
             ++ I DVTQ+PHNGCRLPK+ R
Sbjct: 308 SPVVLIHDVTQLPHNGCRLPKQRR 331


>gb|AAT85310.1| small subunit ribosomal protein, putative [Oryza sativa Japonica
           Group]
          Length = 366

 Score =  117 bits (292), Expect = 2e-24
 Identities = 65/144 (45%), Positives = 90/144 (62%), Gaps = 3/144 (2%)
 Frame = +2

Query: 53  FSTSTRLF-QSKWAKIKDVARFPSIL--QSNTFVTVTDSKGNIKTGASIGCLKDFKGKSR 223
           F T +R+F + K + +K    F  +L  ++ TFVTVTD +GN KTGAS GCL+D KG+SR
Sbjct: 225 FGTPSRIFDEHKQSLVKGKRDFVHVLLKRNKTFVTVTDVRGNKKTGASAGCLEDRKGRSR 284

Query: 224 LSKFAAKALAEHVGRSARNLGXXXXXXXXXXXXXXXXXXQAIMSFKDGFTFGESNKRTTE 403
           LSK+AA+A AEHVGR+AR +G                  + I+SF++GF      +   +
Sbjct: 285 LSKYAAEATAEHVGRAARKMGLKSVVMKVKGTTFFNKKKKVILSFREGF---RGERVREQ 341

Query: 404 DGILSIRDVTQIPHNGCRLPKKVR 475
             ++ I DVTQ+PHNGCRLPK+ R
Sbjct: 342 SPVVLIHDVTQLPHNGCRLPKQRR 365


>dbj|BAA12798.1| mitochondrial ribosomal protein S11 [Oryza sativa Japonica Group]
           gi|125586487|gb|EAZ27151.1| hypothetical protein
           OsJ_11086 [Oryza sativa Japonica Group]
          Length = 254

 Score =  117 bits (292), Expect = 2e-24
 Identities = 65/144 (45%), Positives = 90/144 (62%), Gaps = 3/144 (2%)
 Frame = +2

Query: 53  FSTSTRLF-QSKWAKIKDVARFPSIL--QSNTFVTVTDSKGNIKTGASIGCLKDFKGKSR 223
           F T +R+F + K + +K    F  +L  ++ TFVTVTD +GN KTGAS GCL+D KG+SR
Sbjct: 113 FGTPSRIFDEHKQSLVKGKRDFVHVLLKRNKTFVTVTDVRGNKKTGASAGCLEDRKGRSR 172

Query: 224 LSKFAAKALAEHVGRSARNLGXXXXXXXXXXXXXXXXXXQAIMSFKDGFTFGESNKRTTE 403
           LSK+AA+A AEHVGR+AR +G                  + I+SF++GF      +   +
Sbjct: 173 LSKYAAEATAEHVGRAARKMGLKSVVMKVKGTTFFNKKKKVILSFREGF---RGERVREQ 229

Query: 404 DGILSIRDVTQIPHNGCRLPKKVR 475
             ++ I DVTQ+PHNGCRLPK+ R
Sbjct: 230 SPVVLIHDVTQLPHNGCRLPKQRR 253


>ref|NP_001043554.1| Os01g0612100 [Oryza sativa Japonica Group]
           gi|21104682|dbj|BAB93272.1| putative small subunit
           ribosomal protein [Oryza sativa Japonica Group]
           gi|113533085|dbj|BAF05468.1| Os01g0612100 [Oryza sativa
           Japonica Group]
          Length = 257

 Score =  112 bits (280), Expect = 5e-23
 Identities = 62/142 (43%), Positives = 87/142 (61%), Gaps = 3/142 (2%)
 Frame = +2

Query: 53  FSTSTRLF-QSKWAKIKDVARFPSIL--QSNTFVTVTDSKGNIKTGASIGCLKDFKGKSR 223
           F T + +F + K + +K    F  +L  ++ TFVTVTD +GN KTGAS GCL+D KG+SR
Sbjct: 116 FGTPSHIFDEHKQSLVKGKRDFVYVLLKRNKTFVTVTDVRGNRKTGASAGCLEDKKGRSR 175

Query: 224 LSKFAAKALAEHVGRSARNLGXXXXXXXXXXXXXXXXXXQAIMSFKDGFTFGESNKRTTE 403
           LSK+A +A AEHVGR+AR +G                  + I+SF++GF      +   +
Sbjct: 176 LSKYATEATAEHVGRAARKMGLKSVVMKVKGTVFFNKKKKVILSFREGF---RGERVREQ 232

Query: 404 DGILSIRDVTQIPHNGCRLPKK 469
             ++ I DVTQ+PHNGCRLPK+
Sbjct: 233 SPVVFIHDVTQLPHNGCRLPKQ 254


>ref|YP_005090385.1| ribosomal protein S11 (mitochondrion) [Phoenix dactylifera]
           gi|343478437|gb|AEM43925.1| ribosomal protein S11
           (mitochondrion) [Phoenix dactylifera]
          Length = 171

 Score =  111 bits (278), Expect = 8e-23
 Identities = 59/118 (50%), Positives = 80/118 (67%)
 Frame = +2

Query: 122 ILQSNTFVTVTDSKGNIKTGASIGCLKDFKGKSRLSKFAAKALAEHVGRSARNLGXXXXX 301
           ++++ TFVTVTD++GN KTGAS GCL++ KG+SRLS++AA+A AEHVGRSAR +G     
Sbjct: 27  LIKNKTFVTVTDARGNKKTGASAGCLEERKGRSRLSRYAAEATAEHVGRSARKMGLKSVV 86

Query: 302 XXXXXXXXXXXXXQAIMSFKDGFTFGESNKRTTEDGILSIRDVTQIPHNGCRLPKKVR 475
                        + I+S+++GF  GE      +  I+ I DVTQ+PHNGCRLPKK R
Sbjct: 87  MKVKGSTYFRKKNKVILSWREGFR-GEG--VGDQSPIMYIHDVTQLPHNGCRLPKKRR 141