BLASTX nr result
ID: Coptis24_contig00007057
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00007057
(1563 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003633801.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 655 0.0
ref|XP_002273908.2| PREDICTED: DEAD-box ATP-dependent RNA helica... 655 0.0
ref|XP_002521446.1| dead box ATP-dependent RNA helicase, putativ... 642 0.0
ref|XP_004164821.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 640 0.0
ref|XP_004141097.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP... 635 e-180
>ref|XP_003633801.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 46-like isoform 2
[Vitis vinifera]
Length = 828
Score = 655 bits (1690), Expect = 0.0
Identities = 331/505 (65%), Positives = 387/505 (76%), Gaps = 15/505 (2%)
Frame = -3
Query: 1498 RYAPEDPTLPKPWRGLIDGKTGYLYFWNPTTNVTQYQKPLXXXXXXXXXXXSPEKQPRDT 1319
RYAPEDPTLPKPW+GL+DGKTGYLYFWNP TNVTQY++P P K
Sbjct: 9 RYAPEDPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPERPGASSNASLAPPPKSSASI 68
Query: 1318 SNE------------EDGCNGGGPKSAVTNGLTQQSMRSEVGHFNEVS---ANANPGGSD 1184
S+ + G N K L QQS R H ++ A GGS
Sbjct: 69 SSSVQVQQSSQGQRRDHGLNEEDDKYNRARNL-QQSARGGTVHSHDPPNGIVGAGHGGSS 127
Query: 1183 VHNKMCNGQVXXXXXXXXXXXXXXXXXXXSYRRQHEITVVGNNVPPPFTSFEATGFPPEL 1004
V + +G SYRR+HEITV G++VP PFTSFE+TGFPPE+
Sbjct: 128 VRGQGSSGP-------------GSGASTESYRRRHEITVTGDDVPQPFTSFESTGFPPEI 174
Query: 1003 LRTVHNAGFSSPTPIQAQSWPIALKNHDIVAIAKTGSGKTLGYLLPGFVHLKRCGKNPKM 824
+R V++AGFS+PTPIQAQSWP+AL++ DIVAIAKTGSGKTLGYL+PGF+HLKR NP+M
Sbjct: 175 IREVYSAGFSAPTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRIRNNPQM 234
Query: 823 GPTVLVLSPTRELATQIQDEAEKFGQSSNISCTCLYGGAQKGPQIRDLEKGVDIVVATPG 644
GPTVLVLSPTRELATQIQDEA KFG+SS +SCTCLYGGA KGPQ+RDL++G DIVVATPG
Sbjct: 235 GPTVLVLSPTRELATQIQDEAVKFGRSSRLSCTCLYGGAPKGPQLRDLDRGADIVVATPG 294
Query: 643 RLNDILEMGKISLRQISYFVLDEADRMLDMGFEPQIRKIMKEIPAKRQTLMYTATWPKSV 464
RLNDILEM ++SLRQ+SY VLDEADRMLDMGFEPQIRKI+KE+PA+RQTLMYTATWPK V
Sbjct: 295 RLNDILEMRRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKEV 354
Query: 463 RNIASELLSNPVQVNIGRTDELVANKSISQFVEVVNHADKKRRLQQIMQSQEPRSRILIF 284
R IA++LL NPVQVNIG DELVANK+I+Q+VEV+ + +K +RL+QI++SQEP S+I+IF
Sbjct: 355 RKIAADLLVNPVQVNIGNVDELVANKAITQYVEVLPYMEKHKRLEQILRSQEPGSKIIIF 414
Query: 283 CSTKRMCDQLVEYIPRHLGAAAIHGDKAQGERDYVLNQFRNGSSPILVATDVAARGLDVK 104
CSTK+MCDQL + R GAAAIHGDK+QGERDYVLNQFR G SP+LVATDVAARGLD+K
Sbjct: 415 CSTKKMCDQLARNLTRPFGAAAIHGDKSQGERDYVLNQFRTGRSPVLVATDVAARGLDIK 474
Query: 103 DIRAVINYDFPTGIEDYVHRIGRTG 29
DIR VINYDFPTG+EDYVHRIGRTG
Sbjct: 475 DIRVVINYDFPTGVEDYVHRIGRTG 499
>ref|XP_002273908.2| PREDICTED: DEAD-box ATP-dependent RNA helicase 46-like isoform 1
[Vitis vinifera]
Length = 863
Score = 655 bits (1690), Expect = 0.0
Identities = 331/505 (65%), Positives = 387/505 (76%), Gaps = 15/505 (2%)
Frame = -3
Query: 1498 RYAPEDPTLPKPWRGLIDGKTGYLYFWNPTTNVTQYQKPLXXXXXXXXXXXSPEKQPRDT 1319
RYAPEDPTLPKPW+GL+DGKTGYLYFWNP TNVTQY++P P K
Sbjct: 9 RYAPEDPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPERPGASSNASLAPPPKSSASI 68
Query: 1318 SNE------------EDGCNGGGPKSAVTNGLTQQSMRSEVGHFNEVS---ANANPGGSD 1184
S+ + G N K L QQS R H ++ A GGS
Sbjct: 69 SSSVQVQQSSQGQRRDHGLNEEDDKYNRARNL-QQSARGGTVHSHDPPNGIVGAGHGGSS 127
Query: 1183 VHNKMCNGQVXXXXXXXXXXXXXXXXXXXSYRRQHEITVVGNNVPPPFTSFEATGFPPEL 1004
V + +G SYRR+HEITV G++VP PFTSFE+TGFPPE+
Sbjct: 128 VRGQGSSGP-------------GSGASTESYRRRHEITVTGDDVPQPFTSFESTGFPPEI 174
Query: 1003 LRTVHNAGFSSPTPIQAQSWPIALKNHDIVAIAKTGSGKTLGYLLPGFVHLKRCGKNPKM 824
+R V++AGFS+PTPIQAQSWP+AL++ DIVAIAKTGSGKTLGYL+PGF+HLKR NP+M
Sbjct: 175 IREVYSAGFSAPTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRIRNNPQM 234
Query: 823 GPTVLVLSPTRELATQIQDEAEKFGQSSNISCTCLYGGAQKGPQIRDLEKGVDIVVATPG 644
GPTVLVLSPTRELATQIQDEA KFG+SS +SCTCLYGGA KGPQ+RDL++G DIVVATPG
Sbjct: 235 GPTVLVLSPTRELATQIQDEAVKFGRSSRLSCTCLYGGAPKGPQLRDLDRGADIVVATPG 294
Query: 643 RLNDILEMGKISLRQISYFVLDEADRMLDMGFEPQIRKIMKEIPAKRQTLMYTATWPKSV 464
RLNDILEM ++SLRQ+SY VLDEADRMLDMGFEPQIRKI+KE+PA+RQTLMYTATWPK V
Sbjct: 295 RLNDILEMRRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKEV 354
Query: 463 RNIASELLSNPVQVNIGRTDELVANKSISQFVEVVNHADKKRRLQQIMQSQEPRSRILIF 284
R IA++LL NPVQVNIG DELVANK+I+Q+VEV+ + +K +RL+QI++SQEP S+I+IF
Sbjct: 355 RKIAADLLVNPVQVNIGNVDELVANKAITQYVEVLPYMEKHKRLEQILRSQEPGSKIIIF 414
Query: 283 CSTKRMCDQLVEYIPRHLGAAAIHGDKAQGERDYVLNQFRNGSSPILVATDVAARGLDVK 104
CSTK+MCDQL + R GAAAIHGDK+QGERDYVLNQFR G SP+LVATDVAARGLD+K
Sbjct: 415 CSTKKMCDQLARNLTRPFGAAAIHGDKSQGERDYVLNQFRTGRSPVLVATDVAARGLDIK 474
Query: 103 DIRAVINYDFPTGIEDYVHRIGRTG 29
DIR VINYDFPTG+EDYVHRIGRTG
Sbjct: 475 DIRVVINYDFPTGVEDYVHRIGRTG 499
>ref|XP_002521446.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223539345|gb|EEF40936.1| dead box ATP-dependent RNA
helicase, putative [Ricinus communis]
Length = 781
Score = 642 bits (1655), Expect = 0.0
Identities = 322/493 (65%), Positives = 380/493 (77%), Gaps = 3/493 (0%)
Frame = -3
Query: 1498 RYAPEDPTLPKPWRGLIDGKTGYLYFWNPTTNVTQYQKPLXXXXXXXXXXXSPEKQPRDT 1319
RYAPEDPTLPKPWRGL+DGKTGYLYFWNP TNVTQY++P+ +
Sbjct: 10 RYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPIATALPSKSSLVPISSSVQVQ 69
Query: 1318 SNEEDGCNGGGPKSAVTNGLTQQSMRSEVGHFNEVSANANPGG---SDVHNKMCNGQVXX 1148
+ G + + G S +FN+ NA GG +V N NG
Sbjct: 70 QSSRRGYSPVKEEDRYGRGNGSGSKPDAGTNFNQ---NAKGGGFQSQNVPNGTANGPGGP 126
Query: 1147 XXXXXXXXXXXXXXXXXSYRRQHEITVVGNNVPPPFTSFEATGFPPELLRTVHNAGFSSP 968
+YRR+HEI+V G++VPPP T+FEATGFP E+LR V +AGFS P
Sbjct: 127 SARGHGSSAGGSILSPEAYRRRHEISVTGDDVPPPLTTFEATGFPSEILREVLSAGFSVP 186
Query: 967 TPIQAQSWPIALKNHDIVAIAKTGSGKTLGYLLPGFVHLKRCGKNPKMGPTVLVLSPTRE 788
TPIQAQSWPIAL++ DIVAIAKTGSGKTLGYLLPGF+HLKRC +P++GPTVLVLSPTRE
Sbjct: 187 TPIQAQSWPIALQSKDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPQLGPTVLVLSPTRE 246
Query: 787 LATQIQDEAEKFGQSSNISCTCLYGGAQKGPQIRDLEKGVDIVVATPGRLNDILEMGKIS 608
LATQIQDEA KFG+SS ISCTCLYGGA KGPQ+++L++GVDIVVATPGRLNDILEM +IS
Sbjct: 247 LATQIQDEAVKFGRSSRISCTCLYGGAPKGPQLKELDRGVDIVVATPGRLNDILEMRRIS 306
Query: 607 LRQISYFVLDEADRMLDMGFEPQIRKIMKEIPAKRQTLMYTATWPKSVRNIASELLSNPV 428
L Q+SY VLDEADRMLDMGFEPQIRKI+KE+P++RQTLMYTATWP+ VR IA++LL NPV
Sbjct: 307 LSQVSYLVLDEADRMLDMGFEPQIRKIVKEVPSRRQTLMYTATWPREVRKIAADLLVNPV 366
Query: 427 QVNIGRTDELVANKSISQFVEVVNHADKKRRLQQIMQSQEPRSRILIFCSTKRMCDQLVE 248
QVNIG DELVANKSI+Q++EV+ +K RRL+QI++SQEP S+I+IFCSTK+MCDQL
Sbjct: 367 QVNIGNVDELVANKSITQYIEVLAPMEKHRRLEQILRSQEPGSKIIIFCSTKKMCDQLAR 426
Query: 247 YIPRHLGAAAIHGDKAQGERDYVLNQFRNGSSPILVATDVAARGLDVKDIRAVINYDFPT 68
+ R GAAAIHGDK+Q ERD+VL+QFR G SP+LVATDVAARGLD+KDIR VINYDFPT
Sbjct: 427 NLTRTFGAAAIHGDKSQSERDHVLSQFRTGRSPVLVATDVAARGLDIKDIRVVINYDFPT 486
Query: 67 GIEDYVHRIGRTG 29
G+EDYVHRIGRTG
Sbjct: 487 GVEDYVHRIGRTG 499
>ref|XP_004164821.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 46-like [Cucumis
sativus]
Length = 778
Score = 640 bits (1651), Expect = 0.0
Identities = 326/505 (64%), Positives = 383/505 (75%), Gaps = 15/505 (2%)
Frame = -3
Query: 1498 RYAPEDPTLPKPWRGLIDGKTGYLYFWNPTTNVTQYQKPLXXXXXXXXXXXSPE----KQ 1331
RYAPEDPTLPKPWRGL+DGKTGYLYFWNP TNVTQY++P+ ++
Sbjct: 13 RYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSSIVSISSSVQIQK 72
Query: 1330 PR---------DTSNEEDGCNGGGPKSAVTNGLTQQSMRSEVGHFNEVSANANPGGSDV- 1181
P + +N++ G PK V G T QS + G + N GG+ +
Sbjct: 73 PSSGHSYNNNLNENNDKYGRGSHAPKQEVARGETFQSHDTSNG-----TPNTGHGGAPLK 127
Query: 1180 -HNKMCNGQVXXXXXXXXXXXXXXXXXXXSYRRQHEITVVGNNVPPPFTSFEATGFPPEL 1004
H G SYR++HEIT G+NVP PF+SFEATGFPPE+
Sbjct: 128 GHRPSDAGN---------------GISAESYRQRHEITFSGDNVPAPFSSFEATGFPPEI 172
Query: 1003 LRTVHNAGFSSPTPIQAQSWPIALKNHDIVAIAKTGSGKTLGYLLPGFVHLKRCGKNPKM 824
LR VHNAGFS+PTPIQAQSWPIAL++ DIVAIAKTGSGKTLGYL+PGF+HLKR +PK+
Sbjct: 173 LREVHNAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRIRNDPKL 232
Query: 823 GPTVLVLSPTRELATQIQDEAEKFGQSSNISCTCLYGGAQKGPQIRDLEKGVDIVVATPG 644
GPTVLVLSPTRELATQIQDEA KFG+SS ISC CLYGGA KG Q+RD+++GVDIVVATPG
Sbjct: 233 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCACLYGGAPKGLQLRDIDRGVDIVVATPG 292
Query: 643 RLNDILEMGKISLRQISYFVLDEADRMLDMGFEPQIRKIMKEIPAKRQTLMYTATWPKSV 464
RLNDILEM +ISL Q+SY VLDEADRMLDMGFEPQIRKI+KE+PA+RQTLMYTATWPK V
Sbjct: 293 RLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKEV 352
Query: 463 RNIASELLSNPVQVNIGRTDELVANKSISQFVEVVNHADKKRRLQQIMQSQEPRSRILIF 284
R IAS+LL NP+QVNIG DELVANKSI+Q +E + +K RRL+QI++SQEP S+++IF
Sbjct: 353 RKIASDLLVNPIQVNIGNVDELVANKSITQHIEALAPLEKHRRLEQILRSQEPGSKVIIF 412
Query: 283 CSTKRMCDQLVEYIPRHLGAAAIHGDKAQGERDYVLNQFRNGSSPILVATDVAARGLDVK 104
CSTK+MCDQL + R GAAAIHGDK+QGERD+VL QFR G +P+LVATDVAARGLD+K
Sbjct: 413 CSTKKMCDQLARNLTRQFGAAAIHGDKSQGERDHVLGQFRTGRTPVLVATDVAARGLDIK 472
Query: 103 DIRAVINYDFPTGIEDYVHRIGRTG 29
DIR VINYDFP+G+EDYVHRIGRTG
Sbjct: 473 DIRVVINYDFPSGVEDYVHRIGRTG 497
>ref|XP_004141097.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
46-like [Cucumis sativus]
Length = 785
Score = 635 bits (1638), Expect = e-180
Identities = 320/492 (65%), Positives = 374/492 (76%), Gaps = 2/492 (0%)
Frame = -3
Query: 1498 RYAPEDPTLPKPWRGLIDGKTGYLYFWNPTTNVTQYQKPLXXXXXXXXXXXSPEKQPRDT 1319
RYAPEDPTLPKPWRGL+DGKTGYLYFWNP TNVTQY++P+
Sbjct: 13 RYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSSIVSISSSVQIQK 72
Query: 1318 SNEEDGCNGGGPKSAVTNGLTQQSMRSEVGHFNEVSANANPGGS-DVHNKMCN-GQVXXX 1145
+ N ++ G + + EV ++ A S D N N G
Sbjct: 73 PSSGHSYNNNLNENNDKYGRGSHAPKQEVEXKIQIVARGETFQSHDTSNGTPNTGHGGAP 132
Query: 1144 XXXXXXXXXXXXXXXXSYRRQHEITVVGNNVPPPFTSFEATGFPPELLRTVHNAGFSSPT 965
SYR++HEIT G+NVP PF+SFEATGFPPE+LR VHNAGFS+PT
Sbjct: 133 LKGHRPSDAGNGISAESYRQRHEITFSGDNVPAPFSSFEATGFPPEILREVHNAGFSAPT 192
Query: 964 PIQAQSWPIALKNHDIVAIAKTGSGKTLGYLLPGFVHLKRCGKNPKMGPTVLVLSPTREL 785
PIQAQSWPIAL++ DIVAIAKTGSGKTLGYL+PGF+HLKR +PK+GPTVLVLSPTREL
Sbjct: 193 PIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRIRNDPKLGPTVLVLSPTREL 252
Query: 784 ATQIQDEAEKFGQSSNISCTCLYGGAQKGPQIRDLEKGVDIVVATPGRLNDILEMGKISL 605
ATQIQDEA KFG+SS ISC CLYGGA KG Q+RD+++GVDIVVATPGRLNDILEM +ISL
Sbjct: 253 ATQIQDEAVKFGKSSRISCACLYGGAPKGLQLRDIDRGVDIVVATPGRLNDILEMRRISL 312
Query: 604 RQISYFVLDEADRMLDMGFEPQIRKIMKEIPAKRQTLMYTATWPKSVRNIASELLSNPVQ 425
Q+SY VLDEADRMLDMGFEPQIRKI+KE+PA+RQTLMYTATWPK VR IAS+LL NP+Q
Sbjct: 313 HQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKEVRKIASDLLVNPIQ 372
Query: 424 VNIGRTDELVANKSISQFVEVVNHADKKRRLQQIMQSQEPRSRILIFCSTKRMCDQLVEY 245
VNIG DELVANKSI+Q +E + +K RRL+QI++SQEP S+++IFCSTK+MCDQL
Sbjct: 373 VNIGNVDELVANKSITQHIEALAPLEKHRRLEQILRSQEPGSKVIIFCSTKKMCDQLARN 432
Query: 244 IPRHLGAAAIHGDKAQGERDYVLNQFRNGSSPILVATDVAARGLDVKDIRAVINYDFPTG 65
+ R GAAAIHGDK+QGERD+VL QFR G +P+LVATDVAARGLD+KDIR VINYDFP+G
Sbjct: 433 LTRQFGAAAIHGDKSQGERDHVLGQFRTGRTPVLVATDVAARGLDIKDIRVVINYDFPSG 492
Query: 64 IEDYVHRIGRTG 29
+EDYVHRIGRTG
Sbjct: 493 VEDYVHRIGRTG 504