BLASTX nr result

ID: Coptis24_contig00007036 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00007036
         (1487 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284034.1| PREDICTED: nucleoporin NUP53 [Vitis vinifera...   367   4e-99
ref|XP_002515985.1| Nucleoporin NUP53, putative [Ricinus communi...   363   5e-98
ref|XP_003543628.1| PREDICTED: nucleoporin NUP53-like [Glycine max]   355   2e-95
ref|XP_002299732.1| predicted protein [Populus trichocarpa] gi|2...   353   5e-95
ref|NP_001240960.1| uncharacterized protein LOC100783752 [Glycin...   352   2e-94

>ref|XP_002284034.1| PREDICTED: nucleoporin NUP53 [Vitis vinifera]
            gi|297743215|emb|CBI36082.3| unnamed protein product
            [Vitis vinifera]
          Length = 317

 Score =  367 bits (942), Expect = 4e-99
 Identities = 198/315 (62%), Positives = 229/315 (72%), Gaps = 16/315 (5%)
 Frame = -1

Query: 1316 FFQDLATPISTHRGKFTSPGQAAAVSALWRENFGGTDPPPPPVFTLEDRVDFSPE--LVD 1143
            FFQDLA+P+S+ RGKFTS GQAAAVSALW +NF G+D PPPP++TLEDR DFSPE  ++D
Sbjct: 17   FFQDLASPVSSRRGKFTSSGQAAAVSALWHDNFAGSDLPPPPMYTLEDRSDFSPESGILD 76

Query: 1142 YP-------DFKTPV------LATPLKSRFDAXXXXXXXXSGGPNVKESAGWWGSGNGNE 1002
            YP       D +TPV        TP+K + +A                S  WW       
Sbjct: 77   YPVSPEIKSDLRTPVHGSGRDFLTPVKGKSEASTS-----------SASLSWWSPAKSGG 125

Query: 1001 STEERGGKGSPVNGVVNSASLITLPPVREVVRPDVQRSSFPVGDLDEEEWVTVYGFSPGD 822
              EE+G KGSPV GVV   +LITLPP REV RP++QR+  P G+LDEEEWVTVYGFSPGD
Sbjct: 126  DQEEKG-KGSPVEGVVQPGALITLPPPREVARPEMQRNCLPAGNLDEEEWVTVYGFSPGD 184

Query: 821  TNLVLREFEKCGTILKHVPGPRTANWMHILYQSRFDAHKALSKSGMQINGVLIVGVKLLD 642
            TNLVLREFEKCG ILKHVPGPR ANW+HILYQ+R DA KALSK+GMQINGVLIVGVK LD
Sbjct: 185  TNLVLREFEKCGVILKHVPGPRDANWIHILYQNRSDAQKALSKNGMQINGVLIVGVKPLD 244

Query: 641  PFQRQALSEAPNGNQGFMTL-PPASSRTTELIPSKLSPRPYHLXXXXXXXQHSAGVIASP 465
            P QRQAL+E  N NQGFMTL PPASSR+ E  P ++SPRPY+L       + S+G IASP
Sbjct: 245  PMQRQALNERLN-NQGFMTLPPPASSRSLESNPLRVSPRPYYL-QNGSNARQSSGAIASP 302

Query: 464  AKSVVSKIVDLMFGI 420
            AKSVVSKI+DLMFG+
Sbjct: 303  AKSVVSKIMDLMFGV 317


>ref|XP_002515985.1| Nucleoporin NUP53, putative [Ricinus communis]
            gi|223544890|gb|EEF46405.1| Nucleoporin NUP53, putative
            [Ricinus communis]
          Length = 332

 Score =  363 bits (933), Expect = 5e-98
 Identities = 197/317 (62%), Positives = 227/317 (71%), Gaps = 18/317 (5%)
 Frame = -1

Query: 1316 FFQDLATPISTHRGKFTSPGQAAAVSALWRENFGGTDPPPPPVFTLEDRVDFSPE--LVD 1143
            F+QDLA+P+S  +GKF +PGQAAAVSALWRENFGG+D PPPP++TLEDR DFSPE  + D
Sbjct: 18   FYQDLASPVSARKGKFATPGQAAAVSALWRENFGGSDLPPPPMYTLEDRSDFSPESGIPD 77

Query: 1142 YP-------DFKTP------VLATPLKSRFDAXXXXXXXXSGGPNVKESAG--WWGSGNG 1008
            YP       D ++P          P KS+ DA         G  N + SA   WW     
Sbjct: 78   YPVSPEVKSDPRSPRQISGREFMIPSKSKSDASTSFALMN-GHQNQQGSASSTWWSPAKA 136

Query: 1007 NESTEERGGKGSPVNGVVNSASLITLPPVREVVRPDVQRSSFPVGDLDEEEWVTVYGFSP 828
            + S +E  GKGSPV GVV   +LI LPP+REV RP++QR++ P G  DEEEWVTVYGFSP
Sbjct: 137  SSSEQEDKGKGSPVEGVVQPGALIILPPLREVARPEMQRNNLPTGKFDEEEWVTVYGFSP 196

Query: 827  GDTNLVLREFEKCGTILKHVPGPRTANWMHILYQSRFDAHKALSKSGMQINGVLIVGVKL 648
            GDTNLVLREFEKCG ILKHVPGPR ANWMHILYQSR DA KALSK+GMQINGVLIVGVK 
Sbjct: 197  GDTNLVLREFEKCGVILKHVPGPRDANWMHILYQSRSDAQKALSKNGMQINGVLIVGVKP 256

Query: 647  LDPFQRQALSEAPNGNQGFMTL-PPASSRTTELIPSKLSPRPYHLXXXXXXXQHSAGVIA 471
            +DP QRQAL+E  N NQGFMTL PP+SSR++EL     S RPYH+       + S G IA
Sbjct: 257  VDPMQRQALNERLN-NQGFMTLPPPSSSRSSELKTLGASSRPYHIQNGSSSARQSGGSIA 315

Query: 470  SPAKSVVSKIVDLMFGI 420
            SPAKSVVSKI D+MFGI
Sbjct: 316  SPAKSVVSKIFDVMFGI 332


>ref|XP_003543628.1| PREDICTED: nucleoporin NUP53-like [Glycine max]
          Length = 331

 Score =  355 bits (910), Expect = 2e-95
 Identities = 191/317 (60%), Positives = 226/317 (71%), Gaps = 18/317 (5%)
 Frame = -1

Query: 1316 FFQDLATPISTHRGKFTSPGQAAAVSALWRENFGGTDPPPPPVFTLEDRVDFSPE--LVD 1143
            FFQDLA+P+S  RGKF+SPGQAAAVS+LWRENFG +D PPPPVFTLEDR DFSPE  ++D
Sbjct: 17   FFQDLASPVSARRGKFSSPGQAAAVSSLWRENFGSSDLPPPPVFTLEDRSDFSPESGILD 76

Query: 1142 YP-------DFKTPV------LATPLKSRFDAXXXXXXXXSGGPNVKESAG--WWGSGNG 1008
            Y        D +TP+       +TPLKS+ +A            N + S G  WW     
Sbjct: 77   YQISPEAKSDTRTPIQTSNKEFSTPLKSKSEASTSYALRGVQ-QNQQGSPGLSWWSPTTA 135

Query: 1007 NESTEE-RGGKGSPVNGVVNSASLITLPPVREVVRPDVQRSSFPVGDLDEEEWVTVYGFS 831
                E+   G+ SPV GVV   +LITLPP  EV RP+VQR+S P G+L+EEEWVTVYGFS
Sbjct: 136  KSVGEQDEKGRSSPVEGVVQPGALITLPPPLEVARPEVQRNSLPAGNLNEEEWVTVYGFS 195

Query: 830  PGDTNLVLREFEKCGTILKHVPGPRTANWMHILYQSRFDAHKALSKSGMQINGVLIVGVK 651
            PGDTN+VLREFEKCG ILKHVPGPR ANW+HILYQ+R DAHKAL+K+GMQINGVLIVGVK
Sbjct: 196  PGDTNMVLREFEKCGEILKHVPGPRDANWVHILYQNRSDAHKALNKNGMQINGVLIVGVK 255

Query: 650  LLDPFQRQALSEAPNGNQGFMTLPPASSRTTELIPSKLSPRPYHLXXXXXXXQHSAGVIA 471
            LLDP QRQAL+E    NQGFM LP AS+R +E+   K   RPY+L       + + G IA
Sbjct: 256  LLDPMQRQALNERLK-NQGFMPLPLASARNSEVSTLKAPSRPYYLQNGNSTARQTGGTIA 314

Query: 470  SPAKSVVSKIVDLMFGI 420
            SP KS+VSKI+DLMFG+
Sbjct: 315  SPTKSLVSKIMDLMFGV 331


>ref|XP_002299732.1| predicted protein [Populus trichocarpa] gi|222846990|gb|EEE84537.1|
            predicted protein [Populus trichocarpa]
          Length = 329

 Score =  353 bits (907), Expect = 5e-95
 Identities = 188/317 (59%), Positives = 222/317 (70%), Gaps = 18/317 (5%)
 Frame = -1

Query: 1316 FFQDLATPISTHRGKFTSPGQAAAVSALWRENFGGTDPPPPPVFTLEDRVDFSPE--LVD 1143
            FFQDLA+P+S  +GKF++P QAAAVSALWR+NFGG+D PPPP +TLEDR + SPE  + D
Sbjct: 14   FFQDLASPVSAGKGKFSTPAQAAAVSALWRDNFGGSDLPPPPFYTLEDRSEISPESGIPD 73

Query: 1142 YP---DFKTPVLATPLKS---------RFDAXXXXXXXXSGGPNVKESAG---WWGSGNG 1008
            YP   D K+    +P +S         +  +          G N ++ +    WW     
Sbjct: 74   YPLSPDIKSHPTTSPFQSSGREFGTPPKTKSEATTSFALISGQNTQQGSPISTWWSPSKA 133

Query: 1007 NESTEERGGKGSPVNGVVNSASLITLPPVREVVRPDVQRSSFPVGDLDEEEWVTVYGFSP 828
              S  E  GKGSPV GVV   +LITLPP REV RP+  R+  P G+LDEEEWVTVYGF+P
Sbjct: 134  RSSEHEDKGKGSPVEGVVQPGALITLPPPREVARPEKHRNCVPAGNLDEEEWVTVYGFAP 193

Query: 827  GDTNLVLREFEKCGTILKHVPGPRTANWMHILYQSRFDAHKALSKSGMQINGVLIVGVKL 648
            GDTNLVLREFEKCG ILKHVPGPR ANWMHILYQSR DA KALSK+GMQINGVLI+GVKL
Sbjct: 194  GDTNLVLREFEKCGVILKHVPGPREANWMHILYQSRADAQKALSKNGMQINGVLIIGVKL 253

Query: 647  LDPFQRQALSEAPNGNQGFMTLPPASS-RTTELIPSKLSPRPYHLXXXXXXXQHSAGVIA 471
            +DP QRQAL+E  N NQGFMTLPP SS RT +    + SPRP++L       + S GVIA
Sbjct: 254  VDPMQRQALNERIN-NQGFMTLPPPSSTRTPDSNALRASPRPHYLQNGSTSARQSGGVIA 312

Query: 470  SPAKSVVSKIVDLMFGI 420
            SPAKS+VSKI D+MFGI
Sbjct: 313  SPAKSMVSKIFDVMFGI 329


>ref|NP_001240960.1| uncharacterized protein LOC100783752 [Glycine max]
            gi|255639315|gb|ACU19955.1| unknown [Glycine max]
          Length = 331

 Score =  352 bits (902), Expect = 2e-94
 Identities = 189/317 (59%), Positives = 224/317 (70%), Gaps = 18/317 (5%)
 Frame = -1

Query: 1316 FFQDLATPISTHRGKFTSPGQAAAVSALWRENFGGTDPPPPPVFTLEDRVDFSPE--LVD 1143
            FFQDLA+P+S  RGKF+SP QAAAVS+LWRENFG +D PPPPVFTLEDR DFSPE  ++D
Sbjct: 17   FFQDLASPVSARRGKFSSPSQAAAVSSLWRENFGSSDLPPPPVFTLEDRSDFSPESGILD 76

Query: 1142 YP-------DFKTPV------LATPLKSRFDAXXXXXXXXSGGPNVKESAG--WWGSGNG 1008
            Y        D +TP+       +TP+KS+ +A            N + S G  WW     
Sbjct: 77   YQISPETKSDTRTPIQTSNKEFSTPVKSKSEASTSYALRGVQ-QNQQGSPGLSWWSPTTA 135

Query: 1007 NESTEE-RGGKGSPVNGVVNSASLITLPPVREVVRPDVQRSSFPVGDLDEEEWVTVYGFS 831
                E+   G+ SPV GVV   +LITLPP  EV RP+VQR+S P G+L+EEEWVTVYGFS
Sbjct: 136  KSGGEQDERGRSSPVEGVVQPGALITLPPPLEVARPEVQRNSLPAGNLNEEEWVTVYGFS 195

Query: 830  PGDTNLVLREFEKCGTILKHVPGPRTANWMHILYQSRFDAHKALSKSGMQINGVLIVGVK 651
            PGDTN+VLREFEKCG ILKHVPGPR ANWMHILYQ+R DAHKAL+K+GMQINGVLIVGVK
Sbjct: 196  PGDTNMVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHKALNKNGMQINGVLIVGVK 255

Query: 650  LLDPFQRQALSEAPNGNQGFMTLPPASSRTTELIPSKLSPRPYHLXXXXXXXQHSAGVIA 471
            LLDP QRQAL+E    NQGFM LP  S+R +E+   K   RPY+L       + + G IA
Sbjct: 256  LLDPMQRQALNERLK-NQGFMPLPLPSARNSEVSSLKAPSRPYYLQNGNSTARQTGGTIA 314

Query: 470  SPAKSVVSKIVDLMFGI 420
            SP KS+VSKI+DLMFG+
Sbjct: 315  SPTKSLVSKIMDLMFGV 331


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