BLASTX nr result
ID: Coptis24_contig00007036
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00007036
(1487 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002284034.1| PREDICTED: nucleoporin NUP53 [Vitis vinifera... 367 4e-99
ref|XP_002515985.1| Nucleoporin NUP53, putative [Ricinus communi... 363 5e-98
ref|XP_003543628.1| PREDICTED: nucleoporin NUP53-like [Glycine max] 355 2e-95
ref|XP_002299732.1| predicted protein [Populus trichocarpa] gi|2... 353 5e-95
ref|NP_001240960.1| uncharacterized protein LOC100783752 [Glycin... 352 2e-94
>ref|XP_002284034.1| PREDICTED: nucleoporin NUP53 [Vitis vinifera]
gi|297743215|emb|CBI36082.3| unnamed protein product
[Vitis vinifera]
Length = 317
Score = 367 bits (942), Expect = 4e-99
Identities = 198/315 (62%), Positives = 229/315 (72%), Gaps = 16/315 (5%)
Frame = -1
Query: 1316 FFQDLATPISTHRGKFTSPGQAAAVSALWRENFGGTDPPPPPVFTLEDRVDFSPE--LVD 1143
FFQDLA+P+S+ RGKFTS GQAAAVSALW +NF G+D PPPP++TLEDR DFSPE ++D
Sbjct: 17 FFQDLASPVSSRRGKFTSSGQAAAVSALWHDNFAGSDLPPPPMYTLEDRSDFSPESGILD 76
Query: 1142 YP-------DFKTPV------LATPLKSRFDAXXXXXXXXSGGPNVKESAGWWGSGNGNE 1002
YP D +TPV TP+K + +A S WW
Sbjct: 77 YPVSPEIKSDLRTPVHGSGRDFLTPVKGKSEASTS-----------SASLSWWSPAKSGG 125
Query: 1001 STEERGGKGSPVNGVVNSASLITLPPVREVVRPDVQRSSFPVGDLDEEEWVTVYGFSPGD 822
EE+G KGSPV GVV +LITLPP REV RP++QR+ P G+LDEEEWVTVYGFSPGD
Sbjct: 126 DQEEKG-KGSPVEGVVQPGALITLPPPREVARPEMQRNCLPAGNLDEEEWVTVYGFSPGD 184
Query: 821 TNLVLREFEKCGTILKHVPGPRTANWMHILYQSRFDAHKALSKSGMQINGVLIVGVKLLD 642
TNLVLREFEKCG ILKHVPGPR ANW+HILYQ+R DA KALSK+GMQINGVLIVGVK LD
Sbjct: 185 TNLVLREFEKCGVILKHVPGPRDANWIHILYQNRSDAQKALSKNGMQINGVLIVGVKPLD 244
Query: 641 PFQRQALSEAPNGNQGFMTL-PPASSRTTELIPSKLSPRPYHLXXXXXXXQHSAGVIASP 465
P QRQAL+E N NQGFMTL PPASSR+ E P ++SPRPY+L + S+G IASP
Sbjct: 245 PMQRQALNERLN-NQGFMTLPPPASSRSLESNPLRVSPRPYYL-QNGSNARQSSGAIASP 302
Query: 464 AKSVVSKIVDLMFGI 420
AKSVVSKI+DLMFG+
Sbjct: 303 AKSVVSKIMDLMFGV 317
>ref|XP_002515985.1| Nucleoporin NUP53, putative [Ricinus communis]
gi|223544890|gb|EEF46405.1| Nucleoporin NUP53, putative
[Ricinus communis]
Length = 332
Score = 363 bits (933), Expect = 5e-98
Identities = 197/317 (62%), Positives = 227/317 (71%), Gaps = 18/317 (5%)
Frame = -1
Query: 1316 FFQDLATPISTHRGKFTSPGQAAAVSALWRENFGGTDPPPPPVFTLEDRVDFSPE--LVD 1143
F+QDLA+P+S +GKF +PGQAAAVSALWRENFGG+D PPPP++TLEDR DFSPE + D
Sbjct: 18 FYQDLASPVSARKGKFATPGQAAAVSALWRENFGGSDLPPPPMYTLEDRSDFSPESGIPD 77
Query: 1142 YP-------DFKTP------VLATPLKSRFDAXXXXXXXXSGGPNVKESAG--WWGSGNG 1008
YP D ++P P KS+ DA G N + SA WW
Sbjct: 78 YPVSPEVKSDPRSPRQISGREFMIPSKSKSDASTSFALMN-GHQNQQGSASSTWWSPAKA 136
Query: 1007 NESTEERGGKGSPVNGVVNSASLITLPPVREVVRPDVQRSSFPVGDLDEEEWVTVYGFSP 828
+ S +E GKGSPV GVV +LI LPP+REV RP++QR++ P G DEEEWVTVYGFSP
Sbjct: 137 SSSEQEDKGKGSPVEGVVQPGALIILPPLREVARPEMQRNNLPTGKFDEEEWVTVYGFSP 196
Query: 827 GDTNLVLREFEKCGTILKHVPGPRTANWMHILYQSRFDAHKALSKSGMQINGVLIVGVKL 648
GDTNLVLREFEKCG ILKHVPGPR ANWMHILYQSR DA KALSK+GMQINGVLIVGVK
Sbjct: 197 GDTNLVLREFEKCGVILKHVPGPRDANWMHILYQSRSDAQKALSKNGMQINGVLIVGVKP 256
Query: 647 LDPFQRQALSEAPNGNQGFMTL-PPASSRTTELIPSKLSPRPYHLXXXXXXXQHSAGVIA 471
+DP QRQAL+E N NQGFMTL PP+SSR++EL S RPYH+ + S G IA
Sbjct: 257 VDPMQRQALNERLN-NQGFMTLPPPSSSRSSELKTLGASSRPYHIQNGSSSARQSGGSIA 315
Query: 470 SPAKSVVSKIVDLMFGI 420
SPAKSVVSKI D+MFGI
Sbjct: 316 SPAKSVVSKIFDVMFGI 332
>ref|XP_003543628.1| PREDICTED: nucleoporin NUP53-like [Glycine max]
Length = 331
Score = 355 bits (910), Expect = 2e-95
Identities = 191/317 (60%), Positives = 226/317 (71%), Gaps = 18/317 (5%)
Frame = -1
Query: 1316 FFQDLATPISTHRGKFTSPGQAAAVSALWRENFGGTDPPPPPVFTLEDRVDFSPE--LVD 1143
FFQDLA+P+S RGKF+SPGQAAAVS+LWRENFG +D PPPPVFTLEDR DFSPE ++D
Sbjct: 17 FFQDLASPVSARRGKFSSPGQAAAVSSLWRENFGSSDLPPPPVFTLEDRSDFSPESGILD 76
Query: 1142 YP-------DFKTPV------LATPLKSRFDAXXXXXXXXSGGPNVKESAG--WWGSGNG 1008
Y D +TP+ +TPLKS+ +A N + S G WW
Sbjct: 77 YQISPEAKSDTRTPIQTSNKEFSTPLKSKSEASTSYALRGVQ-QNQQGSPGLSWWSPTTA 135
Query: 1007 NESTEE-RGGKGSPVNGVVNSASLITLPPVREVVRPDVQRSSFPVGDLDEEEWVTVYGFS 831
E+ G+ SPV GVV +LITLPP EV RP+VQR+S P G+L+EEEWVTVYGFS
Sbjct: 136 KSVGEQDEKGRSSPVEGVVQPGALITLPPPLEVARPEVQRNSLPAGNLNEEEWVTVYGFS 195
Query: 830 PGDTNLVLREFEKCGTILKHVPGPRTANWMHILYQSRFDAHKALSKSGMQINGVLIVGVK 651
PGDTN+VLREFEKCG ILKHVPGPR ANW+HILYQ+R DAHKAL+K+GMQINGVLIVGVK
Sbjct: 196 PGDTNMVLREFEKCGEILKHVPGPRDANWVHILYQNRSDAHKALNKNGMQINGVLIVGVK 255
Query: 650 LLDPFQRQALSEAPNGNQGFMTLPPASSRTTELIPSKLSPRPYHLXXXXXXXQHSAGVIA 471
LLDP QRQAL+E NQGFM LP AS+R +E+ K RPY+L + + G IA
Sbjct: 256 LLDPMQRQALNERLK-NQGFMPLPLASARNSEVSTLKAPSRPYYLQNGNSTARQTGGTIA 314
Query: 470 SPAKSVVSKIVDLMFGI 420
SP KS+VSKI+DLMFG+
Sbjct: 315 SPTKSLVSKIMDLMFGV 331
>ref|XP_002299732.1| predicted protein [Populus trichocarpa] gi|222846990|gb|EEE84537.1|
predicted protein [Populus trichocarpa]
Length = 329
Score = 353 bits (907), Expect = 5e-95
Identities = 188/317 (59%), Positives = 222/317 (70%), Gaps = 18/317 (5%)
Frame = -1
Query: 1316 FFQDLATPISTHRGKFTSPGQAAAVSALWRENFGGTDPPPPPVFTLEDRVDFSPE--LVD 1143
FFQDLA+P+S +GKF++P QAAAVSALWR+NFGG+D PPPP +TLEDR + SPE + D
Sbjct: 14 FFQDLASPVSAGKGKFSTPAQAAAVSALWRDNFGGSDLPPPPFYTLEDRSEISPESGIPD 73
Query: 1142 YP---DFKTPVLATPLKS---------RFDAXXXXXXXXSGGPNVKESAG---WWGSGNG 1008
YP D K+ +P +S + + G N ++ + WW
Sbjct: 74 YPLSPDIKSHPTTSPFQSSGREFGTPPKTKSEATTSFALISGQNTQQGSPISTWWSPSKA 133
Query: 1007 NESTEERGGKGSPVNGVVNSASLITLPPVREVVRPDVQRSSFPVGDLDEEEWVTVYGFSP 828
S E GKGSPV GVV +LITLPP REV RP+ R+ P G+LDEEEWVTVYGF+P
Sbjct: 134 RSSEHEDKGKGSPVEGVVQPGALITLPPPREVARPEKHRNCVPAGNLDEEEWVTVYGFAP 193
Query: 827 GDTNLVLREFEKCGTILKHVPGPRTANWMHILYQSRFDAHKALSKSGMQINGVLIVGVKL 648
GDTNLVLREFEKCG ILKHVPGPR ANWMHILYQSR DA KALSK+GMQINGVLI+GVKL
Sbjct: 194 GDTNLVLREFEKCGVILKHVPGPREANWMHILYQSRADAQKALSKNGMQINGVLIIGVKL 253
Query: 647 LDPFQRQALSEAPNGNQGFMTLPPASS-RTTELIPSKLSPRPYHLXXXXXXXQHSAGVIA 471
+DP QRQAL+E N NQGFMTLPP SS RT + + SPRP++L + S GVIA
Sbjct: 254 VDPMQRQALNERIN-NQGFMTLPPPSSTRTPDSNALRASPRPHYLQNGSTSARQSGGVIA 312
Query: 470 SPAKSVVSKIVDLMFGI 420
SPAKS+VSKI D+MFGI
Sbjct: 313 SPAKSMVSKIFDVMFGI 329
>ref|NP_001240960.1| uncharacterized protein LOC100783752 [Glycine max]
gi|255639315|gb|ACU19955.1| unknown [Glycine max]
Length = 331
Score = 352 bits (902), Expect = 2e-94
Identities = 189/317 (59%), Positives = 224/317 (70%), Gaps = 18/317 (5%)
Frame = -1
Query: 1316 FFQDLATPISTHRGKFTSPGQAAAVSALWRENFGGTDPPPPPVFTLEDRVDFSPE--LVD 1143
FFQDLA+P+S RGKF+SP QAAAVS+LWRENFG +D PPPPVFTLEDR DFSPE ++D
Sbjct: 17 FFQDLASPVSARRGKFSSPSQAAAVSSLWRENFGSSDLPPPPVFTLEDRSDFSPESGILD 76
Query: 1142 YP-------DFKTPV------LATPLKSRFDAXXXXXXXXSGGPNVKESAG--WWGSGNG 1008
Y D +TP+ +TP+KS+ +A N + S G WW
Sbjct: 77 YQISPETKSDTRTPIQTSNKEFSTPVKSKSEASTSYALRGVQ-QNQQGSPGLSWWSPTTA 135
Query: 1007 NESTEE-RGGKGSPVNGVVNSASLITLPPVREVVRPDVQRSSFPVGDLDEEEWVTVYGFS 831
E+ G+ SPV GVV +LITLPP EV RP+VQR+S P G+L+EEEWVTVYGFS
Sbjct: 136 KSGGEQDERGRSSPVEGVVQPGALITLPPPLEVARPEVQRNSLPAGNLNEEEWVTVYGFS 195
Query: 830 PGDTNLVLREFEKCGTILKHVPGPRTANWMHILYQSRFDAHKALSKSGMQINGVLIVGVK 651
PGDTN+VLREFEKCG ILKHVPGPR ANWMHILYQ+R DAHKAL+K+GMQINGVLIVGVK
Sbjct: 196 PGDTNMVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHKALNKNGMQINGVLIVGVK 255
Query: 650 LLDPFQRQALSEAPNGNQGFMTLPPASSRTTELIPSKLSPRPYHLXXXXXXXQHSAGVIA 471
LLDP QRQAL+E NQGFM LP S+R +E+ K RPY+L + + G IA
Sbjct: 256 LLDPMQRQALNERLK-NQGFMPLPLPSARNSEVSSLKAPSRPYYLQNGNSTARQTGGTIA 314
Query: 470 SPAKSVVSKIVDLMFGI 420
SP KS+VSKI+DLMFG+
Sbjct: 315 SPTKSLVSKIMDLMFGV 331