BLASTX nr result

ID: Coptis24_contig00007030 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00007030
         (563 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002305712.1| predicted protein [Populus trichocarpa] gi|2...   231   8e-59
gb|ABK93213.1| unknown [Populus trichocarpa] gi|118485561|gb|ABK...   231   8e-59
ref|XP_002519698.1| 60S ribosomal protein L18a, putative [Ricinu...   229   2e-58
ref|XP_002317384.1| predicted protein [Populus trichocarpa] gi|1...   228   4e-58
dbj|BAH20340.1| AT3G14600 [Arabidopsis thaliana]                      227   1e-57

>ref|XP_002305712.1| predicted protein [Populus trichocarpa]
           gi|224079000|ref|XP_002305713.1| predicted protein
           [Populus trichocarpa] gi|224079007|ref|XP_002305715.1|
           predicted protein [Populus trichocarpa]
           gi|118481545|gb|ABK92715.1| unknown [Populus
           trichocarpa] gi|222848676|gb|EEE86223.1| predicted
           protein [Populus trichocarpa]
           gi|222848677|gb|EEE86224.1| predicted protein [Populus
           trichocarpa] gi|222848679|gb|EEE86226.1| predicted
           protein [Populus trichocarpa]
          Length = 178

 Score =  231 bits (588), Expect = 8e-59
 Identities = 110/116 (94%), Positives = 111/116 (95%)
 Frame = -3

Query: 561 AINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFP 382
           AINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNG VEQMYTEMASRHRVRFP
Sbjct: 62  AINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFP 121

Query: 381 CIQIIKTATIPAKLCKRESTKQFHKKDIKFPLVFTKVRPPSRKLKTTYKASRPNVF 214
           CIQIIKTATIPAKLCKRESTKQFH   IKFPLVF KVRPPSRKLKTTYKASRPN+F
Sbjct: 122 CIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKASRPNLF 177


>gb|ABK93213.1| unknown [Populus trichocarpa] gi|118485561|gb|ABK94632.1| unknown
           [Populus trichocarpa]
          Length = 178

 Score =  231 bits (588), Expect = 8e-59
 Identities = 110/116 (94%), Positives = 111/116 (95%)
 Frame = -3

Query: 561 AINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFP 382
           AINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNG VEQMYTEMASRHRVRFP
Sbjct: 62  AINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFP 121

Query: 381 CIQIIKTATIPAKLCKRESTKQFHKKDIKFPLVFTKVRPPSRKLKTTYKASRPNVF 214
           CIQIIKTATIPAKLCKRESTKQFH   IKFPLVF KVRPPSRKLKTTYKASRPN+F
Sbjct: 122 CIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKASRPNLF 177


>ref|XP_002519698.1| 60S ribosomal protein L18a, putative [Ricinus communis]
           gi|223541115|gb|EEF42671.1| 60S ribosomal protein L18a,
           putative [Ricinus communis]
          Length = 303

 Score =  229 bits (585), Expect = 2e-58
 Identities = 109/116 (93%), Positives = 111/116 (95%)
 Frame = -3

Query: 561 AINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFP 382
           AINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNG VEQMYTEMASRHRVRFP
Sbjct: 187 AINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFP 246

Query: 381 CIQIIKTATIPAKLCKRESTKQFHKKDIKFPLVFTKVRPPSRKLKTTYKASRPNVF 214
           CIQIIKTATIPAKLCKRESTKQFH   IKFPLVF KVRPP+RKLKTTYKASRPN+F
Sbjct: 247 CIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 302


>ref|XP_002317384.1| predicted protein [Populus trichocarpa] gi|118483631|gb|ABK93710.1|
           unknown [Populus trichocarpa]
           gi|222860449|gb|EEE97996.1| predicted protein [Populus
           trichocarpa]
          Length = 178

 Score =  228 bits (582), Expect = 4e-58
 Identities = 109/116 (93%), Positives = 110/116 (94%)
 Frame = -3

Query: 561 AINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFP 382
           AINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNG VEQMYTEMASRHRVRFP
Sbjct: 62  AINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFP 121

Query: 381 CIQIIKTATIPAKLCKRESTKQFHKKDIKFPLVFTKVRPPSRKLKTTYKASRPNVF 214
           CIQIIKTATIPAKLCKRESTKQFH   IKFPLVF KVRPPSRKLKTTYKASRPN+F
Sbjct: 122 CIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKASRPNLF 177


>dbj|BAH20340.1| AT3G14600 [Arabidopsis thaliana]
          Length = 150

 Score =  227 bits (578), Expect = 1e-57
 Identities = 107/116 (92%), Positives = 110/116 (94%)
 Frame = -3

Query: 561 AINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFP 382
           AINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFP
Sbjct: 34  AINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFP 93

Query: 381 CIQIIKTATIPAKLCKRESTKQFHKKDIKFPLVFTKVRPPSRKLKTTYKASRPNVF 214
           CIQIIKTAT+PAKLCKRE TKQFH   IKFPLVF KVRPPSRKLKTTYKAS+PN+F
Sbjct: 94  CIQIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLF 149


Top