BLASTX nr result
ID: Coptis24_contig00006780
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00006780
(2216 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris] 48 1e-15
emb|CAN72171.1| hypothetical protein VITISV_036207 [Vitis vinifera] 38 4e-10
emb|CAN67087.1| hypothetical protein VITISV_031092 [Vitis vinifera] 44 1e-07
emb|CAN73119.1| hypothetical protein VITISV_020442 [Vitis vinifera] 44 1e-07
emb|CAE05795.1| OSJNBb0046K02.5 [Oryza sativa Japonica Group] 39 4e-07
>gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris]
Length = 1290
Score = 48.1 bits (113), Expect(3) = 1e-15
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 12/71 (16%)
Frame = +3
Query: 2034 TGSSNVYVFTFGGN*VSWIS------------SKLIALKKTCDDVE*VSNLLANLPIGSK 2177
T S++ YVFT GG V+W S S+ +AL+ + E + N LAN+P+G K
Sbjct: 1138 TKSTSGYVFTLGGGAVTWRSARQTIIARSTMESEFVALEMAGSEAEWLKNFLANIPLGMK 1197
Query: 2178 QPPDMYMLCNC 2210
P + M C+C
Sbjct: 1198 PTPSVSMHCDC 1208
Score = 47.0 bits (110), Expect(3) = 1e-15
Identities = 24/44 (54%), Positives = 28/44 (63%)
Frame = +1
Query: 1720 KYGYYDSKHVLTPFVANIHLMKNNLLVFSHTKYVNIIGSQLYLM 1851
K+GYYD K V TP+ AN L KN S T+Y IIGS L+LM
Sbjct: 1027 KFGYYDFKSVSTPYDANSKLKKNRGESISQTQYAQIIGSLLHLM 1070
Score = 36.2 bits (82), Expect(3) = 1e-15
Identities = 23/61 (37%), Positives = 30/61 (49%)
Frame = +2
Query: 1859 YVRHDIAYINGILS**PTVSL*GTLMYIVRLSKYYSRAIDYGLIFSRFPSLLEG*YVINW 2038
+ R DIAY G LS + RL KY +DY + +S FP++LEG NW
Sbjct: 1072 FSRPDIAYAVGRLSRCTQCPSQDHWEALARLMKYLRGTMDYAIEYSGFPAVLEGYSDANW 1131
Query: 2039 I 2041
I
Sbjct: 1132 I 1132
>emb|CAN72171.1| hypothetical protein VITISV_036207 [Vitis vinifera]
Length = 1096
Score = 37.7 bits (86), Expect(3) = 4e-10
Identities = 24/61 (39%), Positives = 29/61 (47%)
Frame = +2
Query: 1859 YVRHDIAYINGILS**PTVSL*GTLMYIVRLSKYYSRAIDYGLIFSRFPSLLEG*YVINW 2038
Y R DIAY + + R+ KY I+YGL FS FPS+LEG NW
Sbjct: 891 YTRPDIAYADH-------------WTVVRRVLKYLRGTINYGLCFSGFPSVLEGFSDANW 937
Query: 2039 I 2041
I
Sbjct: 938 I 938
Score = 37.4 bits (85), Expect(3) = 4e-10
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 12/68 (17%)
Frame = +3
Query: 2040 SSNVYVFTFGGN*VSWISSK------------LIALKKTCDDVE*VSNLLANLPIGSKQP 2183
S++ YVF GG+ VSW S+K IAL+ +VE + NLL ++P+ ++
Sbjct: 946 STSGYVFILGGSAVSWKSAKQTCITQSIMEAKFIALENASSEVEWLRNLLTDIPLWTRPA 1005
Query: 2184 PDMYMLCN 2207
M + C+
Sbjct: 1006 LSMSICCD 1013
Score = 37.0 bits (84), Expect(3) = 4e-10
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +1
Query: 1720 KYGYYDSKHVLTPFVANIHLMKNNLLVFSHTKYVNIIGSQLYLMD 1854
K+ ++D K V TP+ N L KN + +Y IIGS +YLM+
Sbjct: 846 KFEHFDCKPVSTPYDPNSQLKKNREHSVAQIEYAQIIGSLMYLMN 890
>emb|CAN67087.1| hypothetical protein VITISV_031092 [Vitis vinifera]
Length = 484
Score = 43.9 bits (102), Expect(2) = 1e-07
Identities = 31/76 (40%), Positives = 38/76 (50%)
Frame = +2
Query: 1814 NMSISLVANCT*WIMYVRHDIAYINGILS**PTVSL*GTLMYIVRLSKYYSRAIDYGLIF 1993
N+S+ + NCT R DIAY G LS + R+ KY I+YGL F
Sbjct: 256 NVSLMYLMNCT------RLDIAYAVGRLSWYTQSPNQDHWTIVRRVLKYLRGTINYGLCF 309
Query: 1994 SRFPSLLEG*YVINWI 2041
S FPS+LEG NWI
Sbjct: 310 SGFPSVLEGFSDANWI 325
Score = 40.4 bits (93), Expect(2) = 1e-07
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 12/68 (17%)
Frame = +3
Query: 2040 SSNVYVFTFGGN*VSWISSK------------LIALKKTCDDVE*VSNLLANLPIGSKQP 2183
S++ YVF GG+ VSW S+K IAL+K +VE + N LAN+P+ ++
Sbjct: 333 STSGYVFILGGSVVSWKSTKKTCITRSTMEAEFIALEKASSEVEWLRNFLANVPLWTRPG 392
Query: 2184 PDMYMLCN 2207
+ M C+
Sbjct: 393 LSLSMRCD 400
>emb|CAN73119.1| hypothetical protein VITISV_020442 [Vitis vinifera]
Length = 588
Score = 43.5 bits (101), Expect(2) = 1e-07
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 12/68 (17%)
Frame = +3
Query: 2040 SSNVYVFTFGGN*VSWISSK------------LIALKKTCDDVE*VSNLLANLPIGSKQP 2183
S++ YVF GG+ VSW S+K IAL+K + E + NLLA++P+ ++
Sbjct: 438 STSGYVFILGGSLVSWKSAKQTYIARSTMEAEFIALEKISSEAEWLRNLLADIPLWTRLA 497
Query: 2184 PDMYMLCN 2207
P M M C+
Sbjct: 498 PSMSMRCD 505
Score = 40.4 bits (93), Expect(2) = 1e-07
Identities = 29/74 (39%), Positives = 36/74 (48%)
Frame = +2
Query: 1820 SISLVANCT*WIMYVRHDIAYINGILS**PTVSL*GTLMYIVRLSKYYSRAIDYGLIFSR 1999
S+ + NCT + DIAY G LS + R+ KY I+YGL FS
Sbjct: 363 SLMYLMNCT------KPDIAYAIGRLSRNTQSPNQDHWTVVRRVLKYLRGTINYGLCFSG 416
Query: 2000 FPSLLEG*YVINWI 2041
FPS+LEG NWI
Sbjct: 417 FPSVLEGFSDANWI 430
>emb|CAE05795.1| OSJNBb0046K02.5 [Oryza sativa Japonica Group]
Length = 1356
Score = 38.5 bits (88), Expect(3) = 4e-07
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = +1
Query: 1720 KYGYYDSKHVLTPFVANIHLMKNNLLVFSHTKYVNIIGSQLYL 1848
++GY DSK TP+ ++ L KNN + + +Y IIGS +YL
Sbjct: 1049 RFGYIDSKPSPTPYDPSLLLRKNNRIARNQLEYSQIIGSLMYL 1091
Score = 34.7 bits (78), Expect(3) = 4e-07
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 12/64 (18%)
Frame = +3
Query: 2052 YVFTFGGN*VSWISSK------------LIALKKTCDDVE*VSNLLANLPIGSKQPPDMY 2195
YVFT GG VSW S K L AL + E + +LL +LP+ K P +
Sbjct: 1166 YVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAIL 1225
Query: 2196 MLCN 2207
M C+
Sbjct: 1226 MNCD 1229
Score = 28.5 bits (62), Expect(3) = 4e-07
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 1946 RLSKYYSRAIDYGLIFSRFPSLLEG*YVINWI 2041
R+ +Y ++ GL ++ +P++LEG NWI
Sbjct: 1123 RIMRYLKGTVELGLHYTGYPAVLEGYSDSNWI 1154