BLASTX nr result
ID: Coptis24_contig00006758
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00006758
(1677 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002513582.1| polypyrimidine tract binding protein, putati... 607 e-171
ref|XP_003634092.1| PREDICTED: polypyrimidine tract-binding prot... 601 e-169
emb|CAN66869.1| hypothetical protein VITISV_013673 [Vitis vinifera] 601 e-169
ref|XP_003526695.1| PREDICTED: polypyrimidine tract-binding prot... 597 e-168
gb|ABK95840.1| unknown [Populus trichocarpa] 595 e-167
>ref|XP_002513582.1| polypyrimidine tract binding protein, putative [Ricinus communis]
gi|223547490|gb|EEF48985.1| polypyrimidine tract binding
protein, putative [Ricinus communis]
Length = 447
Score = 607 bits (1565), Expect = e-171
Identities = 308/431 (71%), Positives = 344/431 (79%), Gaps = 2/431 (0%)
Frame = +2
Query: 92 MTSTSQQQQFRYTQPPSKVLHIRNCPWECTDEELVELGKQFGKVVNTKCNVGANRNQAFI 271
M S S Q QFR TQPPSKVLH+RN PWECT+EEL+ELGK FGKVVNTKCNVGANRNQAFI
Sbjct: 1 MASVSSQPQFRLTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
Query: 272 EFADLNQAXXXXXXXXXXXDPAQLRGKTVYLQYSNRQEIVHNKTSADITGNVLLVTLEGV 451
EF DLNQA +PAQ+RGKTVYLQYSNRQEIV+NKT+AD+ GNVLLVT+EG
Sbjct: 61 EFMDLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGA 120
Query: 452 EPHDVSIDVLHLVFSAFGFVQKIATFEKTAGFQALIQFSDQEVASTARSTLDGRSIPRYL 631
+ VSIDVLHLVFSAFGFV KI TFEKTAGFQAL+QFSD E AS+A++ LDGR+IPRYL
Sbjct: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETASSAKNALDGRNIPRYL 180
Query: 632 LPERVNTCMLKITFSGHTDLNVKFQSHRSRDYTNPNLPVAPSAIDGSGQFSVGLDGTKQE 811
LPE + C L+IT+S HTDL+VKFQSHRSRDYTNPNLPVAPSAIDGSG F+VGLDG K E
Sbjct: 181 LPEHIGPCTLRITYSAHTDLSVKFQSHRSRDYTNPNLPVAPSAIDGSGMFTVGLDGKKLE 240
Query: 812 QESNVLLASIENMQYLVNVDVLQTVFSSFGQVQKIAMFEKNGGTHALIQYPDAQTAVVAK 991
ESNVLLASIENMQY V +DVL VFS+FG VQKIAMF+KNGG ALIQYPD QTAVVAK
Sbjct: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
Query: 992 EALEGHCIYDGGFCKLHISYSRHTDLSVKVNNDRSRDYTSPNLFMLNTQPSVLGQQPGFI 1171
EALEGHCIYDGGFCKLHISYSRH+DLS+KVNNDRSRDYT PN M+N QPS+LGQQP
Sbjct: 301 EALEGHCIYDGGFCKLHISYSRHSDLSIKVNNDRSRDYTIPNPAMVNPQPSILGQQPVPT 360
Query: 1172 VGPHAPLYAGPQFAPAANVVNTALPTAQW--GLPSAPVYQPMVHQFSNTYMPPGTLHYEM 1345
VGP A Y+G QFAP P+A W +P+ P P ++ Y P G + +M
Sbjct: 361 VGPPAHPYSGAQFAPHTEHPVMPQPSAGWTAAVPAGPHSMP-PQMNNHPYFPSGAMPPQM 419
Query: 1346 GPGPLIMQMPG 1378
GPG +MQMPG
Sbjct: 420 GPG--MMQMPG 428
>ref|XP_003634092.1| PREDICTED: polypyrimidine tract-binding protein homolog 2-like [Vitis
vinifera]
Length = 446
Score = 601 bits (1549), Expect = e-169
Identities = 308/446 (69%), Positives = 345/446 (77%), Gaps = 11/446 (2%)
Frame = +2
Query: 92 MTSTSQQQQFRYTQPPSKVLHIRNCPWECTDEELVELGKQFGKVVNTKCNVGANRNQAFI 271
M S S Q QFRYTQPPSKVLH+RN PWECT+EEL+ELGK FGKVVNTKCNVGANRNQAFI
Sbjct: 1 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
Query: 272 EFADLNQAXXXXXXXXXXXDPAQLRGKTVYLQYSNRQEIVHNKTSADITGNVLLVTLEGV 451
EFADLNQA +PAQ+RGKTVYLQYSNRQEIV+NKTSAD+ GNVLLVT+EG
Sbjct: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTSADVAGNVLLVTIEGA 120
Query: 452 EPHDVSIDVLHLVFSAFGFVQKIATFEKTAGFQALIQFSDQEVASTARSTLDGRSIPRYL 631
+ VSIDVLHLVFSAFGFV KI TFEKTAGFQAL+QFSD E AS A++ LDGRSIPRYL
Sbjct: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDSETASAAKNALDGRSIPRYL 180
Query: 632 LPERVNTCMLKITFSGHTDLNVKFQSHRSRDYTNPNLPVAPSAIDGSGQFSVGLDGTKQE 811
LPE + C L+ITFS HTDL+VKFQSHRSRDYTNP LPVA SAIDGSGQFS+G DG K E
Sbjct: 181 LPEHLGPCTLRITFSAHTDLSVKFQSHRSRDYTNPYLPVASSAIDGSGQFSMGFDGRKVE 240
Query: 812 QESNVLLASIENMQYLVNVDVLQTVFSSFGQVQKIAMFEKNGGTHALIQYPDAQTAVVAK 991
ESNVLLASIENMQY V +DVL VFS+FG +QKIAMF+KNGG ALIQYPD QTA+VAK
Sbjct: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPIQKIAMFDKNGGVQALIQYPDVQTAIVAK 300
Query: 992 EALEGHCIYDGGFCKLHISYSRHTDLSVKVNNDRSRDYTSPNLFMLNTQPSVLGQQPGFI 1171
EALEGHCIYDGGFCKLHISYSRHTDLS+KVNNDRSRDYTSP +L++QPSVLGQQP I
Sbjct: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTSP---VLSSQPSVLGQQPVPI 357
Query: 1172 VGPHAPLYAGPQFAPAANVVNTALPTAQW-------GLPSAPVYQPMVHQFSNTYMPPGT 1330
GP + G Q+A ++ P+A W G P P + Q ++ YMPPGT
Sbjct: 358 PGPSTHQFEGAQYASPSDQPVIHQPSAGWATSAAAAGAPPPPPQSMPMQQHNHPYMPPGT 417
Query: 1331 LHYEMGPGPLIMQ----MPGPNVQPP 1396
+ + PG + MQ +P PP
Sbjct: 418 MPPQPVPGMMPMQTQTGLPQSAAMPP 443
>emb|CAN66869.1| hypothetical protein VITISV_013673 [Vitis vinifera]
Length = 755
Score = 601 bits (1549), Expect = e-169
Identities = 308/446 (69%), Positives = 345/446 (77%), Gaps = 11/446 (2%)
Frame = +2
Query: 92 MTSTSQQQQFRYTQPPSKVLHIRNCPWECTDEELVELGKQFGKVVNTKCNVGANRNQAFI 271
M S S Q QFRYTQPPSKVLH+RN PWECT+EEL+ELGK FGKVVNTKCNVGANRNQAFI
Sbjct: 310 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 369
Query: 272 EFADLNQAXXXXXXXXXXXDPAQLRGKTVYLQYSNRQEIVHNKTSADITGNVLLVTLEGV 451
EFADLNQA +PAQ+RGKTVYLQYSNRQEIV+NKTSAD+ GNVLLVT+EG
Sbjct: 370 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTSADVAGNVLLVTIEGA 429
Query: 452 EPHDVSIDVLHLVFSAFGFVQKIATFEKTAGFQALIQFSDQEVASTARSTLDGRSIPRYL 631
+ VSIDVLHLVFSAFGFV KI TFEKTAGFQAL+QFSD E AS A++ LDGRSIPRYL
Sbjct: 430 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDSETASAAKNALDGRSIPRYL 489
Query: 632 LPERVNTCMLKITFSGHTDLNVKFQSHRSRDYTNPNLPVAPSAIDGSGQFSVGLDGTKQE 811
LPE + C L+ITFS HTDL+VKFQSHRSRDYTNP LPVA SAIDGSGQFS+G DG K E
Sbjct: 490 LPEHLGPCTLRITFSAHTDLSVKFQSHRSRDYTNPYLPVASSAIDGSGQFSMGFDGRKVE 549
Query: 812 QESNVLLASIENMQYLVNVDVLQTVFSSFGQVQKIAMFEKNGGTHALIQYPDAQTAVVAK 991
ESNVLLASIENMQY V +DVL VFS+FG +QKIAMF+KNGG ALIQYPD QTA+VAK
Sbjct: 550 PESNVLLASIENMQYAVTLDVLHMVFSAFGPIQKIAMFDKNGGVQALIQYPDVQTAIVAK 609
Query: 992 EALEGHCIYDGGFCKLHISYSRHTDLSVKVNNDRSRDYTSPNLFMLNTQPSVLGQQPGFI 1171
EALEGHCIYDGGFCKLHISYSRHTDLS+KVNNDRSRDYTSP +L++QPSVLGQQP I
Sbjct: 610 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTSP---VLSSQPSVLGQQPVPI 666
Query: 1172 VGPHAPLYAGPQFAPAANVVNTALPTAQW-------GLPSAPVYQPMVHQFSNTYMPPGT 1330
GP + G Q+A ++ P+A W G P P + Q ++ YMPPGT
Sbjct: 667 PGPSTHQFEGAQYASPSDQPVIHQPSAGWATSAAAAGAPPPPPQSMPMQQHNHPYMPPGT 726
Query: 1331 LHYEMGPGPLIMQ----MPGPNVQPP 1396
+ + PG + MQ +P PP
Sbjct: 727 MPPQPVPGMMPMQTQTGLPQSAAMPP 752
>ref|XP_003526695.1| PREDICTED: polypyrimidine tract-binding protein homolog 2-like
[Glycine max]
Length = 432
Score = 597 bits (1538), Expect = e-168
Identities = 304/444 (68%), Positives = 340/444 (76%), Gaps = 1/444 (0%)
Frame = +2
Query: 92 MTSTSQQQQFRYTQPPSKVLHIRNCPWECTDEELVELGKQFGKVVNTKCNVGANRNQAFI 271
M S S Q QFRYTQPPSKVLH+RN PWECT+EEL+ELGK FGKVVNTKCNVGANRNQAFI
Sbjct: 1 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
Query: 272 EFADLNQAXXXXXXXXXXXDPAQLRGKTVYLQYSNRQEIVHNKTSADITGNVLLVTLEGV 451
EFADLNQA +PAQ+RGKTVYLQYSNRQEIV+NKT+AD+ GNVLLVT+EG
Sbjct: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVPGNVLLVTIEGA 120
Query: 452 EPHDVSIDVLHLVFSAFGFVQKIATFEKTAGFQALIQFSDQEVASTARSTLDGRSIPRYL 631
+ VSIDVLHLVFSAFGFV KI TFEKTAGFQAL+QFSD E A++A+ LDGRSIPRYL
Sbjct: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETATSAKDALDGRSIPRYL 180
Query: 632 LPERVNTCMLKITFSGHTDLNVKFQSHRSRDYTNPNLPVAPSAIDGSGQFSVGLDGTKQE 811
LPE V C L+IT+SGH+DL+VKFQSHRSRDYTNP LPVAPSA++GSGQ VGLDG + E
Sbjct: 181 LPEHVGPCTLRITYSGHSDLSVKFQSHRSRDYTNPYLPVAPSAVEGSGQAMVGLDGKRLE 240
Query: 812 QESNVLLASIENMQYLVNVDVLQTVFSSFGQVQKIAMFEKNGGTHALIQYPDAQTAVVAK 991
ESNVLLASIENMQY V +DVL VFS+FG VQKIAMF+KNGG ALIQYPD QTAVVAK
Sbjct: 241 TESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDTQTAVVAK 300
Query: 992 EALEGHCIYDGGFCKLHISYSRHTDLSVKVNNDRSRDYTSPNLFMLNTQPSVLGQQPGFI 1171
EALEGHCIYDGGFCKLH+SYSRHTDLS+KVNNDRSRDYT PN ++N QPS+ GQQ +
Sbjct: 301 EALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPNTPIVNAQPSIFGQQSVSM 360
Query: 1172 VGPHAPLYAGPQFAPAANVVNTALPTAQWG-LPSAPVYQPMVHQFSNTYMPPGTLHYEMG 1348
+GP + G Q A WG P A V + +N YMPPGT+ +M
Sbjct: 361 MGPSQQPFYGSQ--------------AGWGTAPPAAVQSMPMQMHNNVYMPPGTMPQQMA 406
Query: 1349 PGPLIMQMPGPNVQPPVTGMRPNG 1420
PG MQ P N P T M G
Sbjct: 407 PG---MQFPSHNTAQPTTTMPSYG 427
>gb|ABK95840.1| unknown [Populus trichocarpa]
Length = 442
Score = 595 bits (1534), Expect = e-167
Identities = 306/442 (69%), Positives = 340/442 (76%), Gaps = 1/442 (0%)
Frame = +2
Query: 92 MTSTSQQQQFRYTQPPSKVLHIRNCPWECTDEELVELGKQFGKVVNTKCNVGANRNQAFI 271
M+S S Q QFR TQPPSKVLH+RN PWECT+EELVELGK FGKVVNTKCNVG NRNQAFI
Sbjct: 1 MSSVSSQPQFRLTQPPSKVLHLRNLPWECTEEELVELGKPFGKVVNTKCNVGPNRNQAFI 60
Query: 272 EFADLNQAXXXXXXXXXXXDPAQLRGKTVYLQYSNRQEIVHNKTSADITGNVLLVTLEGV 451
EF+DLNQA +PAQ+RGKTVYLQYSNRQEIV+NKT+AD+ GNVLLVT+EG
Sbjct: 61 EFSDLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVGGNVLLVTIEGA 120
Query: 452 EPHDVSIDVLHLVFSAFGFVQKIATFEKTAGFQALIQFSDQEVASTARSTLDGRSIPRYL 631
+ VSIDVLHLVFSAFGFV KI TFEKTAGFQAL+QFSD E AS+A++ LDGR+IP YL
Sbjct: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETASSAKNALDGRNIPSYL 180
Query: 632 LPERVNTCMLKITFSGHTDLNVKFQSHRSRDYTNPNLPVAPSAIDGSGQFSVGLDGTKQE 811
LPE + C L+IT+S HTDL+VKFQSHRSRDYTN NLPVAPSAID +G FSVGLDG K E
Sbjct: 181 LPEHLGPCTLRITYSAHTDLSVKFQSHRSRDYTNANLPVAPSAIDANGMFSVGLDGKKLE 240
Query: 812 QESNVLLASIENMQYLVNVDVLQTVFSSFGQVQKIAMFEKNGGTHALIQYPDAQTAVVAK 991
ESNVLLASIENMQY V +DVL VFSSFG VQKIAMF+KNGG ALIQYPD QTAVVAK
Sbjct: 241 PESNVLLASIENMQYAVTLDVLHMVFSSFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
Query: 992 EALEGHCIYDGGFCKLHISYSRHTDLSVKVNNDRSRDYTSPNLFMLNTQPSVLGQQPGFI 1171
EALEGHCIYDGGFCKLH+SYSRH+DLS+KVNNDRSRDYT PN M+N QPS+LGQQP
Sbjct: 301 EALEGHCIYDGGFCKLHLSYSRHSDLSIKVNNDRSRDYTIPNTVMMNPQPSILGQQPVAT 360
Query: 1172 VGPHAPLYAGPQFAPAANVVNTALPTAQWGLPSAPVYQPMVHQFSNT-YMPPGTLHYEMG 1348
GP A Y G Q P+A W PV M Q +N Y+PPGT+ +MG
Sbjct: 361 HGPPAHTYPGAQHHQM-----MPQPSAGWATGGPPVPHSMPAQMNNNPYLPPGTMPPQMG 415
Query: 1349 PGPLIMQMPGPNVQPPVTGMRP 1414
G +MQMP P M P
Sbjct: 416 HG--MMQMPNHGGLPHAPAMPP 435