BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00006721
         (406 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003602361.1| Polyadenylate-binding protein [Medicago trun...    63   2e-08
gb|AFK34352.1| unknown [Medicago truncatula]                           62   4e-08
ref|XP_003602357.1| Splicing factor, arginine/serine-rich [Medic...    62   4e-08
ref|XP_002317806.1| predicted protein [Populus trichocarpa] gi|2...    61   1e-07
ref|XP_002272223.1| PREDICTED: uncharacterized protein LOC100245...    61   1e-07

>ref|XP_003602361.1| Polyadenylate-binding protein [Medicago truncatula]
           gi|355491409|gb|AES72612.1| Polyadenylate-binding
           protein [Medicago truncatula]
          Length = 384

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 54/147 (36%), Positives = 72/147 (48%), Gaps = 35/147 (23%)
 Frame = +2

Query: 50  AVVENTVTETV----PKHESNLEKNDLDENSV-VVDHKKVQM--NGTKYGFGNYDEKE-- 202
           +VV +  TE V    PK + NL  N ++ N V V++H++     NG  +GF  +   +  
Sbjct: 21  SVVSSDSTEVVEKSKPKTDQNLNTNSVNTNVVGVINHQQQDSVPNGN-HGFIAHQMSQMH 79

Query: 203 -NGTRD-----------------EMKDLEELLSKLNPMAEEFIPTSLVMINGNNNNHG-- 322
            NG ++                 EM+DLEELLSKLNPMAEEF+P SLV      N HG  
Sbjct: 80  GNGVQNQHLVDGYGGNGGESFKREMRDLEELLSKLNPMAEEFVPPSLV-----TNYHGYL 134

Query: 323 ------SFLMNGNFYGMQNKMGNGNAN 385
                  F    N + +QN  GN NAN
Sbjct: 135 AAGPNAGFGYPNNNFMLQNNFGNANAN 161


>gb|AFK34352.1| unknown [Medicago truncatula]
          Length = 376

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 46/113 (40%), Positives = 56/113 (49%), Gaps = 11/113 (9%)
 Frame = +2

Query: 101 LEKNDLDENSVVVDHKKVQMNGTKYGFGNYDEKENGTRD---EMKDLEELLSKLNPMAEE 271
           +  N +  +  VV++    MNG + G       ENG      EM+DLEELLSKLNPMAEE
Sbjct: 69  MHANGVQNHQFVVNNDGYVMNGLRNG-------ENGGESFKREMRDLEELLSKLNPMAEE 121

Query: 272 FIPTSLVMINGNNNNHG--------SFLMNGNFYGMQNKMGNGNANGYTGRRK 406
           F+P SL       NNHG         F    NF  + N     NANG T RR+
Sbjct: 122 FVPPSL------TNNHGYLAAGPAAGFGYPNNFILLNN---YANANGQTNRRR 165


>ref|XP_003602357.1| Splicing factor, arginine/serine-rich [Medicago truncatula]
           gi|355491405|gb|AES72608.1| Splicing factor,
           arginine/serine-rich [Medicago truncatula]
          Length = 384

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 46/113 (40%), Positives = 56/113 (49%), Gaps = 11/113 (9%)
 Frame = +2

Query: 101 LEKNDLDENSVVVDHKKVQMNGTKYGFGNYDEKENGTRD---EMKDLEELLSKLNPMAEE 271
           +  N +  +  VV++    MNG + G       ENG      EM+DLEELLSKLNPMAEE
Sbjct: 69  MHANGVQNHQFVVNNDGYVMNGLRNG-------ENGGESFKREMRDLEELLSKLNPMAEE 121

Query: 272 FIPTSLVMINGNNNNHG--------SFLMNGNFYGMQNKMGNGNANGYTGRRK 406
           F+P SL       NNHG         F    NF  + N     NANG T RR+
Sbjct: 122 FVPPSL------TNNHGYLAAGPAAGFGYPNNFILLNN---YANANGQTNRRR 165


>ref|XP_002317806.1| predicted protein [Populus trichocarpa] gi|222858479|gb|EEE96026.1|
           predicted protein [Populus trichocarpa]
          Length = 293

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 37/73 (50%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
 Frame = +2

Query: 197 KENGTRDEMKDLEELLSKLNPMAEEFIPTSLVMINGNNNNHGSFLMNGNFYGMQN---KM 367
           K NG  D M DL E+LSKLNPMAEEF+P SL        NH  F  NG  +   N   ++
Sbjct: 18  KSNGVND-MNDLVEMLSKLNPMAEEFVPPSLA-------NHPGFFGNGFGFNANNFLVQI 69

Query: 368 GNGNANGYTGRRK 406
            NG ANG T RRK
Sbjct: 70  NNGIANGQTNRRK 82


>ref|XP_002272223.1| PREDICTED: uncharacterized protein LOC100245327 [Vitis vinifera]
           gi|302143972|emb|CBI23077.3| unnamed protein product
           [Vitis vinifera]
          Length = 361

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 44/116 (37%), Positives = 65/116 (56%)
 Frame = +2

Query: 59  ENTVTETVPKHESNLEKNDLDENSVVVDHKKVQMNGTKYGFGNYDEKENGTRDEMKDLEE 238
           EN  ++ +P+ +     N +          K+QM G+   FG   ++E+G   +++DLE+
Sbjct: 56  ENYYSQKIPQFQQKAGSNGV---------AKIQMVGS---FGR--DREDG--GDIRDLED 99

Query: 239 LLSKLNPMAEEFIPTSLVMINGNNNNHGSFLMNGNFYGMQNKMGNGNANGYTGRRK 406
           LLSKLNPMAEEF+P SL   NG+  + G+     N + +Q     GNANG  GRRK
Sbjct: 100 LLSKLNPMAEEFVPPSLA--NGHGWSAGAAFGYTNNFVLQANF--GNANGNAGRRK 151