BLASTX nr result
ID: Coptis24_contig00006690
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00006690
(1428 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAJ33917.1| unnamed protein product [Thellungiella halophila] 275 2e-71
gb|AFW81478.1| transcription factor/ transcription initiation fa... 271 2e-70
ref|NP_563790.1| transcription initiation factor TFIIA large sub... 269 1e-69
gb|ACN31103.1| unknown [Zea mays] 268 3e-69
gb|AFW81479.1| hypothetical protein ZEAMMB73_123227 [Zea mays] 266 1e-68
>dbj|BAJ33917.1| unnamed protein product [Thellungiella halophila]
Length = 375
Score = 275 bits (703), Expect = 2e-71
Identities = 177/404 (43%), Positives = 209/404 (51%), Gaps = 46/404 (11%)
Frame = +1
Query: 133 TTSGVYINMIEDVVNKVRDDFLQSN-VDESVLHELQGLWEMKMMQYGAILGPIERSTVPK 309
TTS VYI++IEDVVNKVR++F+ + ESVL+ELQG+WEMKMMQ G + GPIERS+ K
Sbjct: 6 TTSAVYIHVIEDVVNKVREEFINNGGPGESVLNELQGIWEMKMMQAGVLSGPIERSSAQK 65
Query: 310 LPTNGAPAVGPTPVHDLNVXXXXXXXXXXXXAEXXXXXXXXXXXXXXXXXGTAQTPLPGT 489
PT G P HDLNV AE P
Sbjct: 66 -PTPGGPL-----THDLNVPYEGTEEYETPTAEMLFP--------------------PTP 99
Query: 490 VQTPLPGNVQTPLPGSGEN-SMYQLPT-ISDYSSGHESVTPNEVKPGMPSPYMQAPSPWM 663
+QTPLP TPLPG+ +N SMY +PT SDY + N G PSPYMQ PSPW
Sbjct: 100 LQTPLP----TPLPGTADNSSMYNIPTGSSDYPTPGTENGSNPDAKGRPSPYMQPPSPWT 155
Query: 664 NQRPLGVDVNVAYVEGREEGDRGNPPQPTTQDFFMMSSGKRKREDFAPHFHGGGYIPQQD 843
N R +DVNVAYV+GR+E +RGN Q TQD F+ S+GKRKR+D + + GG IPQQD
Sbjct: 156 NPR---LDVNVAYVDGRDEPERGNSNQQFTQDLFVPSNGKRKRDDSSAQYQNGGSIPQQD 212
Query: 844 GVGDG-----------------------------------------AYDVFQN--ELYPY 894
G D YD + +Y Y
Sbjct: 213 GASDAMPKANIEGDTLCITLVGNRKFPRDFICSSSKIPQVDGPMPDPYDEILSTPNIYSY 272
Query: 895 QGVASEDYNTVNTPAPLDLHAGTPNVGAQNXXXXXXXXXXXXXXXXXXXXXXXXXXXNTQ 1074
QG SED+N TPAP ++ A TP + NTQ
Sbjct: 273 QG-PSEDFNDGRTPAPNEIQASTPVAAQNDIIEDDEELLNEDDDDDELDDLESGEDMNTQ 331
Query: 1075 HLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFTKATGEFEF 1206
HLVLAQFDKVTRTKSRWKC LKDGIMHIN+KDILF KA GEF+F
Sbjct: 332 HLVLAQFDKVTRTKSRWKCNLKDGIMHINDKDILFNKAAGEFDF 375
>gb|AFW81478.1| transcription factor/ transcription initiation factor [Zea mays]
Length = 434
Score = 271 bits (694), Expect = 2e-70
Identities = 172/435 (39%), Positives = 216/435 (49%), Gaps = 57/435 (13%)
Frame = +1
Query: 73 ELELPITSILTFKSIIFVMATTSGVYINMIEDVVNKVRDDFLQSNVDESVLHELQGLWEM 252
E P L + + + S VYI++I+DV++KVR+DF+ V ++VL+ELQ LWEM
Sbjct: 29 EASPPAAETLASAAAVMASSNVSTVYISVIDDVISKVREDFITYGVGDAVLNELQALWEM 88
Query: 253 KMMQYGAILGPIERSTVPKLPTNGAPAVGPTPVHDLNVXXXXXXXXXXXXAEXXXXXXXX 432
KM+ GAI G I+R+ G P PVHDLNV
Sbjct: 89 KMLHCGAISGNIDRTKAAAASVGGTTGTTP-PVHDLNVPYEATSEEYATP---------- 137
Query: 433 XXXXXXXXXGTAQTPLPGTVQTPLPGNVQTPLPGSGENSMYQLPT---------ISDYSS 585
TA P TPL +QTPLPG+ + +MY +PT ISD +
Sbjct: 138 ----------TADMLFP---PTPLQTPIQTPLPGT-DTAMYNIPTGPSDYAPSPISDVRN 183
Query: 586 GHESVTPNEVKPGMPSPYMQAPSPWMNQRPLGVDVNVAYVEGREEGDRGNPPQPTTQDFF 765
G ++ + G PSPYM PSPWMNQRPLGVDVNVAYVEGRE+ DRG PQP TQDF
Sbjct: 184 G-MAINGADPTAGHPSPYMPPPSPWMNQRPLGVDVNVAYVEGREDPDRGVQPQPLTQDFL 242
Query: 766 MMSSGKRKREDFAPHFHGGGYIPQQDGVG------------------------------- 852
MMSSGKRKR+++ G ++PQQDG
Sbjct: 243 MMSSGKRKRDEYPGQLPSGSFVPQQDGSADQIVEFVVSKENANQLWSSIGNKLETPTKTI 302
Query: 853 -------DGAYDVFQNELYPYQGVASEDYNTVNTPAPLDLHAGTPNVGA----------Q 981
DG D + ++ + + GV +EDYNT A + A TP VG
Sbjct: 303 TPVIPQRDGIQDNYNDQFF-FPGVPTEDYNTPGESA--EYRAPTPAVGTPKQRNDAGDDD 359
Query: 982 NXXXXXXXXXXXXXXXXXXXXXXXXXXXNTQHLVLAQFDKVTRTKSRWKCTLKDGIMHIN 1161
N NTQHLVLAQFDKV+RTK+RWKCTLKDGIMH+N
Sbjct: 360 NDDDDDEPPLNEDDDEELDDLEQGEDEPNTQHLVLAQFDKVSRTKNRWKCTLKDGIMHLN 419
Query: 1162 NKDILFTKATGEFEF 1206
+D+LF KATGEF+F
Sbjct: 420 GRDVLFNKATGEFDF 434
>ref|NP_563790.1| transcription initiation factor TFIIA large subunit [Arabidopsis
thaliana] gi|15983370|gb|AAL11553.1|AF424559_1
At1g07470/F22G5_13 [Arabidopsis thaliana]
gi|14532726|gb|AAK64164.1| putative transcription factor
IIA large subunit [Arabidopsis thaliana]
gi|15146226|gb|AAK83596.1| At1g07470/F22G5_13
[Arabidopsis thaliana] gi|21554033|gb|AAM63114.1|
transcription factor IIA large subunit [Arabidopsis
thaliana] gi|22136784|gb|AAM91736.1| putative
transcription factor IIA large subunit [Arabidopsis
thaliana] gi|39545872|gb|AAR27999.1| TFIIA-L2
[Arabidopsis thaliana] gi|332190008|gb|AEE28129.1|
transcription initiation factor TFIIA large subunit
[Arabidopsis thaliana]
Length = 375
Score = 269 bits (688), Expect = 1e-69
Identities = 177/405 (43%), Positives = 212/405 (52%), Gaps = 47/405 (11%)
Frame = +1
Query: 133 TTSGVYINMIEDVVNKVRDDFLQSN-VDESVLHELQGLWEMKMMQYGAILGPIERSTVPK 309
TTS VYI++IEDVVNKVR++F+ + ESVL ELQG+WE KMMQ G + GPIERS+ K
Sbjct: 6 TTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSAQK 65
Query: 310 LPTNGAPAVGPTPVHDLNVXXXXXXXXXXXXAEXXXXXXXXXXXXXXXXXGTAQTPLPGT 489
PT G P HDLNV AE P
Sbjct: 66 -PTPGGPL-----THDLNVPYEGTEEYETPTAEMLFP--------------------PTP 99
Query: 490 VQTPLPGNVQTPLPGSGEN-SMYQLPT-ISDY-SSGHESVTPNEVKPGMPSPYMQAPSPW 660
+QTPLP TPLPG+ +N SMY +PT SDY + G E+ +VK PSPYM PSPW
Sbjct: 100 LQTPLP----TPLPGTADNSSMYNIPTGSSDYPTPGTENGVNIDVK-ARPSPYMPPPSPW 154
Query: 661 MNQRPLGVDVNVAYVEGREEGDRGNPPQPTTQDFFMMSSGKRKREDFAPHFHGGGYIPQQ 840
N R +DVNVAYV+GR+E +RGN Q TQD F+ SSGKRKR+D + H+ GG IPQQ
Sbjct: 155 TNPR---LDVNVAYVDGRDEPERGNSNQQFTQDLFVPSSGKRKRDDSSAHYQNGGSIPQQ 211
Query: 841 DGVGDG-----------------------------------------AYDVFQN--ELYP 891
DG D YD + +Y
Sbjct: 212 DGASDAIPEANFECAALRITYVGDRKIPRDLIGSSSKIPQVDGPMPDPYDEMLSTPNIYS 271
Query: 892 YQGVASEDYNTVNTPAPLDLHAGTPNVGAQNXXXXXXXXXXXXXXXXXXXXXXXXXXXNT 1071
YQG +E++N TPAP ++ TP + NT
Sbjct: 272 YQG-PNEEFNEARTPAPNEIQTSTPVAVPNDIIEDDEELLNEDDDDDELDDLESGEDMNT 330
Query: 1072 QHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFTKATGEFEF 1206
QHLVLAQFDKVTRTKSRWKC+LKDGIMHIN+KDILF KATGEF+F
Sbjct: 331 QHLVLAQFDKVTRTKSRWKCSLKDGIMHINDKDILFNKATGEFDF 375
>gb|ACN31103.1| unknown [Zea mays]
Length = 390
Score = 268 bits (685), Expect = 3e-69
Identities = 169/416 (40%), Positives = 211/416 (50%), Gaps = 57/416 (13%)
Frame = +1
Query: 130 ATTSGVYINMIEDVVNKVRDDFLQSNVDESVLHELQGLWEMKMMQYGAILGPIERSTVPK 309
+ S VYI++I+DV++KVR+DF+ V ++VL+ELQ LWEMKM+ GAI G I+R+
Sbjct: 4 SNVSTVYISVIDDVISKVREDFITYGVGDAVLNELQALWEMKMLHCGAISGNIDRTKAAA 63
Query: 310 LPTNGAPAVGPTPVHDLNVXXXXXXXXXXXXAEXXXXXXXXXXXXXXXXXGTAQTPLPGT 489
G P PVHDLNV TA P
Sbjct: 64 ASVGGTTGTTP-PVHDLNVPYEATSEEYATP--------------------TADMLFP-- 100
Query: 490 VQTPLPGNVQTPLPGSGENSMYQLPT---------ISDYSSGHESVTPNEVKPGMPSPYM 642
TPL +QTPLPG+ + +MY +PT ISD +G ++ + G PSPYM
Sbjct: 101 -PTPLQTPIQTPLPGT-DTAMYNIPTGPSDYAPSPISDVRNG-MAINGADPTAGHPSPYM 157
Query: 643 QAPSPWMNQRPLGVDVNVAYVEGREEGDRGNPPQPTTQDFFMMSSGKRKREDFAPHFHGG 822
PSPWMNQRPLGVDVNVAYVEGRE+ DRG PQP TQDF MMSSGKRKR+++ G
Sbjct: 158 PPPSPWMNQRPLGVDVNVAYVEGREDPDRGVQPQPLTQDFLMMSSGKRKRDEYPGQLPSG 217
Query: 823 GYIPQQDGVG--------------------------------------DGAYDVFQNELY 888
++PQQDG DG D + ++ +
Sbjct: 218 SFVPQQDGSADQIVEFVVSKENANQLWSSIGNKLETPTKTITPVIPQRDGIQDNYNDQFF 277
Query: 889 PYQGVASEDYNTVNTPAPLDLHAGTPNVGA----------QNXXXXXXXXXXXXXXXXXX 1038
+ GV +EDYNT A + A TP VG N
Sbjct: 278 -FPGVPTEDYNTPGESA--EYRAPTPAVGTPKQRNDAGDDDNDDDDDEPPLNEDDDEELD 334
Query: 1039 XXXXXXXXXNTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFTKATGEFEF 1206
NTQHLVLAQFDKV+RTK+RWKCTLKDGIMH+N +D+LF KATGEF+F
Sbjct: 335 DLEQGEDEPNTQHLVLAQFDKVSRTKNRWKCTLKDGIMHLNGRDVLFNKATGEFDF 390
>gb|AFW81479.1| hypothetical protein ZEAMMB73_123227 [Zea mays]
Length = 437
Score = 266 bits (680), Expect = 1e-68
Identities = 172/438 (39%), Positives = 216/438 (49%), Gaps = 60/438 (13%)
Frame = +1
Query: 73 ELELPITSILTFKSIIFVMATTSGVYINMIEDVVNKVRDDFLQSNVDESVLHELQGLWEM 252
E P L + + + S VYI++I+DV++KVR+DF+ V ++VL+ELQ LWEM
Sbjct: 29 EASPPAAETLASAAAVMASSNVSTVYISVIDDVISKVREDFITYGVGDAVLNELQALWEM 88
Query: 253 KMMQYGAILGPIERSTVPKLPTNGAPAVGPTPVHDLNVXXXXXXXXXXXXAEXXXXXXXX 432
KM+ GAI G I+R+ G P PVHDLNV
Sbjct: 89 KMLHCGAISGNIDRTKAAAASVGGTTGTTP-PVHDLNVPYEATSEEYATP---------- 137
Query: 433 XXXXXXXXXGTAQTPLPGTVQTPLPGNVQTPLPGSGENSMYQLPT---------ISDYSS 585
TA P TPL +QTPLPG+ + +MY +PT ISD +
Sbjct: 138 ----------TADMLFP---PTPLQTPIQTPLPGT-DTAMYNIPTGPSDYAPSPISDVRN 183
Query: 586 GHESVTPNEVKPGMPSPYM---QAPSPWMNQRPLGVDVNVAYVEGREEGDRGNPPQPTTQ 756
G ++ + G PSPYM PSPWMNQRPLGVDVNVAYVEGRE+ DRG PQP TQ
Sbjct: 184 G-MAINGADPTAGHPSPYMFLQPPPSPWMNQRPLGVDVNVAYVEGREDPDRGVQPQPLTQ 242
Query: 757 DFFMMSSGKRKREDFAPHFHGGGYIPQQDGVG---------------------------- 852
DF MMSSGKRKR+++ G ++PQQDG
Sbjct: 243 DFLMMSSGKRKRDEYPGQLPSGSFVPQQDGSADQIVEFVVSKENANQLWSSIGNKLETPT 302
Query: 853 ----------DGAYDVFQNELYPYQGVASEDYNTVNTPAPLDLHAGTPNVGA-------- 978
DG D + ++ + + GV +EDYNT A + A TP VG
Sbjct: 303 KTITPVIPQRDGIQDNYNDQFF-FPGVPTEDYNTPGESA--EYRAPTPAVGTPKQRNDAG 359
Query: 979 --QNXXXXXXXXXXXXXXXXXXXXXXXXXXXNTQHLVLAQFDKVTRTKSRWKCTLKDGIM 1152
N NTQHLVLAQFDKV+RTK+RWKCTLKDGIM
Sbjct: 360 DDDNDDDDDEPPLNEDDDEELDDLEQGEDEPNTQHLVLAQFDKVSRTKNRWKCTLKDGIM 419
Query: 1153 HINNKDILFTKATGEFEF 1206
H+N +D+LF KATGEF+F
Sbjct: 420 HLNGRDVLFNKATGEFDF 437