BLASTX nr result
ID: Coptis24_contig00006680
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00006680
(1543 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002311536.1| rna-dependent RNA polymerase [Populus tricho... 387 e-105
emb|CBI26820.3| unnamed protein product [Vitis vinifera] 385 e-104
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V... 385 e-104
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 379 e-102
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 379 e-102
>ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase
[Populus trichocarpa]
Length = 1133
Score = 387 bits (995), Expect = e-105
Identities = 189/289 (65%), Positives = 225/289 (77%), Gaps = 7/289 (2%)
Frame = -3
Query: 1109 QTPTLXDHDVKLEEVHEYFANYMVSDSLGIIANAHTAFADKEQGMAESVACRELARLFSI 930
+ P DHDV +EEV EYF NY+V+DSLG+IANAHTA ADKE A S C ELAR FSI
Sbjct: 842 EPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVELARKFSI 901
Query: 929 AVDFPKTGAPAKIPPHLYVKEYPDFMEKPDKPTYESQRVIGKLFREVKDIVPHRSCIPSF 750
AVDFPKTG PA+IP +L +EYPDFMEKPDKP+YES+ VIGKLFREVKDI P S I SF
Sbjct: 902 AVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSSIRSF 961
Query: 749 TWEVAKRCYDHDMEVDGYAYYLDDAKQYKEKYDFKLGNLMDTYGIKTEADILARGLVKES 570
T +VA++CYD DMEVDG+ Y+DDA YK YD+KLGNLM+ YGIKTEA++L+ +K S
Sbjct: 962 TSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSFMKMS 1021
Query: 569 ISYNRKKDADAIGEAVRSLRKEARKWFDEKG----SNSDDIYAKASAWYHVTYHPNYWGA 402
S+ +K+DA+AIG AVRSL+KEAR WF+EKG S +DD+ AKASAWYHVTYH NYWG
Sbjct: 1022 KSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHNYWGC 1081
Query: 401 YNEGMKRDHYLSFPWCVYDKLIHIKRQKAKKVPE---YQSLEEQFRRGV 264
YNEGM RDH+LSFPWCVYDKLI IKR+ + ++ S+E QF RG+
Sbjct: 1082 YNEGMNRDHFLSFPWCVYDKLIQIKRRNSARIRRSLILPSVERQFSRGL 1130
Score = 204 bits (520), Expect = 4e-50
Identities = 89/118 (75%), Positives = 105/118 (88%)
Frame = -2
Query: 1449 IVEGTVVVAKNPCLHPGDVRVLRAVNEPGLHHMVDCVVFPQKGIRPHPNECSGSDLDGDI 1270
+++G+VVVAKNPCLHPGD+R+L+AV+ P LHHMVDCVVFPQKG RPHPNECSGSDLDGDI
Sbjct: 760 LIKGSVVVAKNPCLHPGDLRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDI 819
Query: 1269 YFVSWDHELIPPREVEPMDYTPAPPAIVDHDVKLEEVHEYFANYMVSDSLGIIANAHT 1096
YFV WD ELIP +++ PMDYTP PP +DHDV +EEV EYF NY+V+DSLG+IANAHT
Sbjct: 820 YFVCWDPELIPSQQISPMDYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHT 877
>emb|CBI26820.3| unnamed protein product [Vitis vinifera]
Length = 919
Score = 385 bits (989), Expect = e-104
Identities = 189/284 (66%), Positives = 225/284 (79%), Gaps = 5/284 (1%)
Frame = -3
Query: 1091 DHDVKLEEVHEYFANYMVSDSLGIIANAHTAFADKEQGMAESVACRELARLFSIAVDFPK 912
DHDV +EEV EYF NY+V+DSLGIIANAHT FADKE A C ELA+LFSIAVDFPK
Sbjct: 636 DHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPK 695
Query: 911 TGAPAKIPPHLYVKEYPDFMEKPDKPTYESQRVIGKLFREVKDIVPHRSCIPSFTWEVAK 732
TG PA+IP +L VKEYPDFMEK DKPTYESQ VIGKLFREVKDI PH I SFT +VA+
Sbjct: 696 TGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVAR 755
Query: 731 RCYDHDMEVDGYAYYLDDAKQYKEKYDFKLGNLMDTYGIKTEADILARGLVKESISYNRK 552
+ YD DMEV G+ Y+ DA YK +YD+KLGNLMD YGIKTE++IL+ +++ S S++R+
Sbjct: 756 QSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKSFDRR 815
Query: 551 KDADAIGEAVRSLRKEARKWFDEKG----SNSDDIYAKASAWYHVTYHPNYWGAYNEGMK 384
KDA+AIG AV+SLRKEAR WF++ G S +DD+YAKASAWYHVTYHP+YWG YNEGM
Sbjct: 816 KDAEAIGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYHVTYHPDYWGCYNEGMD 875
Query: 383 RDHYLSFPWCVYDKLIHIKRQK-AKKVPEYQSLEEQFRRGVRFG 255
RDH+LSFPWCVYDKLIH KR+K + + SLE + +G+R G
Sbjct: 876 RDHFLSFPWCVYDKLIHTKRKKMSGRSLHLSSLERRLSQGLRLG 919
Score = 221 bits (562), Expect = 5e-55
Identities = 99/132 (75%), Positives = 113/132 (85%)
Frame = -2
Query: 1491 LFASSSTGSHQRNRIVEGTVVVAKNPCLHPGDVRVLRAVNEPGLHHMVDCVVFPQKGIRP 1312
+F + +GSH N I+EG +VVAKNPCLHPGDVRVL AVN P LHHMVDCVVFPQKG RP
Sbjct: 534 IFVPNGSGSHHDNFILEGKIVVAKNPCLHPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRP 593
Query: 1311 HPNECSGSDLDGDIYFVSWDHELIPPREVEPMDYTPAPPAIVDHDVKLEEVHEYFANYMV 1132
HPNECSGSDLDGDIYFV WD +LIPP+++ PMDYTPAP ++DHDV +EEV EYF NY+V
Sbjct: 594 HPNECSGSDLDGDIYFVCWDRDLIPPQQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIV 653
Query: 1131 SDSLGIIANAHT 1096
+DSLGIIANAHT
Sbjct: 654 NDSLGIIANAHT 665
>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
Length = 1121
Score = 385 bits (989), Expect = e-104
Identities = 189/284 (66%), Positives = 225/284 (79%), Gaps = 5/284 (1%)
Frame = -3
Query: 1091 DHDVKLEEVHEYFANYMVSDSLGIIANAHTAFADKEQGMAESVACRELARLFSIAVDFPK 912
DHDV +EEV EYF NY+V+DSLGIIANAHT FADKE A C ELA+LFSIAVDFPK
Sbjct: 838 DHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPK 897
Query: 911 TGAPAKIPPHLYVKEYPDFMEKPDKPTYESQRVIGKLFREVKDIVPHRSCIPSFTWEVAK 732
TG PA+IP +L VKEYPDFMEK DKPTYESQ VIGKLFREVKDI PH I SFT +VA+
Sbjct: 898 TGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVAR 957
Query: 731 RCYDHDMEVDGYAYYLDDAKQYKEKYDFKLGNLMDTYGIKTEADILARGLVKESISYNRK 552
+ YD DMEV G+ Y+ DA YK +YD+KLGNLMD YGIKTE++IL+ +++ S S++R+
Sbjct: 958 QSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKSFDRR 1017
Query: 551 KDADAIGEAVRSLRKEARKWFDEKG----SNSDDIYAKASAWYHVTYHPNYWGAYNEGMK 384
KDA+AIG AV+SLRKEAR WF++ G S +DD+YAKASAWYHVTYHP+YWG YNEGM
Sbjct: 1018 KDAEAIGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYHVTYHPDYWGCYNEGMD 1077
Query: 383 RDHYLSFPWCVYDKLIHIKRQK-AKKVPEYQSLEEQFRRGVRFG 255
RDH+LSFPWCVYDKLIH KR+K + + SLE + +G+R G
Sbjct: 1078 RDHFLSFPWCVYDKLIHTKRKKMSGRSLHLSSLERRLSQGLRLG 1121
Score = 227 bits (578), Expect = 7e-57
Identities = 107/149 (71%), Positives = 121/149 (81%)
Frame = -2
Query: 1542 VFIQISHAGRKQNGNGGLFASSSTGSHQRNRIVEGTVVVAKNPCLHPGDVRVLRAVNEPG 1363
VF+QIS G +Q+ L S GSH N I+EG +VVAKNPCLHPGDVRVL AVN P
Sbjct: 720 VFVQISGTGGRQSFGDSLMFRGS-GSHHDNFILEGKIVVAKNPCLHPGDVRVLWAVNVPT 778
Query: 1362 LHHMVDCVVFPQKGIRPHPNECSGSDLDGDIYFVSWDHELIPPREVEPMDYTPAPPAIVD 1183
LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD +LIPP+++ PMDYTPAP ++D
Sbjct: 779 LHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQINPMDYTPAPTKVLD 838
Query: 1182 HDVKLEEVHEYFANYMVSDSLGIIANAHT 1096
HDV +EEV EYF NY+V+DSLGIIANAHT
Sbjct: 839 HDVMIEEVEEYFTNYIVNDSLGIIANAHT 867
>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 379 bits (972), Expect = e-102
Identities = 184/285 (64%), Positives = 224/285 (78%), Gaps = 6/285 (2%)
Frame = -3
Query: 1100 TLXDHDVKLEEVHEYFANYMVSDSLGIIANAHTAFADKEQGMAESVACRELARLFSIAVD 921
T DH+V +EE+ EYF NY+V+DSLGII+NAHTAFAD+E A S C ELA+LFSIAVD
Sbjct: 823 TKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPDKAMSRPCLELAKLFSIAVD 882
Query: 920 FPKTGAPAKIPPHLYVKEYPDFMEKPDKPTYESQRVIGKLFREVKDIVPHRSCIPSFTWE 741
FPKTG PA+IP L VKEYPDFMEKPDKP+Y+S VIGKLFREVK++ P+ I T E
Sbjct: 883 FPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNLAPNECSIKFLTRE 942
Query: 740 VAKRCYDHDMEVDGYAYYLDDAKQYKEKYDFKLGNLMDTYGIKTEADILARGLVKESISY 561
+R YD DMEV+G+ Y+DDA +K KYD+KLGNLMD YG+KTEA+IL G++K S S+
Sbjct: 943 KMQRFYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEAEILGGGIMKMSRSF 1002
Query: 560 NRKKDADAIGEAVRSLRKEARKWFDEKGS----NSDDIYAKASAWYHVTYHPNYWGAYNE 393
+K+DA+AI AVRSLRKEAR WF+EKGS DD YAKASAWY+VTYHP+YWG YNE
Sbjct: 1003 TKKRDAEAISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHPSYWGQYNE 1062
Query: 392 GMKRDHYLSFPWCVYDKLIHIKRQKA--KKVPEYQSLEEQFRRGV 264
GM RDH+LSFPWCVYDKLI IK++KA ++ + SLE +F+RG+
Sbjct: 1063 GMNRDHFLSFPWCVYDKLIQIKKEKAAVREALDLSSLEHRFQRGL 1107
Score = 207 bits (526), Expect = 8e-51
Identities = 93/134 (69%), Positives = 110/134 (82%)
Frame = -2
Query: 1497 GGLFASSSTGSHQRNRIVEGTVVVAKNPCLHPGDVRVLRAVNEPGLHHMVDCVVFPQKGI 1318
G +F S +R IV+G V+VAKNPCLHPGDVRVLRAVN P LHHMVDCVVFPQKG
Sbjct: 722 GQVFVQFSGSRSERRFIVQGKVIVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGT 781
Query: 1317 RPHPNECSGSDLDGDIYFVSWDHELIPPREVEPMDYTPAPPAIVDHDVKLEEVHEYFANY 1138
RPHPNECSGSDLDGD+YFV WD ELIP ++++PMDY+PA +DH+V +EE+ EYF NY
Sbjct: 782 RPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPMDYSPASTTKLDHEVTIEEIEEYFTNY 841
Query: 1137 MVSDSLGIIANAHT 1096
+V+DSLGII+NAHT
Sbjct: 842 IVNDSLGIISNAHT 855
>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 379 bits (972), Expect = e-102
Identities = 184/284 (64%), Positives = 224/284 (78%), Gaps = 6/284 (2%)
Frame = -3
Query: 1100 TLXDHDVKLEEVHEYFANYMVSDSLGIIANAHTAFADKEQGMAESVACRELARLFSIAVD 921
T DH+V +EE+ EYF NY+V+DSLGII+NAHTAFAD+E G A S C ELA+LFSIAVD
Sbjct: 823 TKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMSRPCLELAKLFSIAVD 882
Query: 920 FPKTGAPAKIPPHLYVKEYPDFMEKPDKPTYESQRVIGKLFREVKDIVPHRSCIPSFTWE 741
FPKTG PA+IP L VKE+PDFMEKPDKP+Y+S VIGKLFREVK++ P+ I T E
Sbjct: 883 FPKTGVPAEIPQELRVKEFPDFMEKPDKPSYQSYNVIGKLFREVKNLAPNECSIKLLTRE 942
Query: 740 VAKRCYDHDMEVDGYAYYLDDAKQYKEKYDFKLGNLMDTYGIKTEADILARGLVKESISY 561
KR YD DMEV+G+ Y+DDA YK KYD+KLGNLMD YG+KTEA+IL+ G++K S S+
Sbjct: 943 KMKRFYDPDMEVEGFVDYIDDAFFYKSKYDYKLGNLMDYYGVKTEAEILSGGIMKMSRSF 1002
Query: 560 NRKKDADAIGEAVRSLRKEARKWFDEKGS----NSDDIYAKASAWYHVTYHPNYWGAYNE 393
+K+DA++I AVRSLRKEAR WF+EKGS DD YAKASAWY+VTYH +YWG YNE
Sbjct: 1003 TKKRDAESISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHHSYWGQYNE 1062
Query: 392 GMKRDHYLSFPWCVYDKLIHIKRQKA--KKVPEYQSLEEQFRRG 267
GM RDH+LSFPWCVYDKLI IK++KA ++ + SLE +F+RG
Sbjct: 1063 GMNRDHFLSFPWCVYDKLIQIKKEKAALREALDLSSLEHRFQRG 1106
Score = 207 bits (526), Expect = 8e-51
Identities = 93/134 (69%), Positives = 110/134 (82%)
Frame = -2
Query: 1497 GGLFASSSTGSHQRNRIVEGTVVVAKNPCLHPGDVRVLRAVNEPGLHHMVDCVVFPQKGI 1318
G +F S +R IV+G V+VAKNPCLHPGDVRVLRAVN P LHHMVDCVVFPQKG
Sbjct: 722 GQVFVQFSGSRSERRFIVQGKVIVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGT 781
Query: 1317 RPHPNECSGSDLDGDIYFVSWDHELIPPREVEPMDYTPAPPAIVDHDVKLEEVHEYFANY 1138
RPHPNECSGSDLDGD+YFV WD ELIP ++++PMDY+PA +DH+V +EE+ EYF NY
Sbjct: 782 RPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPMDYSPASTTKLDHEVTIEEIEEYFTNY 841
Query: 1137 MVSDSLGIIANAHT 1096
+V+DSLGII+NAHT
Sbjct: 842 IVNDSLGIISNAHT 855