BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00006610
         (1373 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276497.1| PREDICTED: THO complex subunit 4 [Vitis vini...   222   2e-55
ref|XP_002531919.1| RNA and export factor binding protein, putat...   218   4e-54
ref|XP_003553032.1| PREDICTED: THO complex subunit 4-like [Glyci...   197   4e-48
ref|XP_004145851.1| PREDICTED: THO complex subunit 4-like [Cucum...   192   1e-46
ref|XP_003537446.1| PREDICTED: uncharacterized protein LOC100820...   192   2e-46

>ref|XP_002276497.1| PREDICTED: THO complex subunit 4 [Vitis vinifera]
           gi|296087136|emb|CBI33510.3| unnamed protein product
           [Vitis vinifera]
          Length = 269

 Score =  222 bits (566), Expect = 2e-55
 Identities = 128/269 (47%), Positives = 150/269 (55%)
 Frame = +2

Query: 101 MANPLDMPLDDIIKSDKXXXXXXXXXXXXXXXXXXXXXXXASNFRSAGPKGNLRVNARPS 280
           MA  LDM LDDIIK                                   +G LRVNARPS
Sbjct: 1   MATSLDMSLDDIIKRSNSERVRGRGRARRGRGPIGGSFNGGRMSGIPPRRGPLRVNARPS 60

Query: 281 AHTIAKTFSRNKTVPWQRGLLEDSLIAAGYSGTETGAKLYVSNLHSGVTNEDIKELFSLI 460
           ++ IAK+  R K +PWQ  L EDSL AAG  G E G KLY+SNL  GVTNEDI+ELFS I
Sbjct: 61  SYAIAKSSRRTK-IPWQHDLFEDSLRAAGLPGLEAGTKLYISNLDYGVTNEDIRELFSEI 119

Query: 461 GELKRYTVHYDRNGRSSGSAEVIFTRRADALAAMKRYNNVQLDGKPMNIEIIGTSVATPX 640
           G++KRY VHY++NGR SGSAEV++TRR+DA AA+KRYNNV LDGKPM IEIIG+    P 
Sbjct: 120 GDIKRYAVHYEKNGRPSGSAEVVYTRRSDAFAAVKRYNNVLLDGKPMKIEIIGSDSDMPV 179

Query: 641 XXXXXXXXXXXXXXMRTVFMPPGSGRARTSAPVNXXXXXXXXXXXXXXXXXXXXXXXXXX 820
                          RTV M PG G AR S  +N                          
Sbjct: 180 SARVNVIGGVNGKRRRTVVMTPGVGHARGSTAINRSSSRRGRGGLSNGRGRGRAGSRGRG 239

Query: 821 XXXXKKEPIEKSADELNKELDNYHAEAMN 907
               +K+P+EKSA EL+KELDNYHAEAM+
Sbjct: 240 RGRGRKQPVEKSAVELDKELDNYHAEAMH 268


>ref|XP_002531919.1| RNA and export factor binding protein, putative [Ricinus communis]
           gi|223528429|gb|EEF30463.1| RNA and export factor
           binding protein, putative [Ricinus communis]
          Length = 268

 Score =  218 bits (554), Expect = 4e-54
 Identities = 127/269 (47%), Positives = 153/269 (56%), Gaps = 1/269 (0%)
 Frame = +2

Query: 101 MANPLDMPLDDIIKSDKXXXXXXXXXXXXXXXXXXXXXXXASNFRSAGPKGNLRVNARPS 280
           M+  +DM LDDIIK ++                             AG KG L VNARPS
Sbjct: 1   MSTSVDMSLDDIIKKNRERGRGGRGRARRGRGRGGSFS--GGRMTGAGRKGPLSVNARPS 58

Query: 281 AHTIAKTFSRNKTVPWQRGLLEDSLIAAGYSGTETGAKLYVSNLHSGVTNEDIKELFSLI 460
             +IAK   R + +PWQ  LLEDS+ AAG +G E G KLYVSNL  GV+NEDI+ELF+ I
Sbjct: 59  QFSIAKPNRRIRNLPWQHDLLEDSIRAAGITGVEVGTKLYVSNLEYGVSNEDIRELFAEI 118

Query: 461 GELKRYTVHYDRNGRSSGSAEVIFTRRADALAAMKRYNNVQLDGKPMNIEIIGTSVATPX 640
           G+LKRY VHYD+NGRS+GSAEV++TRR++A AA+K+YNNV LDGKPM IEI+G +   P 
Sbjct: 119 GDLKRYAVHYDKNGRSTGSAEVVYTRRSEAFAALKKYNNVLLDGKPMKIEIVGVTGEAP- 177

Query: 641 XXXXXXXXXXXXXXMRTVFMPPGSGRARTSAPVN-XXXXXXXXXXXXXXXXXXXXXXXXX 817
                          RTV M PG GR R  AP N                          
Sbjct: 178 ISARVNVTGINGRRKRTVVMTPGPGRGRGFAPSNRGAGQRSRGGLRNLGRGRGRGRGRGG 237

Query: 818 XXXXXKKEPIEKSADELNKELDNYHAEAM 904
                KK+P+EKSADEL+KELD YHAEAM
Sbjct: 238 HGGRGKKQPLEKSADELDKELDTYHAEAM 266


>ref|XP_003553032.1| PREDICTED: THO complex subunit 4-like [Glycine max]
          Length = 298

 Score =  197 bits (502), Expect = 4e-48
 Identities = 113/236 (47%), Positives = 136/236 (57%), Gaps = 14/236 (5%)
 Frame = +2

Query: 248 KGNLRVNARPSAHTIAKTFSRNKTVPWQRGLLEDSLIAAGYSGTETGAKLYVSNLHSGVT 427
           +G L VN RPS++ IAK+  R +  PWQ  L EDSL AAG  G E G KLYVSNL  GVT
Sbjct: 68  RGPLMVNTRPSSYAIAKSIRRARPFPWQHDLFEDSLRAAGIQGVEVGTKLYVSNLDHGVT 127

Query: 428 NEDIKELFSLIGELKRYTVHYDRNGRSSGSAEVIFTRRADALAAMKRYNNVQLDGKPMNI 607
           NEDI+ELFS +GELKR+ VHYD+NG  SGSAEV++TRR+DA AA+KRYNNV LDGKPM I
Sbjct: 128 NEDIRELFSELGELKRFAVHYDKNGHPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKI 187

Query: 608 EIIGTSVATPXXXXXXXXXXXXXXXMRTVFMPP--------------GSGRARTSAPVNX 745
           EI+G++   P                RTV M P              G+GR R   P   
Sbjct: 188 EIVGSNSELP-ISARVNVTGVNGRRKRTVVMTPRGGQAGGGPTMPNRGAGRGRRGGP--- 243

Query: 746 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKEPIEKSADELNKELDNYHAEAMNIS 913
                                        +K+ +EKSA+EL+KEL+ YHAEAMNIS
Sbjct: 244 -RSGSGRGGGGGRGRGRGSRGGGGGRGRGRKDAVEKSAEELDKELETYHAEAMNIS 298


>ref|XP_004145851.1| PREDICTED: THO complex subunit 4-like [Cucumis sativus]
          Length = 286

 Score =  192 bits (489), Expect = 1e-46
 Identities = 118/285 (41%), Positives = 147/285 (51%), Gaps = 17/285 (5%)
 Frame = +2

Query: 101 MANPLDMPLDDIIKSDKXXXXXXXXXXXXXXXXXXXXXXXASNFRSAGPKGNLRVNARPS 280
           M  PLDM L+D+IK +                              +  +G L +NAR S
Sbjct: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60

Query: 281 AHTIAKTFSRNKTVPWQRGLLEDSLIAAGYSGTETGAKLYVSNLHSGVTNEDIKELFSLI 460
           A++I K   R K V WQ  L EDSL A+G SG + G KLYVSNL  GVT EDIKELFS I
Sbjct: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI 120

Query: 461 GELKRYTVHYDRNGRSSGSAEVIFTRRADALAAMKRYNNVQLDGKPMNIEIIGTSVATPX 640
           G++KR+ +HYD+NGR SGSAEV++TRR+DA AA+KRYNNV LDGKPM IE++G +   P 
Sbjct: 121 GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMP- 179

Query: 641 XXXXXXXXXXXXXXMRTVFMPPGSGRARTSAPVN-----------------XXXXXXXXX 769
                          RTV +   SGR  TS  VN                          
Sbjct: 180 VSARINVTGTNGRNRRTVVLTSESGRNATSNVVNSFPGPSHRGGLRNARGRGRGAWSRGV 239

Query: 770 XXXXXXXXXXXXXXXXXXXXXKKEPIEKSADELNKELDNYHAEAM 904
                                +K+P+EKS+DEL+KEL+NYHAEAM
Sbjct: 240 GLGGGSGGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAM 284


>ref|XP_003537446.1| PREDICTED: uncharacterized protein LOC100820344 [Glycine max]
          Length = 298

 Score =  192 bits (487), Expect = 2e-46
 Identities = 109/231 (47%), Positives = 133/231 (57%), Gaps = 9/231 (3%)
 Frame = +2

Query: 248 KGNLRVNARPSAHTIAKTFSRNKTVPWQRGLLEDSLIAAGYSGTETGAKLYVSNLHSGVT 427
           +G L VN RPS++ IAK+  R +  PWQ  L EDSL AAG  G E G KLYVSNL  GVT
Sbjct: 69  RGPLMVNTRPSSYAIAKSIRRARPFPWQHDLFEDSLRAAGIQGVEVGTKLYVSNLDHGVT 128

Query: 428 NEDIKELFSLIGELKRYTVHYDRNGRSSGSAEVIFTRRADALAAMKRYNNVQLDGKPMNI 607
           NEDI+ELFS +GELKR+ VHYD+NG  SGSAEV++TRR+DA AA+KRYNNV LDGKPM I
Sbjct: 129 NEDIRELFSELGELKRFAVHYDKNGHPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKI 188

Query: 608 EIIGTSVATPXXXXXXXXXXXXXXXMRTVFMPPGSGRARTSAPV---------NXXXXXX 760
           EI+G++   P                RTV M    G+A     +                
Sbjct: 189 EIVGSNSELP-ISARVNVTGVNGRRKRTVVMTSRGGQAGGGPAMPTRGAGWGRRGGPRSG 247

Query: 761 XXXXXXXXXXXXXXXXXXXXXXXXKKEPIEKSADELNKELDNYHAEAMNIS 913
                                   +K+ +EKSA+EL+KEL+ YHAEAMNIS
Sbjct: 248 SGRGGAGGRGRGRGRGGAGGRGRGRKDAVEKSAEELDKELETYHAEAMNIS 298