BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00006491
         (219 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266668.1| PREDICTED: DNA gyrase subunit B, chloroplast...    98   6e-19
emb|CBI30132.3| unnamed protein product [Vitis vinifera]               98   8e-19
ref|XP_002323244.1| predicted protein [Populus trichocarpa] gi|2...    82   4e-14
ref|XP_002522164.1| DNA gyrase subunit B, putative [Ricinus comm...    81   8e-14
sp|Q5YLB4.1|GYRB_NICBE RecName: Full=DNA gyrase subunit B, chlor...    81   8e-14

>ref|XP_002266668.1| PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like
           [Vitis vinifera]
          Length = 719

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 54/70 (77%), Positives = 60/70 (85%), Gaps = 1/70 (1%)
 Frame = -1

Query: 207 STTSRTKFQSRRLVSSGFLLRNAGSPRAFMSSSMAMEAFQEETS-KAYGSEQIQVLEGLD 31
           S++ R  FQ RR VS+ FL+RNA SPRAFMSSS+A +AFQE TS KAYGSEQIQVLEGLD
Sbjct: 32  SSSFRVGFQLRR-VSNHFLIRNAASPRAFMSSSIATDAFQESTSSKAYGSEQIQVLEGLD 90

Query: 30  PVRKRPGMYI 1
           PVRKRPGMYI
Sbjct: 91  PVRKRPGMYI 100


>emb|CBI30132.3| unnamed protein product [Vitis vinifera]
          Length = 707

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 55/74 (74%), Positives = 60/74 (81%), Gaps = 1/74 (1%)
 Frame = -1

Query: 219 SSLFSTTSRTKFQSRRLVSSGFLLRNAGSPRAFMSSSMAMEAFQEETS-KAYGSEQIQVL 43
           SS+     R  FQ RR VS+ FL+RNA SPRAFMSSS+A +AFQE TS KAYGSEQIQVL
Sbjct: 16  SSVLFFKPRVGFQLRR-VSNHFLIRNAASPRAFMSSSIATDAFQESTSSKAYGSEQIQVL 74

Query: 42  EGLDPVRKRPGMYI 1
           EGLDPVRKRPGMYI
Sbjct: 75  EGLDPVRKRPGMYI 88


>ref|XP_002323244.1| predicted protein [Populus trichocarpa] gi|222867874|gb|EEF05005.1|
           predicted protein [Populus trichocarpa]
          Length = 700

 Score = 82.4 bits (202), Expect = 4e-14
 Identities = 46/70 (65%), Positives = 55/70 (78%), Gaps = 1/70 (1%)
 Frame = -1

Query: 207 STTSRTKFQSRRLVSSGFLLRNAGSPRAFMSSSMAMEAFQEET-SKAYGSEQIQVLEGLD 31
           S  SR  F +RR V S FL++N  SPRAFMS+S+A E+ QE   SKAYGS+QIQVL+GL+
Sbjct: 21  SFNSRVSFPARR-VPSRFLVQNGVSPRAFMSTSVATESQQESAGSKAYGSDQIQVLKGLE 79

Query: 30  PVRKRPGMYI 1
           PVRKRPGMYI
Sbjct: 80  PVRKRPGMYI 89


>ref|XP_002522164.1| DNA gyrase subunit B, putative [Ricinus communis]
           gi|223538602|gb|EEF40205.1| DNA gyrase subunit B,
           putative [Ricinus communis]
          Length = 732

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 47/72 (65%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
 Frame = -1

Query: 213 LFSTTSRTKFQSRRLVSSGFLLRNAGSPRAFMSSSMAMEAFQEE-TSKAYGSEQIQVLEG 37
           L S   R  FQ R  V+S   ++NAGS RAFMSSS A E FQE  +SKAYGS+QIQVL+G
Sbjct: 43  LVSFKPRVSFQWRA-VTSRVTVQNAGSARAFMSSSTATEPFQESASSKAYGSDQIQVLKG 101

Query: 36  LDPVRKRPGMYI 1
           L+PVRKRPGMYI
Sbjct: 102 LEPVRKRPGMYI 113


>sp|Q5YLB4.1|GYRB_NICBE RecName: Full=DNA gyrase subunit B, chloroplastic/mitochondrial;
           Flags: Precursor gi|38017095|gb|AAR07943.1| DNA gyrase B
           subunit [Nicotiana benthamiana]
          Length = 731

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 44/59 (74%), Positives = 46/59 (77%), Gaps = 1/59 (1%)
 Frame = -1

Query: 174 RLVSSGFLLRNAGSPRAFMSSSMAMEAFQEET-SKAYGSEQIQVLEGLDPVRKRPGMYI 1
           R +S   L+RN  S RAFMSSS   EAFQE T SK YGSEQIQVLEGLDPVRKRPGMYI
Sbjct: 54  RRLSDAILIRNMVSLRAFMSSSTTTEAFQENTKSKGYGSEQIQVLEGLDPVRKRPGMYI 112