BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00006300
         (3452 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...  1416   0.0  
ref|XP_002324295.1| rna-dependent RNA polymerase [Populus tricho...  1399   0.0  
ref|XP_002308662.1| rna-dependent RNA polymerase [Populus tricho...  1386   0.0  
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...  1359   0.0  
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    1347   0.0  

>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score = 1416 bits (3666), Expect = 0.0
 Identities = 695/1025 (67%), Positives = 830/1025 (80%), Gaps = 4/1025 (0%)
 Frame = +1

Query: 1    PFDGTCKILFTKETAFSFKSTAKQAVLKCNFKLEFFIGEIIEVKQYKNISALIMLVQLSS 180
            PFDGTCK LFTK+TAFSFK   K AV+KCNFK+EF + EI EV+Q +++S+LI+L+QLSS
Sbjct: 165  PFDGTCKFLFTKDTAFSFKGMPKHAVIKCNFKVEFLVREINEVRQRRDMSSLILLLQLSS 224

Query: 181  APRVFYRTADDDIYDSVPFDLLDDEDPWIRTTDFTPFGVIGRSNSYLISMSPRCGPKLSK 360
            +P V+YRTADDDI ++VPFDLLDD+DPWIRTTDFT  G IGR NSY IS+ PR G KL K
Sbjct: 225  SPFVYYRTADDDIEETVPFDLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKK 284

Query: 361  AMKYFEERRVPCR--SFLQLLKVLEEPSAHVPPNS-FFCVPCGDDISFEVIYMVNAVMHK 531
            AM Y   RRV     S    L+V +EP   +P +  FFC+   + I F V+++VNAVMHK
Sbjct: 285  AMDYLRARRVNVLEDSPKWQLRVRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHK 344

Query: 532  GIINQFQLSDKFFELLRSQSKEVNIKALTHMYCYRRPVFDAYKRLKIVQNWLLKNPKGIK 711
            GIINQ QLSDKFF+LLRSQ K++NI AL H+  YR PVFDAY+RLK+V  WLLKNPK +K
Sbjct: 345  GIINQHQLSDKFFDLLRSQQKDINIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLK 404

Query: 712  GSRVLDHNVEVHRLIITPTRAYCLPPEVELSNRVLRKYKESVDRFLRVTFMDEGFDQLNI 891
              + LD  VEV RL+ITP++AYCLPPEVELSNRVLR YKE  DRFLRVTFMDEG   +N 
Sbjct: 405  SPKELDDIVEVRRLVITPSKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINA 464

Query: 892  NVLSYYVAPIVKDITSNSFPQKTAVFKRVKTILSEGFYLCGRKYSFLAFSSNQLRDRSAW 1071
            NVL+YYVAPIVK ITSNSFPQKT VFKRVKTIL++GFYLCGRKYSFLAFSSNQLRDRSAW
Sbjct: 465  NVLNYYVAPIVKVITSNSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAW 524

Query: 1072 FFAEDKKINVTDIKKWMGKFKNKNVAKCAARMGQCFSSTYETVKVPSKEVNFDFPDIERN 1251
            FFAEDKK +V  IK WMGKF N+NVAKCAARMGQCFSSTY TV+VPS EV  + PDI+RN
Sbjct: 525  FFAEDKKTSVRAIKSWMGKFTNRNVAKCAARMGQCFSSTYATVEVPSWEVK-ELPDIKRN 583

Query: 1252 DFVFSDGIGILTPDLAAEVAEKLQLTETPSAYQIRYAGCKGVIASWPGKDDGIRLYLRPS 1431
             + FSDGIG + PDLA EVAEKL+L  TPSAYQIRYAGCKGV+A WP  +DGIRL  RPS
Sbjct: 584  GYDFSDGIGKIVPDLAMEVAEKLKLEGTPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPS 643

Query: 1432 MNKFESSHNIIEVITWTRFQPGFLNRQVVTLLSSLGVPNEVFSKLQDSMVHNLDQMLTNP 1611
            MNKF S H I+E+ +WTRFQPGFLNRQ+VTLLS+L VP+++F K+Q+SM+  L+QMLT+ 
Sbjct: 644  MNKFLSDHTILEICSWTRFQPGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDT 703

Query: 1612 DIALDVIISSCGDEGNTAALMISGGFKPQIEPHLKEVISCIRASQLGDLLDKARIFVSSA 1791
            D+A DV+I+SC ++GNTAA+M+S GFKPQ EPHL+ +++CIRA+Q   L +KARIFV S 
Sbjct: 704  DVAFDVLIASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSG 763

Query: 1792 QWLMGCLDELGLLEQGQCFVQVSSPSLEDCFVKHGFKLSGPNSNLKVIKGTVVMAKNPCL 1971
            +WLMGCLDELG+LEQGQCF+QVSSPSLE+CF+KHG + S    NLKVIKG V +AKNPCL
Sbjct: 764  RWLMGCLDELGVLEQGQCFIQVSSPSLENCFLKHGSRFSA-QKNLKVIKGIVAIAKNPCL 822

Query: 1972 HPGDIRVLEAVDIPALHHLVDCLVFPQNGDRPHSNEASGSDLDGDLYFVTWDGNLIPPSR 2151
            HPGD+R+LEAVD P L HLVDCLVFPQ GDRPHSNEASGSDLDGDLYFVTW+  LIPPS+
Sbjct: 823  HPGDVRILEAVDAPGLEHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSK 882

Query: 2152 ESWPAMDYSPAEAKTLPRAVTYQDIIEFFSRNMVNENLGVICNAHVVHADQSEYGAMDEK 2331
            +SWP M Y  AEAK L R VT  DII+FF++NMVNENLG ICNAHVVHAD+SEYGA+DE 
Sbjct: 883  QSWPPMQYDSAEAKALAREVTSLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEA 942

Query: 2332 CIQLAELAATAVDSPKTGKFVIMPHLLKPKIYPDFMGKEDFMSYKSKKILGVLYRKIKNA 2511
            C+ LAE AATAVD PKTGK V +P  LKPK+YPDFMGKE+F +Y+S KILG +YR+IK+A
Sbjct: 943  CLDLAERAATAVDFPKTGKLVTLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDA 1002

Query: 2512 YEEEVLSSLDSPYDPEGIPYDADIEIACSNDLIQEAWIHKCSYDGKLNALLGQYKVHSEA 2691
            Y E+V  S +  +  + +P+D D+ I  S D I +AWIHKCSYDG+LN LLGQYKV  E 
Sbjct: 1003 YNEDVSESSEQIFGADKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREE 1062

Query: 2692 EVVSGHVWSMPRYNNRKQRELKEKLKNAYNALKKEFKNVFENVNPDLLEAQGDQKIQMYE 2871
            EVV+GHVWSMP+Y +RKQ EL E+LK+AY++LKKEF+ +FE +N D  +   D+K ++YE
Sbjct: 1063 EVVTGHVWSMPKYKSRKQGELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYE 1122

Query: 2872 QKASAWYQVTYHPQWVKKSLELRRIEE-DDDRVPAFLSFAWIPAEYLVRIKIRQLGIDNL 3048
            QKASAWYQVTYHP WVKKSLEL+  +E   +RV   LSFAWI A+YL RIKIR+ G  N+
Sbjct: 1123 QKASAWYQVTYHPTWVKKSLELQNPDEVFGERV--MLSFAWITADYLARIKIRRKGTGNV 1180

Query: 3049 NTCQP 3063
            ++ +P
Sbjct: 1181 DSSKP 1185


>ref|XP_002324295.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1200

 Score = 1399 bits (3621), Expect = 0.0
 Identities = 667/1026 (65%), Positives = 829/1026 (80%), Gaps = 5/1026 (0%)
 Frame = +1

Query: 1    PFDGTCKILFTKETAFSFKSTAKQAVLKCNFKLEFFIGEIIEVKQYKNISALIMLVQLSS 180
            PFDGTCK  F++ TAFS KST++ AV+KC+FK+EF + +I E+ QY   S L++L+QL+S
Sbjct: 165  PFDGTCKFCFSRNTAFSLKSTSEHAVIKCDFKVEFLVRDINEIIQYTETSCLVLLLQLAS 224

Query: 181  APRVFYRTADDDIYDSVPFDLLDDEDPWIRTTDFTPFGVIGRSNSYLISMSPRCGPKLSK 360
            AP V+YRTADDDI   VPFDLLDD+DPWIRTTDFT  G IGR +SY +S+ PR G KL K
Sbjct: 225  APWVWYRTADDDIEAWVPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRK 284

Query: 361  AMKYFEERRVPC---RSFLQLLKVLEEPSAHVPPNS-FFCVPCGDDISFEVIYMVNAVMH 528
            A+KY +ERRV      +  + +++L+EP   +P +  FFC+   + I+FEV+++VNAVMH
Sbjct: 285  AVKYLKERRVQVLQEENHRRRIRILDEPDFGMPMSDPFFCIHHKEGIAFEVLFLVNAVMH 344

Query: 529  KGIINQFQLSDKFFELLRSQSKEVNIKALTHMYCYRRPVFDAYKRLKIVQNWLLKNPKGI 708
            KGI NQ QLS+ FF+LLR+Q  EVN+ AL H+  YRRPVF+AY+RLK VQ WLLKNP   
Sbjct: 345  KGIFNQHQLSNDFFDLLRNQHTEVNVSALKHICTYRRPVFNAYRRLKAVQEWLLKNPNLF 404

Query: 709  KGSRVLDHNVEVHRLIITPTRAYCLPPEVELSNRVLRKYKESVDRFLRVTFMDEGFDQLN 888
            K  + L   VE+ RL+ITPT+AYCLPPEVELSNRVLRKYK+  DRFLRVTFMDEG  ++N
Sbjct: 405  KNPKQLGDVVEIRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMN 464

Query: 889  INVLSYYVAPIVKDITSNSFPQKTAVFKRVKTILSEGFYLCGRKYSFLAFSSNQLRDRSA 1068
             NVL+YYVAPIV+DITSNSFPQKT +FKRV++IL+EGFYLCGR+YSFLAFS+NQLRD+SA
Sbjct: 465  SNVLNYYVAPIVRDITSNSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSA 524

Query: 1069 WFFAEDKKINVTDIKKWMGKFKNKNVAKCAARMGQCFSSTYETVKVPSKEVNFDFPDIER 1248
            WFF+E++ I+V D+K WMGKF N+N+AKCAARMGQCFSSTY T++VP +EVN D PDIER
Sbjct: 525  WFFSEERNISVLDVKSWMGKFTNRNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIER 584

Query: 1249 NDFVFSDGIGILTPDLAAEVAEKLQLT-ETPSAYQIRYAGCKGVIASWPGKDDGIRLYLR 1425
            N +VFSDGIGI+TPDLA EVAEKL+L  + P AYQIRYAGCKGV+A WPGK DG+RL LR
Sbjct: 585  NGYVFSDGIGIITPDLAREVAEKLKLDIDPPCAYQIRYAGCKGVVACWPGKGDGVRLSLR 644

Query: 1426 PSMNKFESSHNIIEVITWTRFQPGFLNRQVVTLLSSLGVPNEVFSKLQDSMVHNLDQMLT 1605
            PSMNKF+S+H  +E+ +WTRFQPGFLNRQ++TLLS+L VP+ VF K+Q++MV  L+QM  
Sbjct: 645  PSMNKFQSNHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFV 704

Query: 1606 NPDIALDVIISSCGDEGNTAALMISGGFKPQIEPHLKEVISCIRASQLGDLLDKARIFVS 1785
            N D+A DV+ +SC D+GN AA+M+S GFKP  EPHL+ +++C+RA+QL DL +K RIFV 
Sbjct: 705  NSDVAFDVLTASCADQGNVAAIMLSAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFVP 764

Query: 1786 SAQWLMGCLDELGLLEQGQCFVQVSSPSLEDCFVKHGFKLSGPNSNLKVIKGTVVMAKNP 1965
            S +WLMGCLDELG+LEQGQCF+QVS+ SLE CF+KHG K S    NL+VIKGTVV+AKNP
Sbjct: 765  SGRWLMGCLDELGMLEQGQCFIQVSNSSLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNP 824

Query: 1966 CLHPGDIRVLEAVDIPALHHLVDCLVFPQNGDRPHSNEASGSDLDGDLYFVTWDGNLIPP 2145
            CLHPGD+RVLEAVD+P LHHL DCLVFPQ G+RPH+NEASGSDLDGDLYFVTWD NLIPP
Sbjct: 825  CLHPGDVRVLEAVDVPGLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPP 884

Query: 2146 SRESWPAMDYSPAEAKTLPRAVTYQDIIEFFSRNMVNENLGVICNAHVVHADQSEYGAMD 2325
            S+ SW  M Y  AEAK L R V +QDIIEFF++NMVN+NLG ICNAHVVHAD SEYGA D
Sbjct: 885  SKRSWIPMQYDAAEAKLLARPVNHQDIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATD 944

Query: 2326 EKCIQLAELAATAVDSPKTGKFVIMPHLLKPKIYPDFMGKEDFMSYKSKKILGVLYRKIK 2505
            + C+ LAELAATAVD PKTGK V MP  LKPK+YPDFMGKE++ SYKS+KILG LYR+IK
Sbjct: 945  KNCLTLAELAATAVDFPKTGKVVSMPPYLKPKMYPDFMGKEEYQSYKSEKILGRLYRQIK 1004

Query: 2506 NAYEEEVLSSLDSPYDPEGIPYDADIEIACSNDLIQEAWIHKCSYDGKLNALLGQYKVHS 2685
            +AY+E+V +S +    P  IPYD+D+E+  ++D I +AW  KCSYDG+LN LL QYKV  
Sbjct: 1005 DAYDEDVAASSELNLVPGDIPYDSDLEVVGASDYISDAWDQKCSYDGQLNGLLSQYKVKR 1064

Query: 2686 EAEVVSGHVWSMPRYNNRKQRELKEKLKNAYNALKKEFKNVFENVNPDLLEAQGDQKIQM 2865
            E EVV+GH+WSMP+Y++RKQ ELK++LK++YN+LKKEF+ +FE ++ +  + +  +K ++
Sbjct: 1065 EEEVVTGHIWSMPKYSSRKQGELKDRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKL 1124

Query: 2866 YEQKASAWYQVTYHPQWVKKSLELRRIEEDDDRVPAFLSFAWIPAEYLVRIKIRQLGIDN 3045
            YEQKASAWYQV YHP WVKKSLEL+  + D       LSFAWI A+YL RIKIR     N
Sbjct: 1125 YEQKASAWYQVVYHPHWVKKSLELQ--DPDGAGTSVMLSFAWIAADYLARIKIRHRETGN 1182

Query: 3046 LNTCQP 3063
            +++ +P
Sbjct: 1183 VDSAKP 1188


>ref|XP_002308662.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1198

 Score = 1386 bits (3588), Expect = 0.0
 Identities = 666/1024 (65%), Positives = 821/1024 (80%), Gaps = 3/1024 (0%)
 Frame = +1

Query: 1    PFDGTCKILFTKETAFSFKSTAKQAVLKCNFKLEFFIGEIIEVKQYKNISALIMLVQLSS 180
            PFDGTC+  F++ TAFSFKSTA+ AV+KC+FK+EF + +I E+KQY   S L++L+QL+S
Sbjct: 165  PFDGTCRFCFSRNTAFSFKSTAEHAVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQLAS 224

Query: 181  APRVFYRTADDDIYDSVPFDLLDDEDPWIRTTDFTPFGVIGRSNSYLISMSPRCGPKLSK 360
            APRV+YRTADDDI  SVPFDLLDD+DPWIRTTDFT  G IGR +SY +S+ PR GPKL K
Sbjct: 225  APRVWYRTADDDIEVSVPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRK 284

Query: 361  AMKYFEERRVPCRSFLQLLKVLEEPSAHVP-PNSFFCVPCGDDISFEVIYMVNAVMHKGI 537
            A+ + +ERRV      + +++ +EP   +P  + FFC+   + I+F+V+++VNAVMHKGI
Sbjct: 285  AVDFLKERRVQEEYLRRPIRIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGI 344

Query: 538  INQFQLSDKFFELLRSQSKEVNIKALTHMYCYRRPVFDAYKRLKIVQNWLLKNPKGIKGS 717
             NQ QLS+ FF+LLR+Q  EVN+ AL H+Y YRRPVFDAYK+LK+ Q WLLKNPK  K  
Sbjct: 345  FNQHQLSNDFFDLLRNQPTEVNVAALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQ 404

Query: 718  RVLDHNVEVHRLIITPTRAYCLPPEVELSNRVLRKYKESVDRFLRVTFMDEGFDQLNINV 897
            + LD   E+ RL+ITPT+AYCLPPEVELSNRVLRKYK+  DRFLRVTFMDEG   +N N 
Sbjct: 405  KKLDDIAEIRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNA 464

Query: 898  LSYYVAPIVKDITSNSFPQKTAVFKRVKTILSEGFYLCGRKYSFLAFSSNQLRDRSAWFF 1077
            L+Y+ APIV+ ITS SFPQKT +FKRV++IL+EGFYLCGR+YSFLAFSSNQLRDRSAWFF
Sbjct: 465  LNYFAAPIVRAITSYSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFF 524

Query: 1078 AEDKKINVTDIKKWMGKFKNKNVAKCAARMGQCFSSTYETVKVPSKEVNFDFPDIERNDF 1257
            AED+ INV  IK WMGKF NKN+AKCAARMGQCFSSTY T++VP +EVN D PDI+RN +
Sbjct: 525  AEDRNINVMAIKSWMGKFTNKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGY 584

Query: 1258 VFSDGIGILTPDLAAEVAEKLQLT-ETPSAYQIRYAGCKGVIASWPGKDDGIRLYLRPSM 1434
             FSDGIG++TPDLA EVAEKL+   + P AYQIRYAGCKGV+A WP + DGIRL LR SM
Sbjct: 585  DFSDGIGMITPDLAREVAEKLKFDFDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSM 644

Query: 1435 NKFESSHNIIEVITWTRFQPGFLNRQVVTLLSSLGVPNEVFSKLQDSMVHNLDQMLTNPD 1614
            NKF+S+H I+E+ +WTRFQPGFLNRQ++TLLS+L VP+ VF K+Q+ MV  L+QML + D
Sbjct: 645  NKFQSNHTILEICSWTRFQPGFLNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSD 704

Query: 1615 IALDVIISSCGDEGNTAALMISGGFKPQIEPHLKEVISCIRASQLGDLLDKARIFVSSAQ 1794
            +A DV+ +SC ++GN AA+M+S GFKPQ EPHL+ +++C+RA+QL  L +KARIFV S +
Sbjct: 705  VAFDVLTASCAEQGNVAAIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGR 764

Query: 1795 WLMGCLDELGLLEQGQCFVQVSSPSLEDCFVKHGFKLSGPNSNLKVIKGTVVMAKNPCLH 1974
            WLMGCLDELG+LEQGQCF+QVS+  LE+CFVKHG K S    NL+V+KGTVV+AKNPCLH
Sbjct: 765  WLMGCLDELGVLEQGQCFIQVSNSYLENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLH 824

Query: 1975 PGDIRVLEAVDIPALHHLVDCLVFPQNGDRPHSNEASGSDLDGDLYFVTWDGNLIPPSRE 2154
            PGDIR+LEAVD P LHHL DCLVFPQ G+RPH+NEASGSDLDGDLYFVTWD NLIPPS+ 
Sbjct: 825  PGDIRILEAVDAPGLHHLYDCLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKR 884

Query: 2155 SWPAMDYSPAEAKTLPRAVTYQDIIEFFSRNMVNENLGVICNAHVVHADQSEYGAMDEKC 2334
            SW  M Y  AEAK L R V +QDI+EFF++NM NENLG ICNAHVV AD SEYGA+DEKC
Sbjct: 885  SWIPMQYDAAEAKQLTRPVNHQDIVEFFAKNMANENLGAICNAHVVRADLSEYGALDEKC 944

Query: 2335 IQLAELAATAVDSPKTGKFVIMPHLLKPKIYPDFMGKEDFMSYKSKKILGVLYRKIKNAY 2514
            + LAELAATAVD PKTGK V MP  LKPKIYPDFMGKE+  SYKSKKILG LYR+IK+AY
Sbjct: 945  LTLAELAATAVDFPKTGKIVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAY 1004

Query: 2515 -EEEVLSSLDSPYDPEGIPYDADIEIACSNDLIQEAWIHKCSYDGKLNALLGQYKVHSEA 2691
             +++V +S +  +    IPYD D+E+  + D I +AW  KCSYDG+LN LL QYKV  E 
Sbjct: 1005 DDDDVAASSELNFVRGDIPYDLDLEVLGATDFISDAWDRKCSYDGQLNGLLAQYKVKREE 1064

Query: 2692 EVVSGHVWSMPRYNNRKQRELKEKLKNAYNALKKEFKNVFENVNPDLLEAQGDQKIQMYE 2871
            EVV+GHVWSMP+ ++RKQ +LKE+LK++YN LK+EF+ VFE ++ D  +   D+K  +YE
Sbjct: 1065 EVVTGHVWSMPKGSSRKQGDLKERLKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYE 1124

Query: 2872 QKASAWYQVTYHPQWVKKSLELRRIEEDDDRVPAFLSFAWIPAEYLVRIKIRQLGIDNLN 3051
            +KASAWYQVTYHP W++KSLEL+  + D   +   LSFAWI A+YL RIKIR   I N++
Sbjct: 1125 RKASAWYQVTYHPHWIQKSLELQ--DSDGAGISVMLSFAWIAADYLARIKIRHSRIGNVD 1182

Query: 3052 TCQP 3063
            + +P
Sbjct: 1183 SAKP 1186


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score = 1359 bits (3518), Expect = 0.0
 Identities = 661/1029 (64%), Positives = 802/1029 (77%), Gaps = 8/1029 (0%)
 Frame = +1

Query: 1    PFDGTCKILFTKETAFSFKSTAKQAVLKCNFKLEFFIGEIIEVKQYKNISALIMLVQLSS 180
            PFDG CK  FT++TAFSFK T + AV++C+FKLEF + +I E+KQY + S L++L+QL+S
Sbjct: 165  PFDGKCKFCFTRDTAFSFKGTTEHAVIRCDFKLEFLVRDINEIKQYTDTSCLVILLQLAS 224

Query: 181  APRVFYRTADDDIYDSVPFDLLDDEDPWIRTTDFTPFGVIGRSNSYLISMSPRCGPKLSK 360
            AP V+YRTADDDI   VPFDLLDD+DPWIRTTDFTP G IGR NSY +S+ PR G KL +
Sbjct: 225  APSVWYRTADDDIEVLVPFDLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLKR 284

Query: 361  AMKYFEERRVPCRSFLQLLKVLEEPSAHVPPNS-FFCVPCGDDISFEVIYMVNAVMHKGI 537
            A+ +  ERRV      + L V  EP   +P +  FFC+   + + F ++++VNAVMHKGI
Sbjct: 285  ALNFLRERRVQEDCLRRPLHVTAEPEYEMPMSDPFFCIHHEEGVDFNLMFLVNAVMHKGI 344

Query: 538  INQFQLSDKFFELLRSQSKEVNIKALTHMYCYRRPVFDAYKRLKIVQNWLLKNPKGIKGS 717
             NQ QLSD FF+LLR+Q  +VNI AL H+  Y+ PVFDA+KRLK VQ WLLKNPK  + S
Sbjct: 345  FNQHQLSDSFFDLLRNQPLDVNIAALRHICSYKHPVFDAHKRLKAVQQWLLKNPKLFRSS 404

Query: 718  RVLDHNVEVHRLIITPTRAYCLPPEVELSNRVLRKYKESVDRFLRVTFMDEGFDQLNINV 897
            + LD  VE+ RL ITPTRAYCLPPEVELSNRVLR+YK+  D+FLRVTFMDEG   +N N 
Sbjct: 405  KQLDDIVEIRRLAITPTRAYCLPPEVELSNRVLRRYKDIADQFLRVTFMDEGLQTMNANT 464

Query: 898  LSYYVAPIVKDITSNSFPQKTAVFKRVKTILSEGFYLCGRKYSFLAFSSNQLRDRSAWFF 1077
            L+YY APIV+DITSNSF QKT +FKRVK+IL++GFYLCGRKYSFLAFSSNQLRDRSAWFF
Sbjct: 465  LTYYCAPIVRDITSNSFSQKTRIFKRVKSILTDGFYLCGRKYSFLAFSSNQLRDRSAWFF 524

Query: 1078 AEDKKINVTDIKKWMGKFKNKNVAKCAARMGQCFSSTYETVKVPSKEVNFDFPDIERNDF 1257
            AED K +V+ I+ WMGKF N+N+AKCAARMGQCFSSTY TV+VPS E   D PDIERN++
Sbjct: 525  AEDGKTSVSKIRNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSAEAILDLPDIERNNY 584

Query: 1258 VFSDGIGILTPDLAAEVAEKLQL-TETPSAYQIRYAGCKGVIASWPGKDDGIRLYLRPSM 1434
            +FSDGIG++TPDLA EVAEKL+L    P AYQIRYAGCKGV+A WP   DGIRL LR SM
Sbjct: 585  IFSDGIGMITPDLAKEVAEKLKLEVNPPCAYQIRYAGCKGVVACWPAHIDGIRLSLRVSM 644

Query: 1435 NKFESSHNIIEVITWTRFQPGFLNRQVVTLLSSLGVPNEVFSKLQDSMVHNLDQMLTNPD 1614
            NKF S+H  +E+ +WTRFQPGFLNRQ++TLLS+L VP+E+F K+Q  MV  L+QM  + D
Sbjct: 645  NKFHSNHTTLEICSWTRFQPGFLNRQIITLLSTLDVPDEIFWKMQIVMVSKLNQMFMDAD 704

Query: 1615 IALDVIISSCGDEGNTAALMISGGFKPQIEPHLKEVISCIRASQLGDLLDKARIFVSSAQ 1794
            +A DV+ +SC ++GNTAA+M+S GF P+ EPHL  +++CIRA+QL  L +K RIFV S +
Sbjct: 705  VAFDVVTASCAEQGNTAAIMLSAGFNPKTEPHLCGMLTCIRAAQLWGLREKTRIFVPSGR 764

Query: 1795 WLMGCLDELGLLEQGQCFVQVSSPSLEDCFVKHGFKLSGPNSNLKVIKGTVVMAKNPCLH 1974
            WLMGCLDELG+LE GQCF+QVS+PSLE CF KHG + S     L+V+KGTVV+AKNPCLH
Sbjct: 765  WLMGCLDELGVLEHGQCFIQVSNPSLESCFWKHGSRFSESKKKLQVVKGTVVVAKNPCLH 824

Query: 1975 PGDIRVLEAVDIPALHHLVDCLVFPQNGDRPHSNEASGSDLDGDLYFVTWDGNLIPPSRE 2154
            PGDIR+LEAVD P LHHL DCLVFPQ GDRPH+NEASGSDLDGDLYFVTWD NLIPPS+ 
Sbjct: 825  PGDIRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKR 884

Query: 2155 SWPAMDYSPAEAKTLPRAVTYQDIIEFFSRNMVNENLGVICNAHVVHADQSEYGAMDEKC 2334
            SW  M Y  AEAK L R V +QDII+FF++NMVNENLG ICNAHVVHAD SEYGA+DE C
Sbjct: 885  SWLPMQYDAAEAKQLNRPVNHQDIIDFFAKNMVNENLGAICNAHVVHADLSEYGALDENC 944

Query: 2335 IQLAELAATAVDSPKTGKFVIMPHLLKPKIYPDFMGKEDFMSYKSKKILGVLYRKIKNAY 2514
            I+LAELAATAVD PKTGK V MP  LKPK+YPDFMGKED+ SY S KILG LYR++K+ Y
Sbjct: 945  IKLAELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEDYQSYNSNKILGRLYRQVKDDY 1004

Query: 2515 EEEVLSSLDSPYDPE------GIPYDADIEIACSNDLIQEAWIHKCSYDGKLNALLGQYK 2676
             ++     D+    E       IPYD D+E++ S+D I +AW  KCSYDG+L  LL QYK
Sbjct: 1005 NDDDDDDDDAATSSELNLVRGDIPYDKDLEVSGSSDYILDAWDQKCSYDGQLKGLLAQYK 1064

Query: 2677 VHSEAEVVSGHVWSMPRYNNRKQRELKEKLKNAYNALKKEFKNVFENVNPDLLEAQGDQK 2856
            V  E EVV+GH+WSMP+ N+RKQ ELKE+LK +Y++LKKEF+ VFE ++ D  +   D+K
Sbjct: 1065 VKREEEVVTGHIWSMPKCNSRKQGELKERLKQSYHSLKKEFRQVFEKMDSDFEQLTEDEK 1124

Query: 2857 IQMYEQKASAWYQVTYHPQWVKKSLELRRIEEDDDRVPAFLSFAWIPAEYLVRIKIRQLG 3036
              +YEQKASAWYQV YHP+WV KS+EL+  E D     + LSFAWI A+YL RIKIR  G
Sbjct: 1125 NLLYEQKASAWYQVAYHPKWVNKSMELQ--EPDAAGCASMLSFAWIAADYLARIKIRCRG 1182

Query: 3037 IDNLNTCQP 3063
             D ++T +P
Sbjct: 1183 FDGVDTSKP 1191


>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1347 bits (3487), Expect = 0.0
 Identities = 666/1025 (64%), Positives = 807/1025 (78%), Gaps = 4/1025 (0%)
 Frame = +1

Query: 1    PFDGTCKILFTKETAFSFKSTAKQAVLKCNFKLEFFIGEIIEVKQYKNISALIMLVQLSS 180
            PF+GTCKILFTK+TAFSF+  A+ A++KCNFK+EF + EI E+K+ K+ ++L++L QL+S
Sbjct: 164  PFNGTCKILFTKDTAFSFRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLAS 223

Query: 181  APRVFYRTADDDIYDSVPFDLLDDEDPWIRTTDFTPFGVIGRSNSYLISMSPRCGPKLSK 360
            +P VFYRTADDDI +SV FDLLDD+D WIRTTD T  G IGR N+Y IS+ PR GP   K
Sbjct: 224  SPLVFYRTADDDIEESVAFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEK 283

Query: 361  AMKYFEERRVPCRSFL--QLLKVLEEPSAHVPPNS-FFCVPCGDDISFEVIYMVNAVMHK 531
            AM YF  RRVP       ++L+V +EP   V  +  FFC    + ISF V+++VNAV+HK
Sbjct: 284  AMAYFSFRRVPMVEMCNRKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFRVLFLVNAVLHK 342

Query: 532  GIINQFQLSDKFFELLRSQSKEVNIKALTHMYCYRRPVFDAYKRLKIVQNWLLKNPKGIK 711
            GI+NQ Q++++FF LLRS  +EVN  AL HM+ Y+ PV DA ++L  +Q WLLKNPK + 
Sbjct: 343  GIVNQHQMANEFFYLLRSHQEEVNSAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLD 402

Query: 712  GSRVLDHNVEVHRLIITPTRAYCLPPEVELSNRVLRKYKESVDRFLRVTFMDEGFDQLNI 891
             +  LD  VEV RL+ITPT+AYCLPP VELSNRVLR YK   DRFLRVTFMDEG   LN 
Sbjct: 403  RTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNR 462

Query: 892  NVLSYYVAPIVKDITSNSFPQKTAVFKRVKTILSEGFYLCGRKYSFLAFSSNQLRDRSAW 1071
            NVL+YY A IV++ITSNS PQ+TA+F+RVK+ILS+GF+LCGRKYSFLAFS+NQLRDRSAW
Sbjct: 463  NVLTYYAATIVREITSNSNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAW 522

Query: 1072 FFAEDKKINVTDIKKWMGKFKNKNVAKCAARMGQCFSSTYETVKVPSKEVNFDFPDIERN 1251
            FFAED KI V  I  WMG+F N+NVAKCAARMGQCFSSTY TV+VPS EVN + PDIERN
Sbjct: 523  FFAEDPKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERN 582

Query: 1252 DFVFSDGIGILTPDLAAEVAEKLQLT-ETPSAYQIRYAGCKGVIASWPGKDDGIRLYLRP 1428
             +VFSDGIG+++ DLA EVAEKL L+   PSAYQIRYAGCKGV+A WP K+DGIRL LRP
Sbjct: 583  GYVFSDGIGMISADLAIEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRP 642

Query: 1429 SMNKFESSHNIIEVITWTRFQPGFLNRQVVTLLSSLGVPNEVFSKLQDSMVHNLDQMLTN 1608
            SM KF+S+H I+E+ +WTRFQPGFLNRQ+VTLLSSL V + +F ++Q  M+  LD+ML +
Sbjct: 643  SMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVD 702

Query: 1609 PDIALDVIISSCGDEGNTAALMISGGFKPQIEPHLKEVISCIRASQLGDLLDKARIFVSS 1788
             D+A DVI +SC + GNTAALM+S GFKPQ EPHL+ ++S IRASQLGDL +KARIFV S
Sbjct: 703  SDVAFDVITASCAEAGNTAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPS 762

Query: 1789 AQWLMGCLDELGLLEQGQCFVQVSSPSLEDCFVKHGFKLSGPNSNLKVIKGTVVMAKNPC 1968
             +WLMGCLDELG LEQGQCF+QVSSPSLE+CFVKHG K S    NL+V+KG VV+AKNPC
Sbjct: 763  GRWLMGCLDELGELEQGQCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPC 822

Query: 1969 LHPGDIRVLEAVDIPALHHLVDCLVFPQNGDRPHSNEASGSDLDGDLYFVTWDGNLIPPS 2148
            LHPGD+R+LEAVD+P+L HL DCLVFPQ GDRPHSNEASGSDLDGDLYFVTWD NLIPPS
Sbjct: 823  LHPGDVRILEAVDVPSLSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPS 882

Query: 2149 RESWPAMDYSPAEAKTLPRAVTYQDIIEFFSRNMVNENLGVICNAHVVHADQSEYGAMDE 2328
            ++SW  M+Y PAE K L R V + DII+FFS+NMV E+LG ICNAHVVHAD SE+GA+DE
Sbjct: 883  KKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDE 942

Query: 2329 KCIQLAELAATAVDSPKTGKFVIMPHLLKPKIYPDFMGKEDFMSYKSKKILGVLYRKIKN 2508
            KC++LAELAA AVD PKTGK V MP  LKPK+YPDFMGKE+F SYKSKKILG LYR++K+
Sbjct: 943  KCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKD 1002

Query: 2509 AYEEEVLSSLDSPYDPEGIPYDADIEIACSNDLIQEAWIHKCSYDGKLNALLGQYKVHSE 2688
              + E   S      P+ IPYD  +EI  S   I +AW  KCSYDG+LN LLGQYKV+ E
Sbjct: 1003 VCDAEGEVSAGLEVVPKDIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNRE 1062

Query: 2689 AEVVSGHVWSMPRYNNRKQRELKEKLKNAYNALKKEFKNVFENVNPDLLEAQGDQKIQMY 2868
             EVV+G++WSMP+YN +KQ ELKE+LK+AYN L+KEF+NVFE + PD      D+K  MY
Sbjct: 1063 EEVVTGYIWSMPKYNAKKQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMY 1122

Query: 2869 EQKASAWYQVTYHPQWVKKSLELRRIEEDDDRVPAFLSFAWIPAEYLVRIKIRQLGIDNL 3048
            E+KASAWYQVTYHP WV +SLEL+  +   + V   LSFAWI A+YL RIKIR   +   
Sbjct: 1123 ERKASAWYQVTYHPHWVARSLELQLADAVSNTV--MLSFAWIAADYLARIKIRHRRLQYS 1180

Query: 3049 NTCQP 3063
            ++ +P
Sbjct: 1181 DSTKP 1185