BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00006286
         (3446 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAU25941.1| cytochrome b [Vitis vinifera]                          723   0.0  
ref|YP_004927538.1| cob (mitochondrion) [Brassica carinata] gi|3...   721   0.0  
ref|XP_002333252.1| predicted protein [Populus trichocarpa] gi|2...   721   0.0  
ref|YP_717171.1| apocytochrome b [Brassica napus] gi|37591119|db...   719   0.0  
sp|P42792.2|CYB_ARATH RecName: Full=Cytochrome b; AltName: Full=...   717   0.0  

>gb|AAU25941.1| cytochrome b [Vitis vinifera]
          Length = 393

 Score =  723 bits (1865), Expect = 0.0
 Identities = 356/414 (85%), Positives = 360/414 (86%)
 Frame = -3

Query: 1857 ITIRNQRFSLLKQPISSTLNQHLIDYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHY 1678
            +TIRNQRFSLLKQPISSTLNQHLIDYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHY
Sbjct: 1    MTIRNQRFSLLKQPISSTLNQHLIDYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHY 60

Query: 1677 TPHVDLAFNSVEHVMRDVEGGWLLRYMHANGASMFFIVVHLHIFRGLYYASYSSPRELVW 1498
            TPHVDLAFNSVEHVMRDVEGGWLLRYMHANGASMFFIVV+LHIFRGLYYASYSSPRE VW
Sbjct: 61   TPHVDLAFNSVEHVMRDVEGGWLLRYMHANGASMFFIVVYLHIFRGLYYASYSSPREFVW 120

Query: 1497 CLGVVIFLLMIVTAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNA 1318
            CLGVVIFLLMIVTAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNA
Sbjct: 121  CLGVVIFLLMIVTAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNA 180

Query: 1317 TLNRFFSLHYLLPLILVGASLLHLAALHQYGSNNPLGVHSEMDKIAFYPYFYVKDLVGWV 1138
            TLNRFFSLHYLLP ILVGASLLHLAALHQYGSNNPLGVHSEMDKI+FYPYFYVKDLVGWV
Sbjct: 181  TLNRFFSLHYLLPFILVGASLLHLAALHQYGSNNPLGVHSEMDKISFYPYFYVKDLVGWV 240

Query: 1137 ASAIFFSIWIFYAPNVLGHPDNYIPANPMSTPPHIVPEWYFLPIXXXXXXXXXXXXXXXX 958
            A AIFFSIWIFYAPNVLGHPDNYIPANPMSTPPHIVPEWYFLPI                
Sbjct: 241  AFAIFFSIWIFYAPNVLGHPDNYIPANPMSTPPHIVPEWYFLPI---------------- 284

Query: 957  XXXXXXXXXXXXXXXXXXXXXXXXXXICLLALPFFKSMYVRSSSFRPIHQGIFWXXXXXX 778
                                      ICLLALPFFKSMYVRSSSFRPI+QGIFW      
Sbjct: 285  -----YAILRSIPDKSGGVAAIALVFICLLALPFFKSMYVRSSSFRPIYQGIFWLLLADC 339

Query: 777  XXLGWIGCQPVEAPFVTIGQISPFVFFLFFAITPILGRVGRGIPNSYTDETDHT 616
              LGWIGCQPVEAPFVTIGQIS FVFFLFFAITPILGRVGRGIPNSYTDETDHT
Sbjct: 340  LLLGWIGCQPVEAPFVTIGQISSFVFFLFFAITPILGRVGRGIPNSYTDETDHT 393


>ref|YP_004927538.1| cob (mitochondrion) [Brassica carinata] gi|335354999|gb|AEH43553.1|
            cob [Brassica carinata]
          Length = 393

 Score =  721 bits (1861), Expect = 0.0
 Identities = 353/414 (85%), Positives = 360/414 (86%)
 Frame = -3

Query: 1857 ITIRNQRFSLLKQPISSTLNQHLIDYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHY 1678
            +TIRNQRFSLLKQPISSTLNQHL+DYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHY
Sbjct: 1    MTIRNQRFSLLKQPISSTLNQHLVDYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHY 60

Query: 1677 TPHVDLAFNSVEHVMRDVEGGWLLRYMHANGASMFFIVVHLHIFRGLYYASYSSPRELVW 1498
            TPHVDLAFNSVEH+MRDVEGGWLLRYMHANGASMFFIVV+LHIFRGLY+ASYSSPRE VW
Sbjct: 61   TPHVDLAFNSVEHIMRDVEGGWLLRYMHANGASMFFIVVYLHIFRGLYHASYSSPREFVW 120

Query: 1497 CLGVVIFLLMIVTAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNA 1318
            CLGVVIFLLMIVTAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNA
Sbjct: 121  CLGVVIFLLMIVTAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNA 180

Query: 1317 TLNRFFSLHYLLPLILVGASLLHLAALHQYGSNNPLGVHSEMDKIAFYPYFYVKDLVGWV 1138
            TLNRFFSLH+LLP ILVGASLLHLAALHQYGSNNPLGVHSEMDKIAFYPYFYVKDLVGWV
Sbjct: 181  TLNRFFSLHHLLPFILVGASLLHLAALHQYGSNNPLGVHSEMDKIAFYPYFYVKDLVGWV 240

Query: 1137 ASAIFFSIWIFYAPNVLGHPDNYIPANPMSTPPHIVPEWYFLPIXXXXXXXXXXXXXXXX 958
            A AIFFSIWIFYAPNVLGHPDNYIPANPMSTPPHIVPEWYFLPI                
Sbjct: 241  AFAIFFSIWIFYAPNVLGHPDNYIPANPMSTPPHIVPEWYFLPI---------------- 284

Query: 957  XXXXXXXXXXXXXXXXXXXXXXXXXXICLLALPFFKSMYVRSSSFRPIHQGIFWXXXXXX 778
                                      ICLLALPFFKSMYVRSSSFRPIHQG+FW      
Sbjct: 285  -----HAILRSIPDKAGGVAAIAPVFICLLALPFFKSMYVRSSSFRPIHQGMFWLLLADC 339

Query: 777  XXLGWIGCQPVEAPFVTIGQISPFVFFLFFAITPILGRVGRGIPNSYTDETDHT 616
              LGWIGCQPVEAPFVTIGQISP VFFLFFAITPILGRVGRGIPNSYTDETDHT
Sbjct: 340  LLLGWIGCQPVEAPFVTIGQISPLVFFLFFAITPILGRVGRGIPNSYTDETDHT 393


>ref|XP_002333252.1| predicted protein [Populus trichocarpa]
            gi|224110348|ref|XP_002333107.1| predicted protein
            [Populus trichocarpa] gi|224142794|ref|XP_002335964.1|
            predicted protein [Populus trichocarpa]
            gi|222834890|gb|EEE73339.1| predicted protein [Populus
            trichocarpa] gi|222835781|gb|EEE74216.1| predicted
            protein [Populus trichocarpa] gi|222836401|gb|EEE74808.1|
            predicted protein [Populus trichocarpa]
          Length = 393

 Score =  721 bits (1860), Expect = 0.0
 Identities = 354/414 (85%), Positives = 359/414 (86%)
 Frame = -3

Query: 1857 ITIRNQRFSLLKQPISSTLNQHLIDYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHY 1678
            +TI NQRFSLLKQPISSTLNQHLIDYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHY
Sbjct: 1    MTISNQRFSLLKQPISSTLNQHLIDYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHY 60

Query: 1677 TPHVDLAFNSVEHVMRDVEGGWLLRYMHANGASMFFIVVHLHIFRGLYYASYSSPRELVW 1498
            TPHVDLAFNSVEHVMRDVEGGWLLRYMHANGASMFFIVV+LHIFRGLYYASYSSPRE VW
Sbjct: 61   TPHVDLAFNSVEHVMRDVEGGWLLRYMHANGASMFFIVVYLHIFRGLYYASYSSPREFVW 120

Query: 1497 CLGVVIFLLMIVTAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNA 1318
            CLGVVIFLLMIVTAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNA
Sbjct: 121  CLGVVIFLLMIVTAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNA 180

Query: 1317 TLNRFFSLHYLLPLILVGASLLHLAALHQYGSNNPLGVHSEMDKIAFYPYFYVKDLVGWV 1138
            TLNRFFSLHYLLP ILVGASLLHLAALHQYGSNNPLGVHSEMDKI+FYPYFYVKDLVGWV
Sbjct: 181  TLNRFFSLHYLLPFILVGASLLHLAALHQYGSNNPLGVHSEMDKISFYPYFYVKDLVGWV 240

Query: 1137 ASAIFFSIWIFYAPNVLGHPDNYIPANPMSTPPHIVPEWYFLPIXXXXXXXXXXXXXXXX 958
            A AIFFSIWIFYAPNVLGHPDNYIPANPMSTPPHIVPEWYFLPI                
Sbjct: 241  AFAIFFSIWIFYAPNVLGHPDNYIPANPMSTPPHIVPEWYFLPI---------------- 284

Query: 957  XXXXXXXXXXXXXXXXXXXXXXXXXXICLLALPFFKSMYVRSSSFRPIHQGIFWXXXXXX 778
                                      ICLLALPF KSMYVRSSSFRPIHQGIFW      
Sbjct: 285  -----YAILRSIPDKSGGVAAIAPVFICLLALPFLKSMYVRSSSFRPIHQGIFWLLLADC 339

Query: 777  XXLGWIGCQPVEAPFVTIGQISPFVFFLFFAITPILGRVGRGIPNSYTDETDHT 616
              LGWIGCQPVEAPFVTIGQISPFVFFLFFAITPILGRVG+GIPNSYTDET+HT
Sbjct: 340  LLLGWIGCQPVEAPFVTIGQISPFVFFLFFAITPILGRVGKGIPNSYTDETEHT 393


>ref|YP_717171.1| apocytochrome b [Brassica napus] gi|37591119|dbj|BAC98921.1|
            apocytochrome b [Brassica napus]
          Length = 393

 Score =  719 bits (1857), Expect = 0.0
 Identities = 353/414 (85%), Positives = 359/414 (86%)
 Frame = -3

Query: 1857 ITIRNQRFSLLKQPISSTLNQHLIDYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHY 1678
            +TIRNQRFSLLKQPISSTLNQHL+DYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHY
Sbjct: 1    MTIRNQRFSLLKQPISSTLNQHLVDYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHY 60

Query: 1677 TPHVDLAFNSVEHVMRDVEGGWLLRYMHANGASMFFIVVHLHIFRGLYYASYSSPRELVW 1498
            TPHVDLAFNSVEH+MRDVEGGWLLRYMHANGASMFFIVV+LHIFRGLYYASYSSPRE VW
Sbjct: 61   TPHVDLAFNSVEHIMRDVEGGWLLRYMHANGASMFFIVVYLHIFRGLYYASYSSPREFVW 120

Query: 1497 CLGVVIFLLMIVTAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNA 1318
            CLGVVIFLLMIVTAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNA
Sbjct: 121  CLGVVIFLLMIVTAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNA 180

Query: 1317 TLNRFFSLHYLLPLILVGASLLHLAALHQYGSNNPLGVHSEMDKIAFYPYFYVKDLVGWV 1138
            TLNRFFSLHYLLP ILVGASLLHLAALHQYGSNNPLGVHSEMDKIAFYPYFYVKDLVGWV
Sbjct: 181  TLNRFFSLHYLLPFILVGASLLHLAALHQYGSNNPLGVHSEMDKIAFYPYFYVKDLVGWV 240

Query: 1137 ASAIFFSIWIFYAPNVLGHPDNYIPANPMSTPPHIVPEWYFLPIXXXXXXXXXXXXXXXX 958
            A AIFFSIWIFYAPNVLGHPDNYIPANPMSTPPHIVPEWYFLPI                
Sbjct: 241  AFAIFFSIWIFYAPNVLGHPDNYIPANPMSTPPHIVPEWYFLPI---------------- 284

Query: 957  XXXXXXXXXXXXXXXXXXXXXXXXXXICLLALPFFKSMYVRSSSFRPIHQGIFWXXXXXX 778
                                      ICLLALPFFKSMYVRSSSFRPI+QG+FW      
Sbjct: 285  -----YAILRSIPDKAGGVAAIALVFICLLALPFFKSMYVRSSSFRPIYQGMFWLLLADC 339

Query: 777  XXLGWIGCQPVEAPFVTIGQISPFVFFLFFAITPILGRVGRGIPNSYTDETDHT 616
              LGWIGCQPVEAPFVTIGQIS  VFFLFFAITPILGRVGRGIPNSYTDETDHT
Sbjct: 340  LLLGWIGCQPVEAPFVTIGQISSLVFFLFFAITPILGRVGRGIPNSYTDETDHT 393


>sp|P42792.2|CYB_ARATH RecName: Full=Cytochrome b; AltName: Full=Complex III subunit 3;
            AltName: Full=Complex III subunit III; AltName:
            Full=Cytochrome b-c1 complex subunit 3; AltName:
            Full=Ubiquinol-cytochrome-c reductase complex cytochrome
            b subunit
          Length = 393

 Score =  717 bits (1852), Expect = 0.0
 Identities = 352/414 (85%), Positives = 358/414 (86%)
 Frame = -3

Query: 1857 ITIRNQRFSLLKQPISSTLNQHLIDYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHY 1678
            +TIRNQRFSLLKQPISSTLNQHL+DYPTPSNLSYWWGFG LAGICLVIQIVTGVFLAMHY
Sbjct: 1    MTIRNQRFSLLKQPISSTLNQHLVDYPTPSNLSYWWGFGPLAGICLVIQIVTGVFLAMHY 60

Query: 1677 TPHVDLAFNSVEHVMRDVEGGWLLRYMHANGASMFFIVVHLHIFRGLYYASYSSPRELVW 1498
            TPHVDLAFNSVEH+MRDVEGGWLLRYMHANGASMFFIVV+LHIFRGLYYASYSSPRE VW
Sbjct: 61   TPHVDLAFNSVEHIMRDVEGGWLLRYMHANGASMFFIVVYLHIFRGLYYASYSSPREFVW 120

Query: 1497 CLGVVIFLLMIVTAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNA 1318
            CLGVVIFLLMIVTAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNA
Sbjct: 121  CLGVVIFLLMIVTAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNA 180

Query: 1317 TLNRFFSLHYLLPLILVGASLLHLAALHQYGSNNPLGVHSEMDKIAFYPYFYVKDLVGWV 1138
            TLNRFFSLHYLLP ILVGASLLHLAALHQYGSNNPLGVHSEMDKIAFYPYFYVKDLVGWV
Sbjct: 181  TLNRFFSLHYLLPFILVGASLLHLAALHQYGSNNPLGVHSEMDKIAFYPYFYVKDLVGWV 240

Query: 1137 ASAIFFSIWIFYAPNVLGHPDNYIPANPMSTPPHIVPEWYFLPIXXXXXXXXXXXXXXXX 958
            A AIFFSIWIFYAPNVLGHPDNYIPANPMSTPPHIVPEWYFLPI                
Sbjct: 241  AFAIFFSIWIFYAPNVLGHPDNYIPANPMSTPPHIVPEWYFLPI---------------- 284

Query: 957  XXXXXXXXXXXXXXXXXXXXXXXXXXICLLALPFFKSMYVRSSSFRPIHQGIFWXXXXXX 778
                                      ICLLALPFFKSMYVRSSSFRPI+QG+FW      
Sbjct: 285  -----YAILRSIPDKAGGVAAIALVFICLLALPFFKSMYVRSSSFRPIYQGMFWLLLADC 339

Query: 777  XXLGWIGCQPVEAPFVTIGQISPFVFFLFFAITPILGRVGRGIPNSYTDETDHT 616
              LGWIGCQPVEAPFVTIGQIS  VFFLFFAITPILGRVGRGIPNSYTDETDHT
Sbjct: 340  LLLGWIGCQPVEAPFVTIGQISSLVFFLFFAITPILGRVGRGIPNSYTDETDHT 393