BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00006234
         (1144 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002299908.1| predicted protein [Populus trichocarpa] gi|2...   320   3e-85
ref|XP_002513501.1| heterogeneous nuclear ribonucleoprotein, put...   318   2e-84
ref|XP_003532209.1| PREDICTED: heterogeneous nuclear ribonucleop...   313   5e-83
ref|XP_002313339.1| predicted protein [Populus trichocarpa] gi|2...   313   5e-83
ref|XP_002285426.1| PREDICTED: heterogeneous nuclear ribonucleop...   312   1e-82

>ref|XP_002299908.1| predicted protein [Populus trichocarpa] gi|222847166|gb|EEE84713.1|
           predicted protein [Populus trichocarpa]
          Length = 253

 Score =  320 bits (821), Expect = 3e-85
 Identities = 165/248 (66%), Positives = 192/248 (77%), Gaps = 1/248 (0%)
 Frame = -3

Query: 989 QRIIDQPPSFYGASPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVVRLRGLPFDCAEPD 810
           QR++DQ PSFYG SPG                             VVRLRGLPFDC E D
Sbjct: 16  QRMVDQGPSFYGNSPGSSFMYNTPPYGYVSQPPPPFP--------VVRLRGLPFDCTETD 67

Query: 809 IVEFFRGLDIVDILLVNKDGRFSGEAFCVLGYPLQVDFALQRNRQSMGRRYIEVFRTKRQ 630
           + EFFRGLDIVD+L V+K G+F+GEAFCVLGYPLQVDFALQ+NRQ+MGRRY+EVFR+KRQ
Sbjct: 68  VAEFFRGLDIVDVLFVHKGGKFTGEAFCVLGYPLQVDFALQKNRQNMGRRYVEVFRSKRQ 127

Query: 629 EYYSAIADEVSEGQLHSPPRRKARRAKSSDDNKDSAEHTGILRLRGLPYSAGKDDLIDFF 450
           +YY AIA+EVSE +    PRR   RAKS D+ KD AEHTG+LRLRGLP+SAGKDD+++FF
Sbjct: 128 DYYKAIANEVSESR--GSPRRNISRAKSYDEGKDLAEHTGVLRLRGLPFSAGKDDIMEFF 185

Query: 449 KDFELSEDGVHIVMNSDRRPSGEAYVEFASAEDSKAAMVKDRKTLGSRYIELFPSNQEDL 270
           KDF LSED +HI MNS+ RP+GEA+VEFA+AEDSKAAM KDR TLGSRYIELFPS+ E+L
Sbjct: 186 KDFVLSEDLIHITMNSEGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSIEEL 245

Query: 269 DEAV-RGR 249
           DEAV RGR
Sbjct: 246 DEAVSRGR 253


>ref|XP_002513501.1| heterogeneous nuclear ribonucleoprotein, putative [Ricinus
           communis] gi|223547409|gb|EEF48904.1| heterogeneous
           nuclear ribonucleoprotein, putative [Ricinus communis]
          Length = 260

 Score =  318 bits (814), Expect = 2e-84
 Identities = 164/248 (66%), Positives = 193/248 (77%), Gaps = 1/248 (0%)
 Frame = -3

Query: 989 QRIIDQPPSFYGASPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVVRLRGLPFDCAEPD 810
           QR++DQ PS+YG SPG                             VVRLRGLPFDC E D
Sbjct: 24  QRLVDQGPSYYGTSPGPSFMYNPPPYGYVAQPPPFP---------VVRLRGLPFDCTETD 74

Query: 809 IVEFFRGLDIVDILLVNKDGRFSGEAFCVLGYPLQVDFALQRNRQSMGRRYIEVFRTKRQ 630
           + EFF GLDIVD+L V+K G+F+GEAFCVLG PLQVDFALQ+NRQ+MGRRY+EVFR+KRQ
Sbjct: 75  VAEFFHGLDIVDVLFVHKGGKFTGEAFCVLGCPLQVDFALQKNRQNMGRRYVEVFRSKRQ 134

Query: 629 EYYSAIADEVSEGQLHSPPRRKARRAKSSDDNKDSAEHTGILRLRGLPYSAGKDDLIDFF 450
           +YY AIA+EVS+ +  SP  R+A RAKS D+ KDSAEHTG+LRLRGLP+SAGKDD+++FF
Sbjct: 135 DYYKAIANEVSDARGGSP--RRAPRAKSYDEGKDSAEHTGVLRLRGLPFSAGKDDIMEFF 192

Query: 449 KDFELSEDGVHIVMNSDRRPSGEAYVEFASAEDSKAAMVKDRKTLGSRYIELFPSNQEDL 270
           KDF LSED VHI MNS+ RP+GEA+VEFASAEDSKAAM KDR TLGSRYIELFPS+ E+L
Sbjct: 193 KDFVLSEDSVHITMNSEGRPTGEAFVEFASAEDSKAAMAKDRMTLGSRYIELFPSSIEEL 252

Query: 269 DEAV-RGR 249
           +EAV RGR
Sbjct: 253 EEAVTRGR 260


>ref|XP_003532209.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Glycine
           max]
          Length = 260

 Score =  313 bits (802), Expect = 5e-83
 Identities = 162/248 (65%), Positives = 188/248 (75%), Gaps = 1/248 (0%)
 Frame = -3

Query: 989 QRIIDQPPSFYGASPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVVRLRGLPFDCAEPD 810
           QR +D   SFYGAS G                             VVRLRGLPFDC E D
Sbjct: 21  QRTVDPGSSFYGASTGSNFMYNPSPYGYVSQPPPPPFP-------VVRLRGLPFDCTETD 73

Query: 809 IVEFFRGLDIVDILLVNKDGRFSGEAFCVLGYPLQVDFALQRNRQSMGRRYIEVFRTKRQ 630
           + EFF GLDIVD+L V+K G+F+GE FCVLGYPLQVDFALQRNRQ+MGRRY+EVFR+KRQ
Sbjct: 74  VAEFFHGLDIVDVLFVHKGGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQ 133

Query: 629 EYYSAIADEVSEGQLHSPPRRKARRAKSSDDNKDSAEHTGILRLRGLPYSAGKDDLIDFF 450
           EYY AIA+EVS+ +  SP RR A RAKS D+ KDSAEHTG+LRLRGLP+SA KDD+++FF
Sbjct: 134 EYYKAIANEVSDARGGSP-RRSASRAKSYDEGKDSAEHTGVLRLRGLPFSASKDDIMEFF 192

Query: 449 KDFELSEDGVHIVMNSDRRPSGEAYVEFASAEDSKAAMVKDRKTLGSRYIELFPSNQEDL 270
           KDF L ED +HI+MNS+ RPSGEAY EFASAEDSKAAMVKDR TLGSRYIELFPS+  ++
Sbjct: 193 KDFGLPEDSIHIIMNSEGRPSGEAYAEFASAEDSKAAMVKDRMTLGSRYIELFPSSPGEM 252

Query: 269 DEAV-RGR 249
           +EA+ RGR
Sbjct: 253 EEAISRGR 260


>ref|XP_002313339.1| predicted protein [Populus trichocarpa] gi|222849747|gb|EEE87294.1|
           predicted protein [Populus trichocarpa]
          Length = 253

 Score =  313 bits (802), Expect = 5e-83
 Identities = 162/248 (65%), Positives = 187/248 (75%), Gaps = 1/248 (0%)
 Frame = -3

Query: 989 QRIIDQPPSFYGASPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVVRLRGLPFDCAEPD 810
           QRI D+ PSFY  SPG                             VVRLRGLPFDC E D
Sbjct: 17  QRIADKGPSFYANSPGSSFMYNAPPNGYASQPPHFP---------VVRLRGLPFDCTETD 67

Query: 809 IVEFFRGLDIVDILLVNKDGRFSGEAFCVLGYPLQVDFALQRNRQSMGRRYIEVFRTKRQ 630
           + EFF GLDIVD+L V+K G+FSGEAFCVLGYPLQVDFALQ+NRQ+MGRRY+EVFR+KRQ
Sbjct: 68  VAEFFHGLDIVDVLFVHKGGKFSGEAFCVLGYPLQVDFALQKNRQNMGRRYVEVFRSKRQ 127

Query: 629 EYYSAIADEVSEGQLHSPPRRKARRAKSSDDNKDSAEHTGILRLRGLPYSAGKDDLIDFF 450
           +YY  IA+EVSE +    PRR   RAKS D+ KDSAEHTG+LRLRGLP+SA KDD+++FF
Sbjct: 128 DYYKTIANEVSESR--GSPRRNIPRAKSYDEGKDSAEHTGVLRLRGLPFSASKDDIMEFF 185

Query: 449 KDFELSEDGVHIVMNSDRRPSGEAYVEFASAEDSKAAMVKDRKTLGSRYIELFPSNQEDL 270
           KDF LSED +HI MNS+ RP+GEA+VEFA+AEDSKAAM KDR TLGSRYIELFPS+ E+ 
Sbjct: 186 KDFVLSEDSIHITMNSEGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSVEES 245

Query: 269 DEAV-RGR 249
           DEAV RGR
Sbjct: 246 DEAVSRGR 253


>ref|XP_002285426.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Vitis
           vinifera]
          Length = 258

 Score =  312 bits (799), Expect = 1e-82
 Identities = 161/248 (64%), Positives = 192/248 (77%), Gaps = 1/248 (0%)
 Frame = -3

Query: 989 QRIIDQPPSFYGASPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVVRLRGLPFDCAEPD 810
           QRI DQ  SFYG SPG                             VVRLRGLPFDC+E D
Sbjct: 21  QRITDQGSSFYGGSPGSNFMYNASPYSYIGQPPPFP---------VVRLRGLPFDCSEAD 71

Query: 809 IVEFFRGLDIVDILLVNKDGRFSGEAFCVLGYPLQVDFALQRNRQSMGRRYIEVFRTKRQ 630
           + EFF  LDIVD+L V+K+GRF+GEAFCVLGYPLQV+FALQRNRQ+MGRRY+EVFR+KRQ
Sbjct: 72  VAEFFHSLDIVDVLFVHKNGRFTGEAFCVLGYPLQVEFALQRNRQNMGRRYVEVFRSKRQ 131

Query: 629 EYYSAIADEVSEGQLHSPPRRKARRAKSSDDNKDSAEHTGILRLRGLPYSAGKDDLIDFF 450
           EYY AIA+EVS+ +  SP RR A +AKS+D+ K+SAEHTG+LRLRGLP+SA K+D++DFF
Sbjct: 132 EYYKAIANEVSDTRGGSP-RRTAPKAKSNDEGKESAEHTGVLRLRGLPFSASKEDIMDFF 190

Query: 449 KDFELSEDGVHIVMNSDRRPSGEAYVEFASAEDSKAAMVKDRKTLGSRYIELFPSNQEDL 270
           KDF LSED +H+ +NS+ RP+GEA+VEF +AEDSKAAM KDR TLGSRYIELFPS+ E+L
Sbjct: 191 KDFVLSEDSIHMTVNSEGRPTGEAFVEFTNAEDSKAAMAKDRMTLGSRYIELFPSSLEEL 250

Query: 269 DEAV-RGR 249
           DEAV RGR
Sbjct: 251 DEAVARGR 258