BLASTX nr result
ID: Coptis24_contig00005972
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00005972
(1142 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002314629.1| SIN3 component, histone deacetylase complex ... 390 e-106
ref|XP_002267856.2| PREDICTED: paired amphipathic helix protein ... 388 e-105
emb|CBI32068.3| unnamed protein product [Vitis vinifera] 388 e-105
ref|XP_002311786.1| SIN3 component, histone deacetylase complex ... 388 e-105
gb|ADL36860.1| WRKY domain class transcription factor [Malus x d... 388 e-105
>ref|XP_002314629.1| SIN3 component, histone deacetylase complex [Populus trichocarpa]
gi|222863669|gb|EEF00800.1| SIN3 component, histone
deacetylase complex [Populus trichocarpa]
Length = 1385
Score = 390 bits (1002), Expect = e-106
Identities = 196/276 (71%), Positives = 234/276 (84%), Gaps = 3/276 (1%)
Frame = +1
Query: 1 VLFRLHQTLYERLLCAKMNSSYAERKWRTSTDVSRSDLFGRFMSALHNILDGSADNTKFE 180
VLFRLHQTLYER+ AK+NSS AERKWR S D S +DL+ RFMSAL+N+LDGS+DNTKFE
Sbjct: 1113 VLFRLHQTLYERIQSAKVNSSSAERKWRASNDTSPTDLYARFMSALYNLLDGSSDNTKFE 1172
Query: 181 DECRAIIGTQSYMLFTLDKLIYKIVKQLQTVASDEMDHKLLQLYAYEKSRRLGRIVDLVY 360
D+CRAIIGTQSY+LFTLDKLIYK+VKQLQTVA+DEMD+KLLQLYAYEKSR+ GR+VD+VY
Sbjct: 1173 DDCRAIIGTQSYVLFTLDKLIYKLVKQLQTVAADEMDNKLLQLYAYEKSRKPGRLVDIVY 1232
Query: 361 HENARVLLHDENIYRFECASNPTRLSIQLMDYGHEKLEITAVSVEPTFAAYLHNDFLSVT 540
HENARVLLHDENIYR EC+S PT LSIQLMD+GH+K E+TAVS++P FA+YL NDFL V
Sbjct: 1233 HENARVLLHDENIYRIECSSAPTHLSIQLMDFGHDKPEVTAVSMDPNFASYLLNDFLPVV 1292
Query: 541 PNRKEMRGVFLKRNRRKFARGDEFSDTCKSMEGVQIVNGLECKISCTSSKVSYVLDTEDF 720
P++KE G+FLKRN+R+ A DE C++MEG ++ NGLECKI+C SSKVSYVLDTEDF
Sbjct: 1293 PDKKEKPGIFLKRNKRRNANSDE----CQAMEGFRVFNGLECKIACNSSKVSYVLDTEDF 1348
Query: 721 LFRMRKKRRGLLEAG---DQASINRYRVQRFHRLLT 819
LFR +K R L + G +Q I++ RVQRFHR L+
Sbjct: 1349 LFRTGRKSRTLQQNGSCHNQEKISK-RVQRFHRWLS 1383
>ref|XP_002267856.2| PREDICTED: paired amphipathic helix protein Sin3-like 4-like [Vitis
vinifera]
Length = 1421
Score = 388 bits (997), Expect = e-105
Identities = 186/249 (74%), Positives = 226/249 (90%)
Frame = +1
Query: 1 VLFRLHQTLYERLLCAKMNSSYAERKWRTSTDVSRSDLFGRFMSALHNILDGSADNTKFE 180
VLFRLHQTLYER+ AK+NSS ERKWR S+D + +DL+ RFM+AL+N+LDGS+DNTKFE
Sbjct: 1137 VLFRLHQTLYERMQSAKLNSSSGERKWRASSDTNSTDLYARFMNALYNLLDGSSDNTKFE 1196
Query: 181 DECRAIIGTQSYMLFTLDKLIYKIVKQLQTVASDEMDHKLLQLYAYEKSRRLGRIVDLVY 360
D+CRAIIGTQSY+LFTLDKLIYK+VKQLQTVA+DEMD+KLLQLYAYEKSR+ GR VD+VY
Sbjct: 1197 DDCRAIIGTQSYVLFTLDKLIYKLVKQLQTVATDEMDNKLLQLYAYEKSRKPGRFVDMVY 1256
Query: 361 HENARVLLHDENIYRFECASNPTRLSIQLMDYGHEKLEITAVSVEPTFAAYLHNDFLSVT 540
+EN+RVLLHDENIYR EC+S PT L+IQLMD GH+K E+TAVS++P FAAYL++DFLSV
Sbjct: 1257 YENSRVLLHDENIYRIECSSAPTHLTIQLMDNGHDKPEVTAVSMDPNFAAYLNSDFLSVV 1316
Query: 541 PNRKEMRGVFLKRNRRKFARGDEFSDTCKSMEGVQIVNGLECKISCTSSKVSYVLDTEDF 720
N K+ G+FL+RN+RK+ARGDEFS C++MEG+Q+VNGLECKI+C+SSKVSYVLDTEDF
Sbjct: 1317 -NEKKKSGIFLRRNKRKYARGDEFSVACQAMEGLQVVNGLECKIACSSSKVSYVLDTEDF 1375
Query: 721 LFRMRKKRR 747
LFR+RKKR+
Sbjct: 1376 LFRVRKKRK 1384
>emb|CBI32068.3| unnamed protein product [Vitis vinifera]
Length = 1445
Score = 388 bits (997), Expect = e-105
Identities = 186/249 (74%), Positives = 226/249 (90%)
Frame = +1
Query: 1 VLFRLHQTLYERLLCAKMNSSYAERKWRTSTDVSRSDLFGRFMSALHNILDGSADNTKFE 180
VLFRLHQTLYER+ AK+NSS ERKWR S+D + +DL+ RFM+AL+N+LDGS+DNTKFE
Sbjct: 1161 VLFRLHQTLYERMQSAKLNSSSGERKWRASSDTNSTDLYARFMNALYNLLDGSSDNTKFE 1220
Query: 181 DECRAIIGTQSYMLFTLDKLIYKIVKQLQTVASDEMDHKLLQLYAYEKSRRLGRIVDLVY 360
D+CRAIIGTQSY+LFTLDKLIYK+VKQLQTVA+DEMD+KLLQLYAYEKSR+ GR VD+VY
Sbjct: 1221 DDCRAIIGTQSYVLFTLDKLIYKLVKQLQTVATDEMDNKLLQLYAYEKSRKPGRFVDMVY 1280
Query: 361 HENARVLLHDENIYRFECASNPTRLSIQLMDYGHEKLEITAVSVEPTFAAYLHNDFLSVT 540
+EN+RVLLHDENIYR EC+S PT L+IQLMD GH+K E+TAVS++P FAAYL++DFLSV
Sbjct: 1281 YENSRVLLHDENIYRIECSSAPTHLTIQLMDNGHDKPEVTAVSMDPNFAAYLNSDFLSVV 1340
Query: 541 PNRKEMRGVFLKRNRRKFARGDEFSDTCKSMEGVQIVNGLECKISCTSSKVSYVLDTEDF 720
N K+ G+FL+RN+RK+ARGDEFS C++MEG+Q+VNGLECKI+C+SSKVSYVLDTEDF
Sbjct: 1341 -NEKKKSGIFLRRNKRKYARGDEFSVACQAMEGLQVVNGLECKIACSSSKVSYVLDTEDF 1399
Query: 721 LFRMRKKRR 747
LFR+RKKR+
Sbjct: 1400 LFRVRKKRK 1408
>ref|XP_002311786.1| SIN3 component, histone deacetylase complex [Populus trichocarpa]
gi|222851606|gb|EEE89153.1| SIN3 component, histone
deacetylase complex [Populus trichocarpa]
Length = 1343
Score = 388 bits (997), Expect = e-105
Identities = 199/296 (67%), Positives = 239/296 (80%), Gaps = 23/296 (7%)
Frame = +1
Query: 1 VLFRLHQTLYERLLCAKMNSSYAERKWRTSTDVSRSDLFGRFMSALHNILDGSADNTKFE 180
VLFRLHQTLYER+ AK+NSS AERKWR S D S +DL+ RFMSAL+N+LDGS+DNTKFE
Sbjct: 1050 VLFRLHQTLYERIQSAKVNSSSAERKWRASNDTSPTDLYARFMSALYNLLDGSSDNTKFE 1109
Query: 181 DECRAIIGTQSYMLFTLDKLIYKIVKQ-------------------LQTVASDEMDHKLL 303
D+CRAIIGTQSY+LFTLDKLIYK+VKQ LQTVA+DEMD+KLL
Sbjct: 1110 DDCRAIIGTQSYVLFTLDKLIYKLVKQSSAFLDLISSHQVLFYFPQLQTVATDEMDNKLL 1169
Query: 304 QLYAYEKSRRLGRIVDLVYHENARVLLHDENIYRFECASNPTRLSIQLMDYGHEKLEITA 483
QLYAYEKSR+ GR VD+V HENARVLLHDENIYR EC+S PTRLSIQLMD+GH+K E+TA
Sbjct: 1170 QLYAYEKSRKHGRFVDIVCHENARVLLHDENIYRIECSSAPTRLSIQLMDFGHDKPEVTA 1229
Query: 484 VSVEPTFAAYLHNDFLSVTPNRKEMRGVFLKRNRRKFARGDEFSDTCKSMEGVQIVNGLE 663
VS++P FA+YLHNDFLSV P++KE G+FLKRN+ +++ DE C++MEG +++NGLE
Sbjct: 1230 VSMDPNFASYLHNDFLSVVPDKKEKPGIFLKRNKHRYSDADE----CQAMEGFRVLNGLE 1285
Query: 664 CKISCTSSKVSYVLDTEDFLFRMRKKRRGLLEAG----DQASINRYRVQRFHRLLT 819
CKI+C SSKVSYVLDTEDFLFR +KK + L + G DQA I++ RVQRFHRLL+
Sbjct: 1286 CKIACNSSKVSYVLDTEDFLFRPQKKSKTLQQNGSCHDDQAKISK-RVQRFHRLLS 1340
>gb|ADL36860.1| WRKY domain class transcription factor [Malus x domestica]
Length = 1419
Score = 388 bits (996), Expect = e-105
Identities = 194/279 (69%), Positives = 236/279 (84%), Gaps = 6/279 (2%)
Frame = +1
Query: 1 VLFRLHQTLYERLLCAKMNSSYAERKWRT-STDVSRSDLFGRFMSALHNILDGSADNTKF 177
VLFRLHQTLYER+ AK+NSS AERKWR S D S SD + RFMSAL+N+LDGS+DNTKF
Sbjct: 1140 VLFRLHQTLYERIQSAKINSSSAERKWRAASNDSSPSDSYARFMSALYNLLDGSSDNTKF 1199
Query: 178 EDECRAIIGTQSYMLFTLDKLIYKIVKQLQTVASDEMDHKLLQLYAYEKSRRLGRIVDLV 357
ED+CRAIIGTQSY+LFTLDKLIYK+VKQLQTVASDE+D+KL QLYA+EKSR+LGR VD+V
Sbjct: 1200 EDDCRAIIGTQSYLLFTLDKLIYKLVKQLQTVASDEIDNKLFQLYAFEKSRKLGRFVDVV 1259
Query: 358 YHENARVLLHDENIYRFECASNPTRLSIQLMDYGHEKLEITAVSVEPTFAAYLHNDFLSV 537
YHENARVLL+DENIYR ECAS+PTR+SIQLMD+GH+K E+TAVS++P F+AYLHN+FLSV
Sbjct: 1260 YHENARVLLYDENIYRIECASSPTRVSIQLMDFGHDKPEMTAVSMDPNFSAYLHNEFLSV 1319
Query: 538 TPNRKEMRGVFLKRNRRKFARGDEFSDTCKSMEGVQIVNGLECKISCTSSKVSYVLDTED 717
P++KE G+FLKRN+ K+ DE S C++MEG+++ NGLECKI+C SSKVSYVLDTED
Sbjct: 1320 LPDKKEKSGIFLKRNKHKY-NSDELSAICEAMEGLKVANGLECKIACHSSKVSYVLDTED 1378
Query: 718 FLFRMRKKRRGLLEAGD-----QASINRYRVQRFHRLLT 819
FLFR +KKR+ L + G ++ RV+RF RLL+
Sbjct: 1379 FLFRTKKKRKSLHQNGSCHNPARSPNGSGRVERFQRLLS 1417