BLASTX nr result

ID: Coptis24_contig00005938 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00005938
         (360 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002332640.1| predicted protein [Populus trichocarpa] gi|2...    60   1e-07
ref|XP_002512378.1| Kinesin-3, putative [Ricinus communis] gi|22...    57   1e-06

>ref|XP_002332640.1| predicted protein [Populus trichocarpa] gi|222832867|gb|EEE71344.1|
           predicted protein [Populus trichocarpa]
          Length = 338

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 27/45 (60%), Positives = 33/45 (73%)
 Frame = -2

Query: 320 SKYLESPSMQVGSWKPKHPTMVALHRRHFVWSPLKQINQKNNRKS 186
           SK++ SP  Q GSWKPKHPT+VAL R+  VWSPLK  + +N R S
Sbjct: 156 SKFMGSPPPQAGSWKPKHPTVVALQRKSLVWSPLKLRSFQNRRPS 200


>ref|XP_002512378.1| Kinesin-3, putative [Ricinus communis] gi|223548339|gb|EEF49830.1|
           Kinesin-3, putative [Ricinus communis]
          Length = 786

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 27/46 (58%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
 Frame = -2

Query: 320 SKYLESP-SMQVGSWKPKHPTMVALHRRHFVWSPLKQINQKNNRKS 186
           SK++ SP + Q G WKP+HPT+VAL R+  VWSPLK    KN RKS
Sbjct: 729 SKFMGSPPAAQAGPWKPRHPTVVALQRKSLVWSPLKLRGPKNYRKS 774


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