BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00005869
         (1286 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN60955.1| hypothetical protein VITISV_008877 [Vitis vinifera]    92   3e-16
ref|NP_195598.1| putative F-box protein [Arabidopsis thaliana] g...    92   3e-16
emb|CAN60954.1| hypothetical protein VITISV_008876 [Vitis vinifera]    90   1e-15
gb|AAD32931.1|AC004135_6 T17H7.6 [Arabidopsis thaliana]                86   2e-14
ref|NP_174365.1| F-box domain-containing protein [Arabidopsis th...    86   2e-14

>emb|CAN60955.1| hypothetical protein VITISV_008877 [Vitis vinifera]
          Length = 289

 Score = 92.0 bits (227), Expect = 3e-16
 Identities = 79/246 (32%), Positives = 118/246 (47%), Gaps = 31/246 (12%)
 Frame = -3

Query: 1239 STPRIPSNLLSHIFSKVPVKSLCRFKCVSKSWFSIIHDNNF---HRS-VKKPIVVRLTQT 1072
            +T  I   L+  I + +PVKSL +F+ V KSW S+I D +F   H+S     +++    T
Sbjct: 17   NTVSIADELVFEILTYIPVKSLLQFRSVCKSWRSMISDPSFVEAHQSRSATTLLISFPDT 76

Query: 1071 VGKETSLHLYSIVGTGAASLICKSTHGVLCIDSKSCNGLICFRNPMVNN-------LEVC 913
                   HL+SI   G A  +   +H     +S+S NGLIC    +V +       + VC
Sbjct: 77   RRPSGRRHLFSI-SDGEARQLSGFSH---WNNSQSVNGLICIYEQLVPSSPKLSFRVIVC 132

Query: 912  NLTTQEVVSL-----TERDGXXXXXXXXXXFDPLTKKYKVL-AWGGRNFN--YMVYTLGT 757
            N +T E V+L     ++ D           FDP TK YK+L AW GR     + ++TLG+
Sbjct: 133  NPSTGERVTLPPTHFSKADFSFCHQNISLGFDPSTKTYKILRAWWGRYGGPIHEIFTLGS 192

Query: 756  ESWRQIKSRPAGKFSQHSTRSFCMDGTFYWYST------------DKESVISFNLADEKF 613
             +WR IK  P        T+  C++GT YW +T             K  VI+F++ +EKF
Sbjct: 193  HAWRIIKDDPEYAL---ETKGICLNGTIYWAATFDLSKDNSSFVVMKNRVIAFDVGEEKF 249

Query: 612  GVIQGP 595
              +  P
Sbjct: 250  RSVPVP 255


>ref|NP_195598.1| putative F-box protein [Arabidopsis thaliana]
            gi|75266820|sp|Q9T0J4.1|FB249_ARATH RecName:
            Full=Putative F-box protein At4g38870
            gi|4490339|emb|CAB38621.1| putative protein [Arabidopsis
            thaliana] gi|7270870|emb|CAB80550.1| putative protein
            [Arabidopsis thaliana] gi|332661585|gb|AEE86985.1|
            putative F-box protein [Arabidopsis thaliana]
          Length = 426

 Score = 92.0 bits (227), Expect = 3e-16
 Identities = 107/381 (28%), Positives = 161/381 (42%), Gaps = 42/381 (11%)
 Frame = -3

Query: 1227 IPSNLLSHIFSKVPVKSLCRFKCVSKSWFSIIHDNNF-----HRSVKKP---IVVRLTQT 1072
            +P +L+  I  K+ +K L RF CVSK W SII D  F     + S+K+P   + V   Q+
Sbjct: 53   LPVDLIMEILKKLSLKPLIRFLCVSKLWASIIRDPYFMKLFLNESLKRPKSLVFVFRAQS 112

Query: 1071 VGK-ETSLHLYS---IVGTGAASLICKSTHGVLCID------SKSCNGLICFRNPMVNNL 922
            +G   +S+HL S   I  + ++S     T+ V C        S S +GLIC+  P  ++L
Sbjct: 113  LGSIFSSVHLKSTREISSSSSSSSASSITYHVTCYTQQRMTISPSVHGLICYGPP--SSL 170

Query: 921  EVCNLTTQEVVSLTERDGXXXXXXXXXXFDPLTKKYKVLA----------WGGRNFNYMV 772
             + N  T+  ++L +             +DPL   YKV+             G      V
Sbjct: 171  VIYNPCTRRSITLPKIKAGRRAINQYIGYDPLDGNYKVVCITRGMPMLRNRRGLAEEIQV 230

Query: 771  YTLGT--ESWRQIKSRPAGKFSQHS--TRSFCMDGTFYWYS-----TDKESVISFNLADE 619
             TLGT   SWR I          HS  +   C++G  Y+ +      ++ +++SF++  E
Sbjct: 231  LTLGTRDSSWRMIHD----IIPPHSPVSEELCINGVLYYRAFIGTKLNESAIMSFDVRSE 286

Query: 618  KFGVIQGPRRIERGLDRMVMKLFELEGCLCLVDYHYLGRDQSRKRILDLWMSKDFKCGEW 439
            KF +I+ P        R   KL + EG L ++ Y     ++    I+ LW+ +D   GEW
Sbjct: 287  KFDLIKVPCNF-----RSFSKLAKYEGKLAVIFY-----EKKTSGIIGLWILEDASNGEW 336

Query: 438  VLMTSIALPQEAMSLEIPCCTRPGEIVLAKSSDRSRVLYLYSILTRKLNKMKVDGVPLTF 259
               T  ALP                  LA SS  SR+L L    T   +  ++   P   
Sbjct: 337  SKKT-FALPN-----------------LAASSTNSRILKLQKFRTTDADTCEIIFTPSYA 378

Query: 258  GDPLSC-----LVTNHVENFV 211
               LS      L  N V  FV
Sbjct: 379  HSSLSSAIYCDLKENKVRKFV 399


>emb|CAN60954.1| hypothetical protein VITISV_008876 [Vitis vinifera]
          Length = 862

 Score = 90.1 bits (222), Expect = 1e-15
 Identities = 103/390 (26%), Positives = 168/390 (43%), Gaps = 46/390 (11%)
 Frame = -3

Query: 1227 IPSNLLSHIFSKVPVKSLCRFKCVSKSWFSIIHDNNF---HRS-VKKPIVVRLTQTVGKE 1060
            IP  L+  I + +PVKSL + + V K W S+I D +F   HRS     +++    T    
Sbjct: 481  IPDELVFEILTYIPVKSLLQCRGVCKRWRSMISDPSFIEAHRSRSATTLLISFPDTHRPR 540

Query: 1059 TSLHLYSIVGTGAASLICKSTHGVLCIDSKSCNGLICFRN------PMVN-NLEVCNLTT 901
               HL+SI   G A  +  S H      S+S NGLIC         P ++  + +CN +T
Sbjct: 541  RKHHLFSI-RDGEARQLSGSRH---WNTSQSVNGLICLYEQHDRSFPKLSFRVTLCNPST 596

Query: 900  QEVVSL-----TERDGXXXXXXXXXXFDPLTKKYKVLAWGGRNFNYM---VYTLGTESWR 745
            +E V+L     +  D           FDP TK YK+L      FN +   + TLG  +WR
Sbjct: 597  RERVTLPPTRFSNPDLCFDHQHISLGFDPSTKTYKILKVWFERFNSIMCEILTLGXRAWR 656

Query: 744  QIKSRPAGKFSQHSTRSFCMDGTFYW------------YSTDKESVISFNLADEKFGVIQ 601
             IK    G       +  C++GT YW            +   +  VI+F++ +EKF  + 
Sbjct: 657  IIKD---GLEYTLEAKGICLNGTIYWADARHISEDYPHFVVMQNRVIAFDVGEEKFRSVP 713

Query: 600  GPRRIERGLDRMVMKLFELEGCLCLVDYHYLGRDQSRKRILDLWMSKDFKCGEWVLMTSI 421
             P  +    D+ +  + ++ G + + DY ++    S   ++ +W  +D   G W     I
Sbjct: 714  VPPEVPI-WDKCMSSIIQIGGHMAIADYQHVATGIS--TVMLIWKLEDSVNGIW-SQKRI 769

Query: 420  ALPQEAMSLEIP---------CCTRPGEIVLAKSSDRSRVLYLY-SILTRKLNKMKVDGV 271
             LP+  +   +P           +  G I+L  S        L+ ++   +L +  +   
Sbjct: 770  LLPESWIHRSVPNPRLCHFCVASSDGGNIILIPSGFFRDFYVLHCNVEEGRLWREAIRRP 829

Query: 270  PLTFGDPLSCLVTN-----HVENFVSLKNL 196
            P    D  S +VT+     +VE+ VSLK +
Sbjct: 830  PQDDWDSRSSIVTSRQVCEYVESLVSLKEI 859


>gb|AAD32931.1|AC004135_6 T17H7.6 [Arabidopsis thaliana]
          Length = 502

 Score = 86.3 bits (212), Expect = 2e-14
 Identities = 91/370 (24%), Positives = 159/370 (42%), Gaps = 51/370 (13%)
 Frame = -3

Query: 1227 IPSNLLSHIFSKVPVKSLCRFKCVSKSWFSIIHDNNFHRSV------------------- 1105
            IP +L   I +++P KSL +FKCVSK W SIIH+ +F  S                    
Sbjct: 9    IPFDLTVEILTRLPAKSLMKFKCVSKLWSSIIHNQSFIDSFYSISSTRPRFIVAFSNGSF 68

Query: 1104 ----KKPIVVRLTQTVGKETSLHLYSIVGTGAASLICKSTHGVLCIDSKSCNGLICFRNP 937
                +K + +  +   G E+S  + + + T   SL   +     CI   S NG I     
Sbjct: 69   PSDKEKRLFIFSSSHEGHESSSSVITNLDTTIPSLTVSNNLASRCI---SVNGFIAC--S 123

Query: 936  MVNNLEVCNLTTQEVVSL--TERDGXXXXXXXXXXFDPLTKKYKVLAW-------GGRNF 784
            +     +CN +T++V+ L                 +DP+  ++K LA             
Sbjct: 124  LYTRFTICNPSTRQVIVLPILPSGRAPDMRSTCIGYDPVDDQFKALALISSCIPNKDSTV 183

Query: 783  NYMVYTLGTE----SWRQIKSRPAGKFSQHSTRSFCMDGTFYWYS-TDKES----VISFN 631
             ++V TL  +    SWRQI+           T   C++G  Y+ + T ++S    ++ F+
Sbjct: 184  EHLVLTLKGDKKNYSWRQIQGNNNIPPYSPVTMRVCINGVVYYGAWTPRQSMNAVIVCFD 243

Query: 630  LADEKFGVIQGPRRIERGLDRMVMKLFELEGCLCLVDYHYLGRDQSRKRILDLWMSKDFK 451
            +  EK   I+ P+ + R  +  +  L E +G L  +    +    SR    DLW+ +D +
Sbjct: 244  VRSEKITFIKTPKDVVRWCNDSI--LMEYKGKLASI----VRNRYSRFDTFDLWVLEDIE 297

Query: 450  CGEWVLMT-----SIALPQEAMSLEIPCCTRPGEIVLAKS-----SDRSRVLYLYSILTR 301
              EW   T     S+    E  ++  P   + GEI+LA +       RS  ++ Y + T+
Sbjct: 298  KQEWSKQTCEIPLSVWDSVENFNMSFPGINKFGEIILAPTCLSGYHLRSFYIFYYHVETK 357

Query: 300  KLNKMKVDGV 271
            K+ +++++G+
Sbjct: 358  KIRRVRLEGI 367


>ref|NP_174365.1| F-box domain-containing protein [Arabidopsis thaliana]
            gi|142989205|sp|Q9SY20.2|FB20_ARATH RecName: Full=F-box
            protein At1g30790 gi|332193151|gb|AEE31272.1| F-box
            domain-containing protein [Arabidopsis thaliana]
          Length = 399

 Score = 86.3 bits (212), Expect = 2e-14
 Identities = 91/370 (24%), Positives = 159/370 (42%), Gaps = 51/370 (13%)
 Frame = -3

Query: 1227 IPSNLLSHIFSKVPVKSLCRFKCVSKSWFSIIHDNNFHRSV------------------- 1105
            IP +L   I +++P KSL +FKCVSK W SIIH+ +F  S                    
Sbjct: 9    IPFDLTVEILTRLPAKSLMKFKCVSKLWSSIIHNQSFIDSFYSISSTRPRFIVAFSNGSF 68

Query: 1104 ----KKPIVVRLTQTVGKETSLHLYSIVGTGAASLICKSTHGVLCIDSKSCNGLICFRNP 937
                +K + +  +   G E+S  + + + T   SL   +     CI   S NG I     
Sbjct: 69   PSDKEKRLFIFSSSHEGHESSSSVITNLDTTIPSLTVSNNLASRCI---SVNGFIAC--S 123

Query: 936  MVNNLEVCNLTTQEVVSL--TERDGXXXXXXXXXXFDPLTKKYKVLAW-------GGRNF 784
            +     +CN +T++V+ L                 +DP+  ++K LA             
Sbjct: 124  LYTRFTICNPSTRQVIVLPILPSGRAPDMRSTCIGYDPVDDQFKALALISSCIPNKDSTV 183

Query: 783  NYMVYTLGTE----SWRQIKSRPAGKFSQHSTRSFCMDGTFYWYS-TDKES----VISFN 631
             ++V TL  +    SWRQI+           T   C++G  Y+ + T ++S    ++ F+
Sbjct: 184  EHLVLTLKGDKKNYSWRQIQGNNNIPPYSPVTMRVCINGVVYYGAWTPRQSMNAVIVCFD 243

Query: 630  LADEKFGVIQGPRRIERGLDRMVMKLFELEGCLCLVDYHYLGRDQSRKRILDLWMSKDFK 451
            +  EK   I+ P+ + R  +  +  L E +G L  +    +    SR    DLW+ +D +
Sbjct: 244  VRSEKITFIKTPKDVVRWCNDSI--LMEYKGKLASI----VRNRYSRFDTFDLWVLEDIE 297

Query: 450  CGEWVLMT-----SIALPQEAMSLEIPCCTRPGEIVLAKS-----SDRSRVLYLYSILTR 301
              EW   T     S+    E  ++  P   + GEI+LA +       RS  ++ Y + T+
Sbjct: 298  KQEWSKQTCEIPLSVWDSVENFNMSFPGINKFGEIILAPTCLSGYHLRSFYIFYYHVETK 357

Query: 300  KLNKMKVDGV 271
            K+ +++++G+
Sbjct: 358  KIRRVRLEGI 367