BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00005784
         (1582 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28722.3| unnamed protein product [Vitis vinifera]              264   4e-68
ref|XP_003632339.1| PREDICTED: pentatricopeptide repeat-containi...   264   4e-68
ref|XP_002306785.1| predicted protein [Populus trichocarpa] gi|2...   253   1e-64
ref|XP_002524751.1| pentatricopeptide repeat-containing protein,...   247   5e-63
ref|XP_004146992.1| PREDICTED: pentatricopeptide repeat-containi...   245   2e-62

>emb|CBI28722.3| unnamed protein product [Vitis vinifera]
          Length = 1361

 Score =  264 bits (675), Expect = 4e-68
 Identities = 128/155 (82%), Positives = 139/155 (89%), Gaps = 4/155 (2%)
 Frame = -2

Query: 1581 QRADCGVHEWNNVIHFFCKKRLMQDAEKALKKMRALGQTPNAQTF----TGYAAIGGKYI 1414
            QR DCGVH+WNNVIHFFC+KRLMQDAEKALKKMR+LG  PNAQTF    TGYAAIGGKY+
Sbjct: 1201 QRVDCGVHDWNNVIHFFCRKRLMQDAEKALKKMRSLGHAPNAQTFHSMVTGYAAIGGKYV 1260

Query: 1413 EVTELWGEMKDLASSSSMKFDQELLDSVLYTFVRGGFFLRANEVVEKMEAGDMFIDKYKY 1234
            EVTELWGEMK  ASSSSMKFDQELLD+VLYTFVRGGFF+RANEVVE ME G MFIDKYKY
Sbjct: 1261 EVTELWGEMKSFASSSSMKFDQELLDAVLYTFVRGGFFVRANEVVEMMERGKMFIDKYKY 1320

Query: 1233 RTIFLKYHKTLDKKKNPKVQTEARFKRREAALAFR 1129
            RT+FLKYHKTL K K PKVQTEA+F+RR+AAL F+
Sbjct: 1321 RTLFLKYHKTLYKSKPPKVQTEAQFRRRDAALTFK 1355


>ref|XP_003632339.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03100,
            mitochondrial-like [Vitis vinifera]
          Length = 784

 Score =  264 bits (675), Expect = 4e-68
 Identities = 128/155 (82%), Positives = 139/155 (89%), Gaps = 4/155 (2%)
 Frame = -2

Query: 1581 QRADCGVHEWNNVIHFFCKKRLMQDAEKALKKMRALGQTPNAQTF----TGYAAIGGKYI 1414
            QR DCGVH+WNNVIHFFC+KRLMQDAEKALKKMR+LG  PNAQTF    TGYAAIGGKY+
Sbjct: 624  QRVDCGVHDWNNVIHFFCRKRLMQDAEKALKKMRSLGHAPNAQTFHSMVTGYAAIGGKYV 683

Query: 1413 EVTELWGEMKDLASSSSMKFDQELLDSVLYTFVRGGFFLRANEVVEKMEAGDMFIDKYKY 1234
            EVTELWGEMK  ASSSSMKFDQELLD+VLYTFVRGGFF+RANEVVE ME G MFIDKYKY
Sbjct: 684  EVTELWGEMKSFASSSSMKFDQELLDAVLYTFVRGGFFVRANEVVEMMERGKMFIDKYKY 743

Query: 1233 RTIFLKYHKTLDKKKNPKVQTEARFKRREAALAFR 1129
            RT+FLKYHKTL K K PKVQTEA+F+RR+AAL F+
Sbjct: 744  RTLFLKYHKTLYKSKPPKVQTEAQFRRRDAALTFK 778


>ref|XP_002306785.1| predicted protein [Populus trichocarpa] gi|222856234|gb|EEE93781.1|
            predicted protein [Populus trichocarpa]
          Length = 750

 Score =  253 bits (646), Expect = 1e-64
 Identities = 124/155 (80%), Positives = 136/155 (87%), Gaps = 4/155 (2%)
 Frame = -2

Query: 1581 QRADCGVHEWNNVIHFFCKKRLMQDAEKALKKMRALGQTPNAQTF----TGYAAIGGKYI 1414
            Q AD GVH+WNNVIHFFCKKRLMQDAEKALKKMR+LG  PNAQTF    TGYAAIGGKYI
Sbjct: 590  QAADSGVHDWNNVIHFFCKKRLMQDAEKALKKMRSLGHAPNAQTFHSMVTGYAAIGGKYI 649

Query: 1413 EVTELWGEMKDLASSSSMKFDQELLDSVLYTFVRGGFFLRANEVVEKMEAGDMFIDKYKY 1234
            EVTELWGEMK +AS++SMKFDQELLDSVLYTFVRGGFF RANEVV+ ME G MFIDKYKY
Sbjct: 650  EVTELWGEMKSIASATSMKFDQELLDSVLYTFVRGGFFSRANEVVDMMEKGKMFIDKYKY 709

Query: 1233 RTIFLKYHKTLDKKKNPKVQTEARFKRREAALAFR 1129
            RT++LKYHKTL K K PK+QTE+  K+REAAL F+
Sbjct: 710  RTLYLKYHKTLYKGKTPKIQTESLVKKREAALTFK 744


>ref|XP_002524751.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223535935|gb|EEF37594.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 787

 Score =  247 bits (631), Expect = 5e-63
 Identities = 121/155 (78%), Positives = 136/155 (87%), Gaps = 4/155 (2%)
 Frame = -2

Query: 1581 QRADCGVHEWNNVIHFFCKKRLMQDAEKALKKMRALGQTPNAQTF----TGYAAIGGKYI 1414
            Q  D GVH+WN VIHFFCKKRLMQDAEKALKKMR+LG  PNAQTF    TGYAAIGGKY+
Sbjct: 627  QTVDSGVHDWNYVIHFFCKKRLMQDAEKALKKMRSLGHAPNAQTFHSMVTGYAAIGGKYV 686

Query: 1413 EVTELWGEMKDLASSSSMKFDQELLDSVLYTFVRGGFFLRANEVVEKMEAGDMFIDKYKY 1234
            EVTELWGEMK +AS++SMKFDQELLDSVLYTFVRGGFF RANEVV  ME  +MFIDKYKY
Sbjct: 687  EVTELWGEMKSIASATSMKFDQELLDSVLYTFVRGGFFSRANEVVAMMEKVEMFIDKYKY 746

Query: 1233 RTIFLKYHKTLDKKKNPKVQTEARFKRREAALAFR 1129
            RT+FLKYHKTL K K+PK+QTEA+ ++REAAL+F+
Sbjct: 747  RTLFLKYHKTLYKGKSPKIQTEAQARKREAALSFK 781


>ref|XP_004146992.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03100,
            mitochondrial-like [Cucumis sativus]
            gi|449503826|ref|XP_004162196.1| PREDICTED:
            pentatricopeptide repeat-containing protein At1g03100,
            mitochondrial-like [Cucumis sativus]
          Length = 796

 Score =  245 bits (626), Expect = 2e-62
 Identities = 120/155 (77%), Positives = 133/155 (85%), Gaps = 4/155 (2%)
 Frame = -2

Query: 1581 QRADCGVHEWNNVIHFFCKKRLMQDAEKALKKMRALGQTPNAQTF----TGYAAIGGKYI 1414
            QR D G+H+WNNVIHFFCKKRLMQDAEKALKKMR+LG  PNAQTF    TGYAAIGGKY+
Sbjct: 636  QRVDYGLHDWNNVIHFFCKKRLMQDAEKALKKMRSLGHCPNAQTFHSMVTGYAAIGGKYV 695

Query: 1413 EVTELWGEMKDLASSSSMKFDQELLDSVLYTFVRGGFFLRANEVVEKMEAGDMFIDKYKY 1234
            EVTELWGEMK +AS+S +KFDQELLDSVLYTFVRGGFF RANEVVE ME   MFIDKYKY
Sbjct: 696  EVTELWGEMKSIASASFLKFDQELLDSVLYTFVRGGFFARANEVVEVMEKDKMFIDKYKY 755

Query: 1233 RTIFLKYHKTLDKKKNPKVQTEARFKRREAALAFR 1129
            RT+FLKYH+TL K K PK QTEA+ ++RE  LAF+
Sbjct: 756  RTLFLKYHRTLYKGKAPKFQTEAQLRKRETTLAFK 790