BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00005777
         (697 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002511787.1| DNA binding protein, putative [Ricinus commu...   194   4e-67
ref|XP_002273159.1| PREDICTED: flap endonuclease GEN-like 1 [Vit...   197   9e-67
ref|XP_003623847.1| Flap endonuclease GEN-like protein [Medicago...   189   1e-66
gb|ABN08837.1| Helix-hairpin-helix motif, class 2 [Medicago trun...   176   1e-62
ref|XP_002889348.1| hypothetical protein ARALYDRAFT_311256 [Arab...   186   2e-62

>ref|XP_002511787.1| DNA binding protein, putative [Ricinus communis]
           gi|223548967|gb|EEF50456.1| DNA binding protein,
           putative [Ricinus communis]
          Length = 609

 Score =  194 bits (493), Expect(2) = 4e-67
 Identities = 96/136 (70%), Positives = 112/136 (82%), Gaps = 3/136 (2%)
 Frame = +1

Query: 1   TINLFSKLGAFPVFVTDGTPSPLKARARMERFYRLTGLDVRKV---EDGVSVERNRAFQK 171
           TINLFSK GAFPVFV DGTPSPLK+RAR+ RF+R +G+D   +   E+GVSVERN AF K
Sbjct: 59  TINLFSKFGAFPVFVVDGTPSPLKSRARISRFFRSSGIDSSVLPTPEEGVSVERNGAFLK 118

Query: 172 CVRECVXXXXXXGIPVLKARCEAEELCAQLNSEGHVDACITADSDAFLYGAKCVIKCLRP 351
           CV+ECV      G+PVLKA  EAE LCAQLNS+G VDACITADSDAFL+GAKCVIK ++P
Sbjct: 119 CVKECVELLELFGMPVLKANGEAEALCAQLNSQGLVDACITADSDAFLFGAKCVIKSIKP 178

Query: 352 SSKEPFECYYMSDLEA 399
           +SKEPFECY MSD+E+
Sbjct: 179 NSKEPFECYQMSDIES 194



 Score = 87.0 bits (214), Expect(2) = 4e-67
 Identities = 46/78 (58%), Positives = 59/78 (75%)
 Frame = +3

Query: 459 LGLKQVHLVAISLLVGNDHDLGGVSGIGIETALRFVRMFPEEEILNRLHDIGNGDIPLFQ 638
           L LK+ HL+AI+LLVGNDHDL GV GIG++TALRFV+ F E+EILN L +IG G+  +F 
Sbjct: 196 LALKRKHLIAIALLVGNDHDLNGVQGIGVDTALRFVQTFHEDEILNCLREIGKGNTNIFL 255

Query: 639 IDSRSVGDCDLPNPNENS 692
             SR V D  + +P+ENS
Sbjct: 256 GVSRVVEDL-MIDPHENS 272


>ref|XP_002273159.1| PREDICTED: flap endonuclease GEN-like 1 [Vitis vinifera]
           gi|296089141|emb|CBI38844.3| unnamed protein product
           [Vitis vinifera]
          Length = 667

 Score =  197 bits (502), Expect(2) = 9e-67
 Identities = 98/136 (72%), Positives = 113/136 (83%), Gaps = 3/136 (2%)
 Frame = +1

Query: 1   TINLFSKLGAFPVFVTDGTPSPLKARARMERFYRLTGLDVRK---VEDGVSVERNRAFQK 171
           TINLFSK GAFPVFV DGTPSPLK++AR+ RF+R +G+D+     VE+GVSVERN  F +
Sbjct: 59  TINLFSKFGAFPVFVVDGTPSPLKSQARIARFFRGSGIDLSGLPVVEEGVSVERNAEFSR 118

Query: 172 CVRECVXXXXXXGIPVLKARCEAEELCAQLNSEGHVDACITADSDAFLYGAKCVIKCLRP 351
            V+ECV      GIPVLKAR EAE LCAQLNSEGHVDACITADSDAFL+GAKCVIKCLRP
Sbjct: 119 RVQECVELLELLGIPVLKAREEAEALCAQLNSEGHVDACITADSDAFLFGAKCVIKCLRP 178

Query: 352 SSKEPFECYYMSDLEA 399
           + KEP ECY+MSD+E+
Sbjct: 179 NCKEPLECYHMSDIES 194



 Score = 82.4 bits (202), Expect(2) = 9e-67
 Identities = 45/79 (56%), Positives = 59/79 (74%)
 Frame = +3

Query: 459 LGLKQVHLVAISLLVGNDHDLGGVSGIGIETALRFVRMFPEEEILNRLHDIGNGDIPLFQ 638
           LGLK+ HL+AISLLVGND+DL GV GIG++TA+RFV+ F E+EILNRL + GNG   +F 
Sbjct: 196 LGLKRKHLIAISLLVGNDYDLNGVQGIGLDTAVRFVQGFSEDEILNRLQEKGNG-ATVFD 254

Query: 639 IDSRSVGDCDLPNPNENSP 695
              +S+ D  +P  +E SP
Sbjct: 255 GAVKSMDD-SIPCLDEKSP 272


>ref|XP_003623847.1| Flap endonuclease GEN-like protein [Medicago truncatula]
           gi|124360235|gb|ABN08248.1| Helix-hairpin-helix motif,
           class 2 [Medicago truncatula]
           gi|355498862|gb|AES80065.1| Flap endonuclease GEN-like
           protein [Medicago truncatula]
          Length = 612

 Score =  189 bits (480), Expect(2) = 1e-66
 Identities = 92/136 (67%), Positives = 108/136 (79%), Gaps = 3/136 (2%)
 Frame = +1

Query: 1   TINLFSKLGAFPVFVTDGTPSPLKARARMERFYRLTGLDVRKV---EDGVSVERNRAFQK 171
           TINLFSK GAFPVFV DGTPSPLK++AR+ RF+R +G++   +   E+GVS  RN  F +
Sbjct: 59  TINLFSKFGAFPVFVVDGTPSPLKSQARIARFFRSSGIESTSLPVAEEGVSAGRNSTFSR 118

Query: 172 CVRECVXXXXXXGIPVLKARCEAEELCAQLNSEGHVDACITADSDAFLYGAKCVIKCLRP 351
           CV+ECV      GIPVLKA+ EAE LCAQLNSEGHVDACIT DSDAFL+GAKC+IK   P
Sbjct: 119 CVQECVELAKLLGIPVLKAKGEAEALCAQLNSEGHVDACITPDSDAFLFGAKCIIKSFSP 178

Query: 352 SSKEPFECYYMSDLEA 399
           +SKEPFECY MSD+EA
Sbjct: 179 NSKEPFECYNMSDIEA 194



 Score = 90.1 bits (222), Expect(2) = 1e-66
 Identities = 44/78 (56%), Positives = 59/78 (75%)
 Frame = +3

Query: 459 LGLKQVHLVAISLLVGNDHDLGGVSGIGIETALRFVRMFPEEEILNRLHDIGNGDIPLFQ 638
           LGLK+ HL+AISLLVGNDHDL GV GIGI++ALRFV+ F E++ILNRLH+IG G+     
Sbjct: 196 LGLKRKHLIAISLLVGNDHDLSGVQGIGIDSALRFVQAFGEDDILNRLHEIGKGNAFQVP 255

Query: 639 IDSRSVGDCDLPNPNENS 692
           ID ++  + D+   + N+
Sbjct: 256 IDIKAEENMDIDGNSPNT 273


>gb|ABN08837.1| Helix-hairpin-helix motif, class 2 [Medicago truncatula]
          Length = 547

 Score =  176 bits (446), Expect(2) = 1e-62
 Identities = 85/128 (66%), Positives = 101/128 (78%), Gaps = 3/128 (2%)
 Frame = +1

Query: 25  GAFPVFVTDGTPSPLKARARMERFYRLTGLDVRKV---EDGVSVERNRAFQKCVRECVXX 195
           GAFPVFV DGTPSPLK++AR+ RF+R +G++   +   E+GVS  RN  F +CV+ECV  
Sbjct: 2   GAFPVFVVDGTPSPLKSQARIARFFRSSGIESTSLPVAEEGVSAGRNSTFSRCVQECVEL 61

Query: 196 XXXXGIPVLKARCEAEELCAQLNSEGHVDACITADSDAFLYGAKCVIKCLRPSSKEPFEC 375
               GIPVLKA+ EAE LCAQLNSEGHVDACIT DSDAFL+GAKC+IK   P+SKEPFEC
Sbjct: 62  AKLLGIPVLKAKGEAEALCAQLNSEGHVDACITPDSDAFLFGAKCIIKSFSPNSKEPFEC 121

Query: 376 YYMSDLEA 399
           Y MSD+EA
Sbjct: 122 YNMSDIEA 129



 Score = 90.1 bits (222), Expect(2) = 1e-62
 Identities = 44/78 (56%), Positives = 59/78 (75%)
 Frame = +3

Query: 459 LGLKQVHLVAISLLVGNDHDLGGVSGIGIETALRFVRMFPEEEILNRLHDIGNGDIPLFQ 638
           LGLK+ HL+AISLLVGNDHDL GV GIGI++ALRFV+ F E++ILNRLH+IG G+     
Sbjct: 131 LGLKRKHLIAISLLVGNDHDLSGVQGIGIDSALRFVQAFGEDDILNRLHEIGKGNAFQVP 190

Query: 639 IDSRSVGDCDLPNPNENS 692
           ID ++  + D+   + N+
Sbjct: 191 IDIKAEENMDIDGNSPNT 208


>ref|XP_002889348.1| hypothetical protein ARALYDRAFT_311256 [Arabidopsis lyrata subsp.
           lyrata] gi|297335190|gb|EFH65607.1| hypothetical protein
           ARALYDRAFT_311256 [Arabidopsis lyrata subsp. lyrata]
          Length = 590

 Score =  186 bits (471), Expect(2) = 2e-62
 Identities = 90/136 (66%), Positives = 111/136 (81%), Gaps = 3/136 (2%)
 Frame = +1

Query: 1   TINLFSKLGAFPVFVTDGTPSPLKARARMERFYRLTGLDVRK---VEDGVSVERNRAFQK 171
           TINLFSK GA+PVFV DGTPSPLK++AR+ RF+R +G+D      ++DGVSVERN+ F +
Sbjct: 59  TINLFSKFGAYPVFVVDGTPSPLKSQARISRFFRSSGIDTCNLPVIKDGVSVERNKLFCE 118

Query: 172 CVRECVXXXXXXGIPVLKARCEAEELCAQLNSEGHVDACITADSDAFLYGAKCVIKCLRP 351
            V+ECV       IPVLKA  EAE LCAQLNSEG+VDACIT DSDAFL+GAKCVIK ++P
Sbjct: 119 WVKECVELLELLSIPVLKANGEAEALCAQLNSEGYVDACITPDSDAFLFGAKCVIKDIKP 178

Query: 352 SSKEPFECYYMSDLEA 399
           +S+EPFECY+MSD+E+
Sbjct: 179 NSREPFECYHMSDIES 194



 Score = 80.1 bits (196), Expect(2) = 2e-62
 Identities = 42/68 (61%), Positives = 49/68 (72%)
 Frame = +3

Query: 459 LGLKQVHLVAISLLVGNDHDLGGVSGIGIETALRFVRMFPEEEILNRLHDIGNGDIPLFQ 638
           LGLK+ HL+AISLLVGND+D GGV GIG++ ALR VR F E+EIL RL DIG G  P   
Sbjct: 196 LGLKRKHLIAISLLVGNDYDSGGVLGIGVDKALRIVREFSEDEILERLQDIGKGLKPTVP 255

Query: 639 IDSRSVGD 662
              +SV D
Sbjct: 256 GGIKSVDD 263