BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00005776
         (1163 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273159.1| PREDICTED: flap endonuclease GEN-like 1 [Vit...   368   1e-99
ref|XP_002511787.1| DNA binding protein, putative [Ricinus commu...   338   2e-90
gb|ABN08837.1| Helix-hairpin-helix motif, class 2 [Medicago trun...   329   7e-88
ref|XP_003623847.1| Flap endonuclease GEN-like protein [Medicago...   329   7e-88
ref|XP_004144985.1| PREDICTED: flap endonuclease GEN-like 1-like...   323   5e-86

>ref|XP_002273159.1| PREDICTED: flap endonuclease GEN-like 1 [Vitis vinifera]
            gi|296089141|emb|CBI38844.3| unnamed protein product
            [Vitis vinifera]
          Length = 667

 Score =  368 bits (945), Expect = 1e-99
 Identities = 186/347 (53%), Positives = 239/347 (68%)
 Frame = -3

Query: 1161 ENSPKTKSPHCSYCGHPGSKRAHSKVACEHCVTSGKENCTQKPPGFKCGCPTCTLDRKNK 982
            E SP+ K PHCS CGHPG K++H K +C+ C T  +  C +KP GF C C TC +DRK K
Sbjct: 324  ERSPRPKVPHCSICGHPGRKKSHLKFSCDFCGTFPRRGCLEKPEGFVCDCSTCDMDRKEK 383

Query: 981  EQKKHENWQLGVCRKISAEKNFPNDEIIEMYLKHKRGTFTDVEIPSLLWEEPKIESLIDF 802
             QKK ENWQL VC+KI+ E+NFPN+EIIE+YL +  G FT+ + P + WE PK E L+DF
Sbjct: 384  AQKKQENWQLRVCKKIAMEQNFPNNEIIELYLSNNHGHFTEKDGPHISWESPKTEVLVDF 443

Query: 801  LGYHQHWDPSYIRQRMLPLLSTNYLRKMASNPTENLLLHGQYEFDSIQRVKIRYGQPCYL 622
            L YHQHW+PSYIRQRMLP+LST + R+ A NPT N LL+GQYEFDSIQRVK+R+G   ++
Sbjct: 444  LAYHQHWEPSYIRQRMLPMLSTIFFREKALNPT-NTLLYGQYEFDSIQRVKVRFGHQFFV 502

Query: 621  VTWRKNSPALGNVSYNIEPEQFDVQEEDVLELSEANDLLDEPDVPQILVDAGCSFLLTEE 442
            V W+K   A+ +V+Y I P   D+++E + E+ E+ DLLDE +VPQI VD GC FLLT+E
Sbjct: 503  VKWKKAVHAMASVAYTI-PGDSDIEQEKLTEVDESIDLLDECNVPQIHVDDGCWFLLTDE 561

Query: 441  NMELVRAAFPGKVEKYLHXXXXXXXXXXXXXXXXXXEGEHDKFESPKSRGIQLSITEFYR 262
            NM+LVRAAFP +V ++L                   EG  +  +SPKS+G+QLSITEFYR
Sbjct: 562  NMDLVRAAFPEEVNRFL-LEKELKESKRRNKSGLRSEGVEEMPDSPKSKGVQLSITEFYR 620

Query: 261  STKTFVQAKQEEDSAKLPENPQKGHAKEKRRMATANLSKSVRRRLLF 121
            S K     K  EDSA   +   +  + EKR+ + + LSKSVRRRLLF
Sbjct: 621  SAKVIFHEK-PEDSAGNSDAQGRETSTEKRKASDSKLSKSVRRRLLF 666


>ref|XP_002511787.1| DNA binding protein, putative [Ricinus communis]
            gi|223548967|gb|EEF50456.1| DNA binding protein, putative
            [Ricinus communis]
          Length = 609

 Score =  338 bits (866), Expect = 2e-90
 Identities = 173/348 (49%), Positives = 229/348 (65%), Gaps = 1/348 (0%)
 Frame = -3

Query: 1161 ENSPKTKSPHCSYCGHPGSKRAHSKVACEHCVTSGKENCTQKPPGFKCGCPTCTLDRKNK 982
            ENS K+K  HCS+CGHPGSKRAH K +CE+C  S  E CT+K   F+C C +C  DRK K
Sbjct: 270  ENSLKSKISHCSFCGHPGSKRAHFKSSCEYCGNSNGEGCTKKSGAFRCNCGSCNKDRKAK 329

Query: 981  EQKKHENWQLGVCRKISAEKNFPNDEIIEMYLKHKRGTFTDVEIPSLLWEEPKIESLIDF 802
            E++K ENWQ+ VC K+  E NFPND+IIEMYL +    FT+ +   L W  P  + L+DF
Sbjct: 330  EEQKRENWQIKVCDKMFMEPNFPNDDIIEMYLCNNHAEFTEDDDTCLSWGSPNTDMLVDF 389

Query: 801  LGYHQHWDPSYIRQRMLPLLSTNYLRKMASNPTENLLLHGQYEFDSIQRVKIRYGQPCYL 622
            L +H+ W PSYIRQR+LP+LST YLR MA+ P E  LL+GQYEFDSIQR+K+RYG   Y+
Sbjct: 390  LAFHKLWHPSYIRQRILPVLSTIYLRDMAAKP-EKALLYGQYEFDSIQRIKVRYGHESYV 448

Query: 621  VTWRKNSPAL-GNVSYNIEPEQFDVQEEDVLELSEANDLLDEPDVPQILVDAGCSFLLTE 445
            + W+K +  +  N+  NI  E+ D  +ED+++  E+ D L+E +VP+  VD GC FLLT+
Sbjct: 449  IKWKKAANTISSNICINI-VEELDKHQEDIVKTDESIDQLEEYNVPKSYVDDGCWFLLTD 507

Query: 444  ENMELVRAAFPGKVEKYLHXXXXXXXXXXXXXXXXXXEGEHDKFESPKSRGIQLSITEFY 265
            ENM+LV+ AFP  V+K+L                       +K ES KS+G+QL+ITEFY
Sbjct: 508  ENMDLVQNAFPDAVDKFL-------KEKEQKESKRRLSSSTEKSESVKSKGVQLNITEFY 560

Query: 264  RSTKTFVQAKQEEDSAKLPENPQKGHAKEKRRMATANLSKSVRRRLLF 121
            RSTK    A   E+ A   EN     + EKR+++++NL KSVRRRLLF
Sbjct: 561  RSTKVQFAASGGEEQADCSENQDDVISTEKRKISSSNLPKSVRRRLLF 608


>gb|ABN08837.1| Helix-hairpin-helix motif, class 2 [Medicago truncatula]
          Length = 547

 Score =  329 bits (844), Expect = 7e-88
 Identities = 165/349 (47%), Positives = 230/349 (65%), Gaps = 2/349 (0%)
 Frame = -3

Query: 1158 NSPKTKSPHCSYCGHPGSKRAHSKVACEHCVTSGKENCTQKPPGFKCGCPTCTLDRKNKE 979
            NSP TK  HCS+CGHPG+KR H K +CE CV    E C +KP GFKC C +C ++RK+KE
Sbjct: 204  NSPNTKQTHCSFCGHPGNKRDHMKFSCEFCVADDNEGCLKKPEGFKCDCNSCCMNRKHKE 263

Query: 978  QKKHENWQLGVCRKISAEKNFPNDEIIEMYLKHKRGTFTDVEIPSLLWEEPKIESLIDFL 799
            QKK ENW   +C KI+ E NFP DEII+MYL +  G F+  + P + WE P ++ L+DFL
Sbjct: 264  QKKMENWHTKICDKIAKEPNFPKDEIIDMYLCNDNGYFSANDGPQISWERPNMDLLVDFL 323

Query: 798  GYHQHWDPSYIRQRMLPLLSTNYLRKMASNPTENLLLHGQYEFDSIQRVKIRYGQPCYLV 619
             +HQ+WDPSYIR+ M P++ST +LR+MA+ PT++LL  GQ+EF S++RVK RYG   Y+V
Sbjct: 324  NFHQNWDPSYIRRIMFPMMSTIFLREMATTPTDSLLF-GQFEFASLKRVKTRYGYQFYVV 382

Query: 618  TWRKNSPALGNVSYNIEPEQFDVQEEDV-LELSEANDLLDEPDVPQILVDAGCSFLLTEE 442
             W++   A+GN++      +  +QE+ + L++ E  DLLD+ D PQI  + GCSFLLT+E
Sbjct: 383  KWKR---AMGNIASKTPANKSGMQEDVIELDVDETVDLLDDCDFPQICEEDGCSFLLTDE 439

Query: 441  NMELVRAAFPGKVEKYLHXXXXXXXXXXXXXXXXXXEGEHDKFESPKSRGIQLSITEFYR 262
            NM+LV AA+P +V+++                    E E     SP S+G+QL+ITEF+ 
Sbjct: 440  NMDLVGAAYPEEVKRFRQEQELKDVKRKKNPTSISQENEKSS-TSPNSKGVQLNITEFFP 498

Query: 261  STKTFVQAKQ-EEDSAKLPENPQKGHAKEKRRMATANLSKSVRRRLLFD 118
            +TK+    K  EE S+   +N   G +K KR+ ++ N+ KSVRRRLLFD
Sbjct: 499  TTKSKHNPKHGEESSSNKNDNQDSGGSKPKRKSSSPNIPKSVRRRLLFD 547


>ref|XP_003623847.1| Flap endonuclease GEN-like protein [Medicago truncatula]
            gi|124360235|gb|ABN08248.1| Helix-hairpin-helix motif,
            class 2 [Medicago truncatula] gi|355498862|gb|AES80065.1|
            Flap endonuclease GEN-like protein [Medicago truncatula]
          Length = 612

 Score =  329 bits (844), Expect = 7e-88
 Identities = 165/349 (47%), Positives = 230/349 (65%), Gaps = 2/349 (0%)
 Frame = -3

Query: 1158 NSPKTKSPHCSYCGHPGSKRAHSKVACEHCVTSGKENCTQKPPGFKCGCPTCTLDRKNKE 979
            NSP TK  HCS+CGHPG+KR H K +CE CV    E C +KP GFKC C +C ++RK+KE
Sbjct: 269  NSPNTKQTHCSFCGHPGNKRDHMKFSCEFCVADDNEGCLKKPEGFKCDCNSCCMNRKHKE 328

Query: 978  QKKHENWQLGVCRKISAEKNFPNDEIIEMYLKHKRGTFTDVEIPSLLWEEPKIESLIDFL 799
            QKK ENW   +C KI+ E NFP DEII+MYL +  G F+  + P + WE P ++ L+DFL
Sbjct: 329  QKKMENWHTKICDKIAKEPNFPKDEIIDMYLCNDNGYFSANDGPQISWERPNMDLLVDFL 388

Query: 798  GYHQHWDPSYIRQRMLPLLSTNYLRKMASNPTENLLLHGQYEFDSIQRVKIRYGQPCYLV 619
             +HQ+WDPSYIR+ M P++ST +LR+MA+ PT++LL  GQ+EF S++RVK RYG   Y+V
Sbjct: 389  NFHQNWDPSYIRRIMFPMMSTIFLREMATTPTDSLLF-GQFEFASLKRVKTRYGYQFYVV 447

Query: 618  TWRKNSPALGNVSYNIEPEQFDVQEEDV-LELSEANDLLDEPDVPQILVDAGCSFLLTEE 442
             W++   A+GN++      +  +QE+ + L++ E  DLLD+ D PQI  + GCSFLLT+E
Sbjct: 448  KWKR---AMGNIASKTPANKSGMQEDVIELDVDETVDLLDDCDFPQICEEDGCSFLLTDE 504

Query: 441  NMELVRAAFPGKVEKYLHXXXXXXXXXXXXXXXXXXEGEHDKFESPKSRGIQLSITEFYR 262
            NM+LV AA+P +V+++                    E E     SP S+G+QL+ITEF+ 
Sbjct: 505  NMDLVGAAYPEEVKRFRQEQELKDVKRKKNPTSISQENEKSS-TSPNSKGVQLNITEFFP 563

Query: 261  STKTFVQAKQ-EEDSAKLPENPQKGHAKEKRRMATANLSKSVRRRLLFD 118
            +TK+    K  EE S+   +N   G +K KR+ ++ N+ KSVRRRLLFD
Sbjct: 564  TTKSKHNPKHGEESSSNKNDNQDSGGSKPKRKSSSPNIPKSVRRRLLFD 612


>ref|XP_004144985.1| PREDICTED: flap endonuclease GEN-like 1-like [Cucumis sativus]
            gi|449472478|ref|XP_004153607.1| PREDICTED: flap
            endonuclease GEN-like 1-like [Cucumis sativus]
            gi|449516535|ref|XP_004165302.1| PREDICTED: flap
            endonuclease GEN-like 1-like [Cucumis sativus]
          Length = 606

 Score =  323 bits (828), Expect = 5e-86
 Identities = 167/347 (48%), Positives = 224/347 (64%)
 Frame = -3

Query: 1158 NSPKTKSPHCSYCGHPGSKRAHSKVACEHCVTSGKENCTQKPPGFKCGCPTCTLDRKNKE 979
            NS K K  HCS+CGHPGSKRAH K  CE+C  S  E C +KP GFKC C +C +DR+ KE
Sbjct: 271  NSRKIKCSHCSFCGHPGSKRAHIKFPCEYCDVSHGEGCIKKPDGFKCNCSSCNMDREEKE 330

Query: 978  QKKHENWQLGVCRKISAEKNFPNDEIIEMYLKHKRGTFTDVEIPSLLWEEPKIESLIDFL 799
            +KK ENW+L V  KI+ E NFP+ E+I+MY       F+D ++  L W  P+ E L+DFL
Sbjct: 331  KKKQENWRLRVRNKIAMEPNFPSSELIQMYQCDNHSYFSDDDL-VLSWGSPRTEMLVDFL 389

Query: 798  GYHQHWDPSYIRQRMLPLLSTNYLRKMASNPTENLLLHGQYEFDSIQRVKIRYGQPCYLV 619
             +H  W+PSYIRQRMLP+LST +LR+MA+NPT+  LL+GQYEFDSI R KIRYG   Y+V
Sbjct: 390  VFHLQWEPSYIRQRMLPMLSTIFLREMANNPTQT-LLYGQYEFDSILREKIRYGHSFYVV 448

Query: 618  TWRKNSPALGNVSYNIEPEQFDVQEEDVLELSEANDLLDEPDVPQILVDAGCSFLLTEEN 439
             W+K  PA+ + +Y     +F    +D +++ EA +L DE D P+I +  GCSFLLT+EN
Sbjct: 449  KWKKAVPAISS-TYEDSSGEFGTGPDDAIDVDEAVNLTDESDSPKIHIQDGCSFLLTDEN 507

Query: 438  MELVRAAFPGKVEKYLHXXXXXXXXXXXXXXXXXXEGEHDKFESPKSRGIQLSITEFYRS 259
            MELV AA+P +  K+L                        K +S K++G+QLSITEFYR+
Sbjct: 508  MELVAAAYPEQAAKFLQEKEMKRQKTPSTPACE----TSGKSDSSKAKGVQLSITEFYRA 563

Query: 258  TKTFVQAKQEEDSAKLPENPQKGHAKEKRRMATANLSKSVRRRLLFD 118
            TKT    +Q  D+  L    ++    +++  +++ LSKSVRRRLLFD
Sbjct: 564  TKT----QQTADTTDLTNEDEETSTGKRKASSSSTLSKSVRRRLLFD 606