BLASTX nr result
ID: Coptis24_contig00005747
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00005747
(1387 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002267722.2| PREDICTED: uncharacterized protein LOC100262... 298 2e-78
emb|CBI23148.3| unnamed protein product [Vitis vinifera] 298 2e-78
ref|XP_002513558.1| ring finger protein, putative [Ricinus commu... 287 4e-75
ref|XP_002321438.1| predicted protein [Populus trichocarpa] gi|2... 287 5e-75
ref|XP_002302627.1| predicted protein [Populus trichocarpa] gi|2... 260 7e-67
>ref|XP_002267722.2| PREDICTED: uncharacterized protein LOC100262465 [Vitis vinifera]
Length = 1054
Score = 298 bits (764), Expect = 2e-78
Identities = 156/327 (47%), Positives = 209/327 (63%), Gaps = 5/327 (1%)
Frame = +2
Query: 128 EPKIHFPFGVNGDERQSCGYPGFNLSCNNN-GTVLDLGSSGKFMVRGIDYVTRAVAIYDQ 304
E +I FPF + + +SCGYPGF+LSC+ T+L L SG+F V+GIDY T+ + I D
Sbjct: 17 ELEIRFPFRLEDHQPESCGYPGFDLSCDATMQTILKL-PSGEFSVQGIDYGTQEIWINDP 75
Query: 305 ENCLPKRLMNLNLSNSPFKSAYSWYVGFYNCSSPPDPSYRIEPIPCLSTSNYSIYATTSP 484
+NCLP+ +++LNLS S F+ Y F+ CS+ YR++ I CLS NY+++AT S
Sbjct: 76 KNCLPRLILSLNLSGSSFRGVYYHNYSFFKCSA----DYRLDSIACLSDDNYTVFATDSS 131
Query: 485 NPT--IIPSCEFINSVAVPAWPVYPFGYPA--VDIYKHLFLMWDAPDCTECVVRGGQCGF 652
+ P C+ I SV VPA PF P D+ L L W AP C +C + GG+CGF
Sbjct: 132 RVINFLSPVCDLIKSVMVPA--ELPFYDPVWTSDLSSDLLLSWGAPRCGDCEMEGGRCGF 189
Query: 653 KNSKSSEVECFNLRKRGLPWAVKYVISIGIGIPTFVCIILIACYICGRFKQSYGHGNSHR 832
+++ S E+ CF++ KRGLP +Y I++G+GIP +C + + C++CGR K G R
Sbjct: 190 RSNSSLEIGCFDVPKRGLPRTARYAITVGVGIPALMCFVGLLCFLCGRVKAFGG-----R 244
Query: 833 NRHSHFDTSSVLPQPAIFVVGLDEAIIKSYPKTVLGESRRLDKPEDSICTICLSEYRAKE 1012
R TS V PQP V+GLD I+SYPK VLGESRRL KP+D+ C+ICLSEYR KE
Sbjct: 245 RRPIAEFTSMVTPQPTA-VMGLDGPTIESYPKVVLGESRRLPKPDDNTCSICLSEYRPKE 303
Query: 1013 TLKTIPDCKHFFHSACIDEWLRRNVTC 1093
TLK IP+C+H FHS CIDEWL N +C
Sbjct: 304 TLKIIPECQHCFHSECIDEWLHLNASC 330
Score = 105 bits (262), Expect = 3e-20
Identities = 76/245 (31%), Positives = 121/245 (49%), Gaps = 13/245 (5%)
Frame = +2
Query: 122 EREPKIHFPFGVNGDERQSCGYPGFNLSCNNNG-TVLDLGSSGKFMVRGIDYVTRAVAIY 298
++ P I FPF + D+ CGYPGF LSC TVLDL S K +V+ IDY T+ + +
Sbjct: 490 DKGPLIRFPFRLK-DQPDHCGYPGFELSCTEKKQTVLDLPYSVKLLVKKIDYTTQEIRVQ 548
Query: 299 DQENCLPKRLMNLNLSNSPF----KSAYSWY--VGFYNCS-SPPDPSYRIEPIPCLSTSN 457
D +NCLP++L NL+L+ SPF ++++ ++ F NCS + Y + IPCLS
Sbjct: 549 DPDNCLPRQLQNLDLAGSPFQFELENSWDYFRDFTFVNCSVNKSANQYNLRSIPCLSVPG 608
Query: 458 YSIYATTSPNPTI----IPSCEFINSVAVPAWPVYPFGYPAVDIYKHLFLMWDAPDCTEC 625
+YA S N + + SC I ++++P + + +P + W C +C
Sbjct: 609 NLVYAILS-NADLGDFDLSSCRKIYNISLP-YRMSNNSFP---------MSWSKSICGKC 657
Query: 626 VVRGGQCGFKNSKSSEV-ECFNLRKRGLPWAVKYVISIGIGIPTFVCIILIACYICGRFK 802
G +C K++ + V EC K G SI +G V ++++ Y+ + K
Sbjct: 658 EAEGKKCRLKSNNTEPVTECIEKPKTG---------SI-VGSFLLVLVVIVLYYVYTKNK 707
Query: 803 QSYGH 817
H
Sbjct: 708 SRKDH 712
>emb|CBI23148.3| unnamed protein product [Vitis vinifera]
Length = 381
Score = 298 bits (764), Expect = 2e-78
Identities = 156/327 (47%), Positives = 209/327 (63%), Gaps = 5/327 (1%)
Frame = +2
Query: 128 EPKIHFPFGVNGDERQSCGYPGFNLSCNNN-GTVLDLGSSGKFMVRGIDYVTRAVAIYDQ 304
E +I FPF + + +SCGYPGF+LSC+ T+L L SG+F V+GIDY T+ + I D
Sbjct: 46 ELEIRFPFRLEDHQPESCGYPGFDLSCDATMQTILKL-PSGEFSVQGIDYGTQEIWINDP 104
Query: 305 ENCLPKRLMNLNLSNSPFKSAYSWYVGFYNCSSPPDPSYRIEPIPCLSTSNYSIYATTSP 484
+NCLP+ +++LNLS S F+ Y F+ CS+ YR++ I CLS NY+++AT S
Sbjct: 105 KNCLPRLILSLNLSGSSFRGVYYHNYSFFKCSA----DYRLDSIACLSDDNYTVFATDSS 160
Query: 485 NPT--IIPSCEFINSVAVPAWPVYPFGYPA--VDIYKHLFLMWDAPDCTECVVRGGQCGF 652
+ P C+ I SV VPA PF P D+ L L W AP C +C + GG+CGF
Sbjct: 161 RVINFLSPVCDLIKSVMVPA--ELPFYDPVWTSDLSSDLLLSWGAPRCGDCEMEGGRCGF 218
Query: 653 KNSKSSEVECFNLRKRGLPWAVKYVISIGIGIPTFVCIILIACYICGRFKQSYGHGNSHR 832
+++ S E+ CF++ KRGLP +Y I++G+GIP +C + + C++CGR K G R
Sbjct: 219 RSNSSLEIGCFDVPKRGLPRTARYAITVGVGIPALMCFVGLLCFLCGRVKAFGG-----R 273
Query: 833 NRHSHFDTSSVLPQPAIFVVGLDEAIIKSYPKTVLGESRRLDKPEDSICTICLSEYRAKE 1012
R TS V PQP V+GLD I+SYPK VLGESRRL KP+D+ C+ICLSEYR KE
Sbjct: 274 RRPIAEFTSMVTPQPTA-VMGLDGPTIESYPKVVLGESRRLPKPDDNTCSICLSEYRPKE 332
Query: 1013 TLKTIPDCKHFFHSACIDEWLRRNVTC 1093
TLK IP+C+H FHS CIDEWL N +C
Sbjct: 333 TLKIIPECQHCFHSECIDEWLHLNASC 359
>ref|XP_002513558.1| ring finger protein, putative [Ricinus communis]
gi|223547466|gb|EEF48961.1| ring finger protein, putative
[Ricinus communis]
Length = 377
Score = 287 bits (735), Expect = 4e-75
Identities = 147/329 (44%), Positives = 207/329 (62%), Gaps = 7/329 (2%)
Frame = +2
Query: 128 EPKIHFPFGVNGDERQSCGYPGFNLSC--NNNGTVLDLGSSGKFMVRGIDYVTRAVAIYD 301
EP I FPF + + +SCGYPGF++SC N N T+L+L SG F V+ IDY T+ + I D
Sbjct: 35 EPVIRFPFRIENRQFKSCGYPGFDVSCDTNTNHTLLELPYSGTFTVQAIDYATQELWIND 94
Query: 302 QENCLPKRLMNLNLSNSPFKSAYSWYVGFYNCSSPPDPSYRIEPIPCLSTSNYSIYATTS 481
NCLPKR+++LNLSNSPF + F+NCS ++++ PI CLS+S +++AT+S
Sbjct: 95 PNNCLPKRILSLNLSNSPFVGLFYQNFTFFNCSLTNYTNFQLNPIACLSSSTNTVFATSS 154
Query: 482 ----PNPTIIPSCEFINSVAVPA-WPVYPFGYPAVDIYKHLFLMWDAPDCTECVVRGGQC 646
+ + + SCE S+ VP WP Y + D+ L L W P C +C GG+C
Sbjct: 155 LRVINHLSGLSSCEAFASMEVPVEWPFYG-QILSSDLSDDLRLTWAVPRCGKCESHGGRC 213
Query: 647 GFKNSKSSEVECFNLRKRGLPWAVKYVISIGIGIPTFVCIILIACYICGRFKQSYGHGNS 826
G +++ S + C N + RG+P + +Y+I+IG GIP +C++ + C+IC R G S
Sbjct: 214 GPRSNSSRLIVCANPKLRGIPKSARYIITIGGGIPVALCVLGLLCFICNRASYYTGRRRS 273
Query: 827 HRNRHSHFDTSSVLPQPAIFVVGLDEAIIKSYPKTVLGESRRLDKPEDSICTICLSEYRA 1006
H S+F + QP + GLD ++SYPK VLGESRRL KP+D C+ICLSEY+
Sbjct: 274 HLFPESNFVVNQ---QPTVSARGLDGQTLESYPKIVLGESRRLPKPDDITCSICLSEYKP 330
Query: 1007 KETLKTIPDCKHFFHSACIDEWLRRNVTC 1093
KETLKTIP+C+H FH+ CIDEWL+ N +C
Sbjct: 331 KETLKTIPECQHCFHADCIDEWLKLNASC 359
>ref|XP_002321438.1| predicted protein [Populus trichocarpa] gi|222868434|gb|EEF05565.1|
predicted protein [Populus trichocarpa]
Length = 384
Score = 287 bits (734), Expect = 5e-75
Identities = 161/360 (44%), Positives = 213/360 (59%), Gaps = 18/360 (5%)
Frame = +2
Query: 68 YTNFATSQKNCPVRCGGDEREPKIHFPFGVNGDERQSCGYPGFNLSC-NNNGTVLDLGSS 244
Y N ATSQ C +R + EP I FPF + + ++CGYPGF++SC ++N T+L+L SS
Sbjct: 20 YLNIATSQNLC-LRTACNRSEPVIRFPFRIQNRQSKACGYPGFDISCGSSNETMLELHSS 78
Query: 245 GKFMVRGIDYVTRAVAIYDQENCLPKRLMNLNLSNSPFKSAYSWYVGFYNCSSPPDPSYR 424
GKF+V+ IDY T+ + I DQ NCL R+++LNL SPF Y F+NCSS Y
Sbjct: 79 GKFVVQAIDYATQEIWINDQGNCLADRILSLNLFGSPFIGLYYQSFTFFNCSSSDYRKYG 138
Query: 425 IEPIPCLSTSNYSIYATTSPNPTIIPS-------CEFINSVAVPA-WPVYPFGYPAVDIY 580
+ PI CLS S Y+++AT+ N T++ S C I V VP WP Y + D+
Sbjct: 139 LNPIACLSGSTYTVFATS--NSTVVSSLQNGNSSCNLIRVVPVPVDWPFYQ-QISSSDLS 195
Query: 581 KHLFLMWDAPDCTECVVRGGQCGFKNSKSSEVECFNLRKR------GLPWAVKYVISIGI 742
+ L L W+ PDC +C RGG+C K + SS+V C NL + P + Y I
Sbjct: 196 EDLHLTWEEPDCGKCESRGGRCALKIN-SSKVVCSNLPRHVATTWSEFPRSALYAIITAA 254
Query: 743 GIPTFVCIILIACYICGRFK---QSYGHGNSHRNRHSHFDTSSVLPQPAIFVVGLDEAII 913
GIP + ++ + C+ICGR K +S S DT SV + + GLD I
Sbjct: 255 GIPGALILVGLLCFICGRVKYCDRSSSESGGLPEVDSTVDTESV-----VIIAGLDGPTI 309
Query: 914 KSYPKTVLGESRRLDKPEDSICTICLSEYRAKETLKTIPDCKHFFHSACIDEWLRRNVTC 1093
+SYPK VLGESRRL KP+D+ C+ICL EY+ KETLKTIP+CKH FHS CIDEWLR N +C
Sbjct: 310 ESYPKIVLGESRRLPKPDDNTCSICLCEYKPKETLKTIPECKHCFHSDCIDEWLRLNASC 369
>ref|XP_002302627.1| predicted protein [Populus trichocarpa] gi|222844353|gb|EEE81900.1|
predicted protein [Populus trichocarpa]
Length = 373
Score = 260 bits (664), Expect = 7e-67
Identities = 144/329 (43%), Positives = 201/329 (61%), Gaps = 10/329 (3%)
Frame = +2
Query: 137 IHFPFGVNGDERQSCGYPGFNLSCNN-NGTVLDLGSSGKFMVRGIDYVTRAVAIYDQENC 313
+ FPF + G + ++CGYPGF+LSCNN + TVL L SG F+VR I+Y+T+ + +YD +NC
Sbjct: 34 VRFPFRIEGQQPRNCGYPGFDLSCNNQSSTVLKLPHSGDFLVRDINYLTQQIQLYDSDNC 93
Query: 314 LPKRLMNLNLSNSPFKSAYSWYVGFYNCSSPPDPSYRIEPIPCLSTSNYSIYATTSPNPT 493
L KRL+ LNLS SPF + F +C + S R I CLS S S+ AT+S N
Sbjct: 94 LAKRLLQLNLSGSPFLGFFHQNYTFLSCPTQLVKS-RFTTINCLSNSTISVLATSSLNLV 152
Query: 494 --IIPSCEFINSVAVP-AWPV-YPFGYPAVDIYKHLFLMWDAPDCTECVVRGGQCGFKNS 661
+ SC+ I+++ +P +WPV Y G+ + D+ ++L L W +PDC +C +G CGF +
Sbjct: 153 NEMSSSCDVISTLKIPVSWPVKYNEGFTS-DLSENLLLTWFSPDCNKCETQGSMCGFHGN 211
Query: 662 KSSEVECFNLRKRGLPWAVKYVISIGI---GIPTFVCI--ILIACYICGRFKQSYGHGNS 826
S E+ CF K+G + V I I GIP VC I I+ Y+ ++ +
Sbjct: 212 ASQEIGCFYDSKKGKSASDLRVFGIFILLIGIPVLVCASGIAISLYLMPWHPRTNEANAT 271
Query: 827 HRNRHSHFDTSSVLPQPAIFVVGLDEAIIKSYPKTVLGESRRLDKPEDSICTICLSEYRA 1006
RN ++V PQP I V+GLDE+ I+S+ K VLGES+RL P S C ICLSEY +
Sbjct: 272 QRNS----TIAAVSPQPTILVLGLDESTIESFDKLVLGESKRLPGPNGSTCAICLSEYNS 327
Query: 1007 KETLKTIPDCKHFFHSACIDEWLRRNVTC 1093
KET++ IP+CKH FH+ C+DEWLR N TC
Sbjct: 328 KETVRIIPECKHCFHADCVDEWLRMNSTC 356