BLASTX nr result

ID: Coptis24_contig00005735 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00005735
         (1191 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269190.1| PREDICTED: putative expansin-B2 [Vitis vinif...   348   2e-93
gb|ABC47128.1| beta expansin 2 precursor [Solanum tuberosum]          328   1e-87
ref|NP_001233766.1| beta expansin precursor [Solanum lycopersicu...   323   4e-86
ref|NP_001234859.1| beta-expansin precursor [Solanum lycopersicu...   308   1e-81
gb|ABC47127.1| beta expansin 1 precursor [Solanum tuberosum]          308   1e-81

>ref|XP_002269190.1| PREDICTED: putative expansin-B2 [Vitis vinifera]
           gi|297743578|emb|CBI36445.3| unnamed protein product
           [Vitis vinifera]
          Length = 279

 Score =  348 bits (893), Expect = 2e-93
 Identities = 174/252 (69%), Positives = 187/252 (74%), Gaps = 2/252 (0%)
 Frame = +1

Query: 172 ELCFCFHAKRSTLSTMATNWSPARATWXXXXXXXXXXXXXXXXXQAVSQSPFSSLITAAG 351
           E C  F  K   LS   T+W+ A ATW                  AVSQ PFSS+IT  G
Sbjct: 28  ETCHSFKPKYFNLSRAGTHWASAGATWYGSPEGAGSDGGSCGYGNAVSQPPFSSMITGIG 87

Query: 352 PSLYQSGKECGACYRVKCTN--HPSCSGSPVRVVITDSCPGGPCASDSAHFDLSGTAFGA 525
           PSLY+SGKECGACY+VKCT   HPSCSG PVRVVITD CPGGPCAS SAHFDLSGTAFGA
Sbjct: 88  PSLYKSGKECGACYQVKCTKRMHPSCSGRPVRVVITDFCPGGPCASQSAHFDLSGTAFGA 147

Query: 526 MARPGQEEQLRGAGVLDINYARVACDYSGTTITFRVDAGSNSNYFAVVVEFEEGDGDLAG 705
           MA PGQEE+LR  GVL+I YARVACDYSG TI F VD G+N N F+V+VEFEEGDGDLAG
Sbjct: 148 MAIPGQEEKLRNVGVLEIRYARVACDYSGKTIAFHVDLGANPNSFSVLVEFEEGDGDLAG 207

Query: 706 VALREESNESMAWREMQQSWGVVWKLDAGSELHAPFSIRLKSQYSGQTLVATNVIPQGWK 885
           VAL+E    S  WR MQQSWG VWKLDAG EL  PFSI+L SQYSGQTLVA NVIP GWK
Sbjct: 208 VALKETLKGSGKWRAMQQSWGAVWKLDAGYELKPPFSIQLTSQYSGQTLVAKNVIPDGWK 267

Query: 886 PGGTYRSLVNFL 921
           PG TYRSLVN+L
Sbjct: 268 PGSTYRSLVNYL 279


>gb|ABC47128.1| beta expansin 2 precursor [Solanum tuberosum]
          Length = 279

 Score =  328 bits (842), Expect = 1e-87
 Identities = 164/251 (65%), Positives = 184/251 (73%), Gaps = 5/251 (1%)
 Frame = +1

Query: 181 FCFHAKRSTLSTMATNWSPARATWXXXXXXXXXXXXXXXXXQAVSQSPFSSLITAAGPSL 360
           F +  K   LST AT+W  A ATW                  AVSQ+PFSS +T  GPSL
Sbjct: 27  FGYKPKHFNLSTHATHWGTAGATWYGSPHGAGSDGGSCGYGSAVSQAPFSSFVTGIGPSL 86

Query: 361 YQSGKECGACYRVKCTN--HPSCSGSPVRVVITDSCPGGPCASDSAHFDLSGTAFGAMAR 534
           Y+SGKECGACY+VKCT   H SCSG  VRVVITD CPGGPC + SAHFDLSGTAFG+MA 
Sbjct: 87  YKSGKECGACYQVKCTKKMHGSCSGKGVRVVITDFCPGGPCVAQSAHFDLSGTAFGSMAI 146

Query: 535 PGQEEQLRGAGVLDINYARVACDYSGTTITFRVDAGSNSNYFAVVVEFEEGDGDLAGVAL 714
           PGQE++LR AGVL I YARVACDYS   I F VD GSNS YFAVV+EFEEGDGDLA V L
Sbjct: 147 PGQEQKLRDAGVLQIRYARVACDYSRKNIVFHVDQGSNSEYFAVVIEFEEGDGDLAKVEL 206

Query: 715 REESN---ESMAWREMQQSWGVVWKLDAGSELHAPFSIRLKSQYSGQTLVATNVIPQGWK 885
           +E+ +   ++  WR+MQQSWG VWKLDAGSELH PFSIRL SQYS Q L+A NVIP GW+
Sbjct: 207 KEKISSITKNSKWRQMQQSWGAVWKLDAGSELHPPFSIRLTSQYSDQILIAKNVIPTGWQ 266

Query: 886 PGGTYRSLVNF 918
           PG TYRSLVN+
Sbjct: 267 PGATYRSLVNY 277


>ref|NP_001233766.1| beta expansin precursor [Solanum lycopersicum]
           gi|81367673|gb|ABB71677.1| beta expansin precursor
           [Solanum lycopersicum]
          Length = 285

 Score =  323 bits (829), Expect = 4e-86
 Identities = 162/257 (63%), Positives = 183/257 (71%), Gaps = 11/257 (4%)
 Frame = +1

Query: 181 FCFHAKRSTLSTMATNWSPARATWXXXXXXXXXXXXXXXXXQAVSQSPFSSLITAAGPSL 360
           F +  K   LST AT+W  A ATW                  AVS++P SS +T  GPSL
Sbjct: 27  FGYKPKHFNLSTHATHWGTAGATWYGSPHGAGSDGGSCGYGSAVSEAPLSSFVTGIGPSL 86

Query: 361 YQSGKECGACYRVKCTN--HPSCSGSPVRVVITDSCPGGPCASDSAHFDLSGTAFGAMAR 534
           Y+SGKECGACY+VKCT   H SCSG  VRVVITD CPGGPC + SAHFDLSGTAFGAMA 
Sbjct: 87  YKSGKECGACYQVKCTKKMHRSCSGKGVRVVITDFCPGGPCVAQSAHFDLSGTAFGAMAI 146

Query: 535 PGQEEQLRGAGVLDINYARVACDYSGTTITFRVDAGSNSNYFAVVVEFEEGDGDLAGVAL 714
           PGQE++LR AGVL I YARVACDYS   I F VD GSNS YFAVV+EFE+GDGDLA V L
Sbjct: 147 PGQEQKLRDAGVLQIRYARVACDYSRKNIVFHVDQGSNSEYFAVVIEFEQGDGDLAKVEL 206

Query: 715 REESNESM---------AWREMQQSWGVVWKLDAGSELHAPFSIRLKSQYSGQTLVATNV 867
           +E+ + S+          WR+MQQSWG VWKLDAGS+LH PFSIRL SQYS Q L+A NV
Sbjct: 207 KEKRSSSIISRGNKNNYKWRQMQQSWGAVWKLDAGSKLHPPFSIRLTSQYSDQILIANNV 266

Query: 868 IPQGWKPGGTYRSLVNF 918
           IP GW+PG TYRSLVN+
Sbjct: 267 IPTGWQPGATYRSLVNY 283


>ref|NP_001234859.1| beta-expansin precursor [Solanum lycopersicum]
           gi|82569705|gb|ABB83474.1| beta-expansin precursor
           [Solanum lycopersicum]
          Length = 275

 Score =  308 bits (790), Expect = 1e-81
 Identities = 151/249 (60%), Positives = 182/249 (73%), Gaps = 2/249 (0%)
 Frame = +1

Query: 178 CFCFHAKRSTLSTMATN--WSPARATWXXXXXXXXXXXXXXXXXQAVSQSPFSSLITAAG 351
           C C H KR  +S + +N  WSP  ATW                  AV Q PFSSLI AAG
Sbjct: 27  CSCLHPKRFNVSKVQSNSDWSPPGATWYGSPSGAGSDGGACGYTNAVDQPPFSSLIAAAG 86

Query: 352 PSLYQSGKECGACYRVKCTNHPSCSGSPVRVVITDSCPGGPCASDSAHFDLSGTAFGAMA 531
           PSL++SGK CGACY+VKCT + +CSG PVRVVITDSCPGGPC S+SAHFDLSGT+FGAMA
Sbjct: 87  PSLFKSGKGCGACYQVKCTGNKACSGKPVRVVITDSCPGGPCLSESAHFDLSGTSFGAMA 146

Query: 532 RPGQEEQLRGAGVLDINYARVACDYSGTTITFRVDAGSNSNYFAVVVEFEEGDGDLAGVA 711
             GQ +QLR AGV+ I Y RV C+Y G  +TF VD+GSNSNYFA +VE+E+GDGDL  V 
Sbjct: 147 ISGQADQLRNAGVIQIQYKRVECNYPGVKLTFHVDSGSNSNYFAALVEYEDGDGDLNSVD 206

Query: 712 LREESNESMAWREMQQSWGVVWKLDAGSELHAPFSIRLKSQYSGQTLVATNVIPQGWKPG 891
           L+ ++ +S +W+ MQQSWG VWKLD+GS L APFS++L  + SGQT+VA  VIP GW+PG
Sbjct: 207 LK-QALDSESWQPMQQSWGAVWKLDSGSSLVAPFSLKLTGE-SGQTVVANGVIPAGWQPG 264

Query: 892 GTYRSLVNF 918
            TYRS+VNF
Sbjct: 265 KTYRSVVNF 273


>gb|ABC47127.1| beta expansin 1 precursor [Solanum tuberosum]
          Length = 276

 Score =  308 bits (790), Expect = 1e-81
 Identities = 152/250 (60%), Positives = 185/250 (74%), Gaps = 3/250 (1%)
 Frame = +1

Query: 178 CFCFHAKR-STLSTMATN--WSPARATWXXXXXXXXXXXXXXXXXQAVSQSPFSSLITAA 348
           C CFH KR + +S + +N  WSPA ATW                  AV Q PFSSLI AA
Sbjct: 27  CSCFHPKRLNNVSKIQSNSDWSPAGATWYGSPSGAGSDGGACGYTNAVDQPPFSSLIAAA 86

Query: 349 GPSLYQSGKECGACYRVKCTNHPSCSGSPVRVVITDSCPGGPCASDSAHFDLSGTAFGAM 528
           GPSL++SGK CGACY+VKCT + +CSG PVRVVITDSCPGGPC S+SAHFDLSGT+FGAM
Sbjct: 87  GPSLFKSGKGCGACYQVKCTGNKACSGKPVRVVITDSCPGGPCLSESAHFDLSGTSFGAM 146

Query: 529 ARPGQEEQLRGAGVLDINYARVACDYSGTTITFRVDAGSNSNYFAVVVEFEEGDGDLAGV 708
           A  GQ +QLR AGVL + Y RV C+Y G  +TF VD+GSNSNYFA +VE+E+GDGDL  V
Sbjct: 147 AISGQADQLRNAGVLQVQYKRVECNYPGVKLTFHVDSGSNSNYFAALVEYEDGDGDLNRV 206

Query: 709 ALREESNESMAWREMQQSWGVVWKLDAGSELHAPFSIRLKSQYSGQTLVATNVIPQGWKP 888
            L+ ++ +S +W+ MQQSWG VWKLD+GS L APFS++L  + SGQT+VA  VIP GW+P
Sbjct: 207 DLK-QALDSESWQPMQQSWGAVWKLDSGSSLVAPFSLKLTGE-SGQTVVANGVIPAGWQP 264

Query: 889 GGTYRSLVNF 918
           G TYRS++NF
Sbjct: 265 GKTYRSVINF 274


Top