BLASTX nr result

ID: Coptis24_contig00005727 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00005727
         (251 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003553650.1| PREDICTED: ABC transporter C family member 4...   108   6e-22
ref|XP_002321011.1| multidrug resistance protein ABC transporter...   107   8e-22
ref|XP_002301476.1| multidrug resistance protein ABC transporter...   106   2e-21
ref|XP_003536885.1| PREDICTED: ABC transporter C family member 4...   105   3e-21
dbj|BAF00814.1| ABC transporter-like protein [Arabidopsis thaliana]    99   3e-19

>ref|XP_003553650.1| PREDICTED: ABC transporter C family member 4-like [Glycine max]
          Length = 1504

 Score =  108 bits (269), Expect = 6e-22
 Identities = 48/83 (57%), Positives = 61/83 (73%)
 Frame = -3

Query: 249  AYGWWGIVAVLLMSLLWQISLMAGDYWLAFETGEDRGASFVPSFFFRVYAVLAAVSCVFV 70
            A+GWWGI  VL+ SLLWQ S+MA DYWLA+ET E+R   F PS F  +YA++ AVS + V
Sbjct: 939  AFGWWGITVVLIFSLLWQASMMASDYWLAYETSEERAKMFNPSLFISIYAIITAVSIILV 998

Query: 69   LIRNVVLTYVGLKTAQILCKQIL 1
            +IR+ + T +GLKTAQI   QIL
Sbjct: 999  VIRSYIFTLLGLKTAQIFFTQIL 1021


>ref|XP_002321011.1| multidrug resistance protein ABC transporter family [Populus
            trichocarpa] gi|222861784|gb|EEE99326.1| multidrug
            resistance protein ABC transporter family [Populus
            trichocarpa]
          Length = 1507

 Score =  107 bits (268), Expect = 8e-22
 Identities = 47/76 (61%), Positives = 61/76 (80%)
 Frame = -3

Query: 249  AYGWWGIVAVLLMSLLWQISLMAGDYWLAFETGEDRGASFVPSFFFRVYAVLAAVSCVFV 70
            A+GWWG V  LL+SL+WQ SLMAGDYWLAFET ++R A+F PS F  VY ++AAVS VF+
Sbjct: 942  AFGWWGAVVALLLSLVWQASLMAGDYWLAFETADERAATFKPSLFISVYGIIAAVSVVFL 1001

Query: 69   LIRNVVLTYVGLKTAQ 22
            ++R++  T +GLKTAQ
Sbjct: 1002 IMRSLFFTLMGLKTAQ 1017


>ref|XP_002301476.1| multidrug resistance protein ABC transporter family [Populus
            trichocarpa] gi|222843202|gb|EEE80749.1| multidrug
            resistance protein ABC transporter family [Populus
            trichocarpa]
          Length = 1508

 Score =  106 bits (264), Expect = 2e-21
 Identities = 49/83 (59%), Positives = 63/83 (75%)
 Frame = -3

Query: 249  AYGWWGIVAVLLMSLLWQISLMAGDYWLAFETGEDRGASFVPSFFFRVYAVLAAVSCVFV 70
            A+GWWGIV  +L+SL+WQ S MAGDYWLA+ET E+R A F PS F  VY ++AAVS VF+
Sbjct: 943  AFGWWGIVVAMLLSLVWQASQMAGDYWLAYETAEERAAMFKPSLFISVYGIIAAVSVVFL 1002

Query: 69   LIRNVVLTYVGLKTAQILCKQIL 1
             +R++ +T +GLKTAQ L   IL
Sbjct: 1003 AMRSLFVTLMGLKTAQKLFGGIL 1025


>ref|XP_003536885.1| PREDICTED: ABC transporter C family member 4-like [Glycine max]
          Length = 1501

 Score =  105 bits (263), Expect = 3e-21
 Identities = 46/83 (55%), Positives = 63/83 (75%)
 Frame = -3

Query: 249  AYGWWGIVAVLLMSLLWQISLMAGDYWLAFETGEDRGASFVPSFFFRVYAVLAAVSCVFV 70
            A+GWWGI+AV+ +S+LWQ S+MA DYWLA+ET E+R   F PS F  +YA++A VS V +
Sbjct: 936  AFGWWGIIAVISLSVLWQASMMASDYWLAYETSEERAQLFNPSMFISIYAIIAVVSVVLI 995

Query: 69   LIRNVVLTYVGLKTAQILCKQIL 1
            ++R+  +T +GLKTAQI   QIL
Sbjct: 996  VLRSYSVTVLGLKTAQIFFSQIL 1018


>dbj|BAF00814.1| ABC transporter-like protein [Arabidopsis thaliana]
          Length = 940

 Score = 99.4 bits (246), Expect = 3e-19
 Identities = 46/83 (55%), Positives = 58/83 (69%)
 Frame = -3

Query: 249 AYGWWGIVAVLLMSLLWQISLMAGDYWLAFETGEDRGASFVPSFFFRVYAVLAAVSCVFV 70
           AYGWWG++ V+  S+ WQ SLMA DYWLA+ET      SF  + F RVY ++AAVS V V
Sbjct: 375 AYGWWGMILVVFFSVAWQASLMASDYWLAYETSAKNEVSFDATVFIRVYVIIAAVSIVLV 434

Query: 69  LIRNVVLTYVGLKTAQILCKQIL 1
            +R   +T++GLKTAQI  KQIL
Sbjct: 435 CLRAFYVTHLGLKTAQIFFKQIL 457


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