BLASTX nr result

ID: Coptis24_contig00005726 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00005726
         (224 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003553650.1| PREDICTED: ABC transporter C family member 4...    94   1e-17
ref|XP_003536885.1| PREDICTED: ABC transporter C family member 4...    93   3e-17
ref|XP_002301476.1| multidrug resistance protein ABC transporter...    92   4e-17
ref|NP_191829.1| ABC transporter C family member 14 [Arabidopsis...    91   8e-17
ref|XP_002878472.1| ATMRP10 [Arabidopsis lyrata subsp. lyrata] g...    91   1e-16

>ref|XP_003553650.1| PREDICTED: ABC transporter C family member 4-like [Glycine max]
          Length = 1504

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 45/74 (60%), Positives = 56/74 (75%)
 Frame = -3

Query: 222  LAFETGEDQGASFDPSFFFRVYVILAAVSCVFVLIRNVVLTYVGLKTAQILCKQILHSIL 43
            LA+ET E++   F+PS F  +Y I+ AVS + V+IR+ + T +GLKTAQI   QIL SIL
Sbjct: 966  LAYETSEERAKMFNPSLFISIYAIITAVSIILVVIRSYIFTLLGLKTAQIFFTQILRSIL 1025

Query: 42   RAPMSFFDTTPSGR 1
            RAPMSFFDTTPSGR
Sbjct: 1026 RAPMSFFDTTPSGR 1039


>ref|XP_003536885.1| PREDICTED: ABC transporter C family member 4-like [Glycine max]
          Length = 1501

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 44/74 (59%), Positives = 56/74 (75%)
 Frame = -3

Query: 222  LAFETGEDQGASFDPSFFFRVYVILAAVSCVFVLIRNVVLTYVGLKTAQILCKQILHSIL 43
            LA+ET E++   F+PS F  +Y I+A VS V +++R+  +T +GLKTAQI   QILHSIL
Sbjct: 963  LAYETSEERAQLFNPSMFISIYAIIAVVSVVLIVLRSYSVTVLGLKTAQIFFSQILHSIL 1022

Query: 42   RAPMSFFDTTPSGR 1
             APMSFFDTTPSGR
Sbjct: 1023 HAPMSFFDTTPSGR 1036


>ref|XP_002301476.1| multidrug resistance protein ABC transporter family [Populus
            trichocarpa] gi|222843202|gb|EEE80749.1| multidrug
            resistance protein ABC transporter family [Populus
            trichocarpa]
          Length = 1508

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 47/74 (63%), Positives = 57/74 (77%)
 Frame = -3

Query: 222  LAFETGEDQGASFDPSFFFRVYVILAAVSCVFVLIRNVVLTYVGLKTAQILCKQILHSIL 43
            LA+ET E++ A F PS F  VY I+AAVS VF+ +R++ +T +GLKTAQ L   ILHSIL
Sbjct: 970  LAYETAEERAAMFKPSLFISVYGIIAAVSVVFLAMRSLFVTLMGLKTAQKLFGGILHSIL 1029

Query: 42   RAPMSFFDTTPSGR 1
             APMSFFDTTPSGR
Sbjct: 1030 HAPMSFFDTTPSGR 1043


>ref|NP_191829.1| ABC transporter C family member 14 [Arabidopsis thaliana]
            gi|75335712|sp|Q9LZJ5.1|AB14C_ARATH RecName: Full=ABC
            transporter C family member 14; Short=ABC transporter
            ABCC.14; Short=AtABCC14; AltName: Full=ATP-energized
            glutathione S-conjugate pump 10; AltName:
            Full=Glutathione S-conjugate-transporting ATPase 10;
            AltName: Full=Multidrug resistance-associated protein 10
            gi|7362750|emb|CAB83120.1| ABC transporter-like protein
            [Arabidopsis thaliana] gi|332646860|gb|AEE80381.1| ABC
            transporter C family member 14 [Arabidopsis thaliana]
          Length = 1539

 Score = 91.3 bits (225), Expect = 8e-17
 Identities = 46/74 (62%), Positives = 56/74 (75%)
 Frame = -3

Query: 222  LAFETGEDQGASFDPSFFFRVYVILAAVSCVFVLIRNVVLTYVGLKTAQILCKQILHSIL 43
            LA+ET      SFD + F RVYVI+AAVS V V +R   +T++GLKTAQI  KQIL+S++
Sbjct: 1001 LAYETSAKNEVSFDATVFIRVYVIIAAVSIVLVCLRAFYVTHLGLKTAQIFFKQILNSLV 1060

Query: 42   RAPMSFFDTTPSGR 1
             APMSFFDTTPSGR
Sbjct: 1061 HAPMSFFDTTPSGR 1074


>ref|XP_002878472.1| ATMRP10 [Arabidopsis lyrata subsp. lyrata]
            gi|297324310|gb|EFH54731.1| ATMRP10 [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1546

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 45/74 (60%), Positives = 56/74 (75%)
 Frame = -3

Query: 222  LAFETGEDQGASFDPSFFFRVYVILAAVSCVFVLIRNVVLTYVGLKTAQILCKQILHSIL 43
            LA+ET      SFD + F RVY+I+AAVS V V +R   +T++GLKTAQI  KQIL+S++
Sbjct: 1008 LAYETSAKNEVSFDATVFIRVYIIIAAVSIVLVCLRAFYVTHLGLKTAQIFFKQILNSLV 1067

Query: 42   RAPMSFFDTTPSGR 1
             APMSFFDTTPSGR
Sbjct: 1068 HAPMSFFDTTPSGR 1081


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