BLASTX nr result

ID: Coptis24_contig00005693 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00005693
         (2410 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270102.1| PREDICTED: uncharacterized protein LOC100266...   146   3e-32
emb|CBI34075.3| unnamed protein product [Vitis vinifera]              142   4e-31
gb|ABK25440.1| unknown [Picea sitchensis]                              96   3e-17
ref|XP_002270340.2| PREDICTED: uncharacterized protein LOC100232...    86   4e-14
ref|XP_003636168.1| Heterogeneous nuclear ribonucleoprotein Q [M...    80   2e-12

>ref|XP_002270102.1| PREDICTED: uncharacterized protein LOC100266805 [Vitis vinifera]
          Length = 719

 Score =  146 bits (368), Expect = 3e-32
 Identities = 81/162 (50%), Positives = 107/162 (66%), Gaps = 3/162 (1%)
 Frame = +2

Query: 68  EKRWSYRDAYPSRESEYLDSPQXXXXXXXXXXXXXXXXEESYGRHMERPSSYRGSQSHDY 247
           E+R+ Y+D Y SR SEYLDSP                 ++ Y R++ERP++Y     HDY
Sbjct: 510 ERRY-YKDNYSSRGSEYLDSPPRNVSRAAGHRAPLYE-DDDYDRYLERPTNYHDGHRHDY 567

Query: 248 GSVGS-KRSHASMEEYQSRFPESTVRQSRARFDYGVSNDDMPYNDRAYGSESTS-ARVGR 421
           GS+ S KRSH++MEE  SR+ E  +R SRARFDYG SN  +PY+D  YGSESTS  R+GR
Sbjct: 568 GSISSSKRSHSAMEEVHSRYAEPPIRHSRARFDYGGSNSGLPYDDH-YGSESTSERRMGR 626

Query: 422 GTHLGYERGSRSSAGHSQGVYDTHTS-SAYSRDEGRRADMGG 544
           G+ LGY+ G RSS+GHS+G+Y+T TS + Y RD+  R +  G
Sbjct: 627 GSRLGYDGGMRSSSGHSRGMYETRTSTTGYRRDDISRGNEEG 668


>emb|CBI34075.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  142 bits (358), Expect = 4e-31
 Identities = 76/147 (51%), Positives = 100/147 (68%), Gaps = 2/147 (1%)
 Frame = +2

Query: 68   EKRWSYRDAYPSRESEYLDSPQXXXXXXXXXXXXXXXXEESYGRHMERPSSYRGSQSHDY 247
            E+R+ Y+D Y SR SEYLDSP                 ++ Y R++ERP++Y     HDY
Sbjct: 571  ERRY-YKDNYSSRGSEYLDSPPRNVSRAAGHRAPLYE-DDDYDRYLERPTNYHDGHRHDY 628

Query: 248  GSVGS-KRSHASMEEYQSRFPESTVRQSRARFDYGVSNDDMPYNDRAYGSESTS-ARVGR 421
            GS+ S KRSH++MEE  SR+ E  +R SRARFDYG SN  +PY+D  YGSESTS  R+GR
Sbjct: 629  GSISSSKRSHSAMEEVHSRYAEPPIRHSRARFDYGGSNSGLPYDDH-YGSESTSERRMGR 687

Query: 422  GTHLGYERGSRSSAGHSQGVYDTHTSS 502
            G+ LGY+ G RSS+GHS+G+Y+T TS+
Sbjct: 688  GSRLGYDGGMRSSSGHSRGMYETRTST 714


>gb|ABK25440.1| unknown [Picea sitchensis]
          Length = 376

 Score = 96.3 bits (238), Expect = 3e-17
 Identities = 69/177 (38%), Positives = 91/177 (51%), Gaps = 3/177 (1%)
 Frame = +2

Query: 26  SKTRSSDFVTKGANEKRWSYRDAYPSRESEYLDSPQXXXXXXXXXXXXXXXXEESYGRHM 205
           S   + DF T+ A  +R SYRD+Y +R S                       EESYGR +
Sbjct: 162 SSRSAPDFSTRAAAARRSSYRDSYANRGSGSYSDNAPPRGVSRTVSRRPPYPEESYGRRI 221

Query: 206 ERPSSYRGSQSHDYGSV-GSKRSHASMEEYQSRFPESTVRQSRARFDYGVSNDDMPYNDR 382
           ++P  YR S+  DY SV GSKR ++++EE   R+ E  +R SRAR DYGVS     Y D 
Sbjct: 222 DKP--YRDSRGRDYDSVSGSKRPYSAVEE-PPRYGEPAMRNSRARLDYGVSASASQYGD- 277

Query: 383 AYGSESTSARVGRGTHLGYERGSRSSAGHSQGVYDTHTSSAYSRDEGRR--ADMGGA 547
            YG    S R+GRG+ LGY  G  S+   S G+YD H S   S   G +    +GG+
Sbjct: 278 -YGE---SVRLGRGSQLGY--GGSSARQDSYGLYDGHQSRVGSGYGGSKTYGSLGGS 328


>ref|XP_002270340.2| PREDICTED: uncharacterized protein LOC100232913 [Vitis vinifera]
            gi|297734640|emb|CBI16691.3| unnamed protein product
            [Vitis vinifera]
          Length = 812

 Score = 86.3 bits (212), Expect = 4e-14
 Identities = 63/172 (36%), Positives = 93/172 (54%), Gaps = 5/172 (2%)
 Frame = +2

Query: 44   DFVTKGANEKRWSYRDAYPSRESEYLDSPQXXXXXXXXXXXXXXXXEESYGRHMERPS-- 217
            D+ ++ A E+R SYRD Y +R S Y D P+                +++YG+  ERP   
Sbjct: 607  DYGSRVAPERRPSYRDDYATRGSGYSDIPRNTSRTAARRTYE----DDAYGQRFERPPPP 662

Query: 218  SYRGSQSHDYGSV-GSKRSHASMEEYQSRFPESTVRQSRARFDYGVSNDDMPYNDRAYGS 394
            SYR  +  DY S+ GSKR + ++++   R+ +++VRQSRAR DY +S     Y D AYG 
Sbjct: 663  SYREGRPRDYDSIAGSKRPYGALDDVPPRYADASVRQSRARLDYEMSAGASQYGD-AYGD 721

Query: 395  ESTSARVGRGTHLGYERGSRS--SAGHSQGVYDTHTSSAYSRDEGRRADMGG 544
                 R+GR ++LGY  GSRS  S+  S G+Y +     Y       +D+GG
Sbjct: 722  -----RLGR-SNLGY-GGSRSSMSSQDSHGLYSSRQGMGYGGGSFGGSDVGG 766


>ref|XP_003636168.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
            gi|355502103|gb|AES83306.1| Heterogeneous nuclear
            ribonucleoprotein Q [Medicago truncatula]
          Length = 824

 Score = 80.5 bits (197), Expect = 2e-12
 Identities = 60/170 (35%), Positives = 85/170 (50%), Gaps = 11/170 (6%)
 Frame = +2

Query: 44   DFVTKGANEKRWSYRDAYPSRESEYLDSPQXXXXXXXXXXXXXXXXEESYGRHMERPS-- 217
            D+ ++  +E+R +YRD YP R S+Y D P+                ++ Y +  ERP   
Sbjct: 588  DYGSRMTSERRPTYRD-YPPRGSDYSDPPRSTARAAPRRGYV----DDGYSQRYERPPPP 642

Query: 218  ------SYRGSQSHDYGSV-GSKRSHASMEEYQSRFPESTVRQSRARFDYGVSNDDMPYN 376
                  SYR  +  DY S+ GSKRS+A++++   R+ ++  RQSRAR +Y        Y 
Sbjct: 643  PPPSHPSYREGRPRDYDSLSGSKRSYAAVDDVPPRYADTGARQSRARLEYDYGGSASQYG 702

Query: 377  DRAYGSESTSARVGRGTHLGYERGSRSSAG--HSQGVYDTHTSSAYSRDE 520
            D AYG      RVGR + LGY  GSRSS     S GVY +    +Y   E
Sbjct: 703  D-AYGD-----RVGRSS-LGYGSGSRSSISGQDSHGVYSSRQGMSYGGGE 745


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