BLASTX nr result
ID: Coptis24_contig00005691
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00005691
(600 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containi... 127 1e-27
emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera] 127 1e-27
emb|CBI24272.3| unnamed protein product [Vitis vinifera] 111 1e-22
sp|Q5YLB4.1|GYRB_NICBE RecName: Full=DNA gyrase subunit B, chlor... 96 4e-18
emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera] 96 6e-18
>ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Vitis vinifera]
Length = 972
Score = 127 bits (320), Expect = 1e-27
Identities = 63/92 (68%), Positives = 77/92 (83%)
Frame = +1
Query: 160 ITMYSGCDHMEWACSVFNVLSDKDVVVWNSIISACAQHGQGVSALNFLRGMLVSDIEPNK 339
I+MYSGCD +E ACSVF+ LS +DVVVWNSIISACAQ G+ V+AL+ LR M +S++E N
Sbjct: 541 ISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNT 600
Query: 340 VTVVSVLPACARLAALQQGKEIHQFNIRRGFD 435
VT+VS LPAC++LAAL+QGKEIHQF IR G D
Sbjct: 601 VTMVSALPACSKLAALRQGKEIHQFIIRCGLD 632
Score = 58.5 bits (140), Expect = 9e-07
Identities = 24/82 (29%), Positives = 46/82 (56%)
Frame = +1
Query: 151 NGKITMYSGCDHMEWACSVFNVLSDKDVVVWNSIISACAQHGQGVSALNFLRGMLVSDIE 330
N I MY C ++ + +F+++ +D+V WN +IS HG G+ A+N + ++
Sbjct: 639 NSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLK 698
Query: 331 PNKVTVVSVLPACARLAALQQG 396
PN +T ++L AC+ +++G
Sbjct: 699 PNHITFTNLLSACSHSGLIEEG 720
Score = 57.8 bits (138), Expect = 1e-06
Identities = 23/76 (30%), Positives = 43/76 (56%)
Frame = +1
Query: 223 DKDVVVWNSIISACAQHGQGVSALNFLRGMLVSDIEPNKVTVVSVLPACARLAALQQGKE 402
+ D++ WN +++ Q+G G +AL F + M ++PN T+ L AC ++ L+ GKE
Sbjct: 461 EPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKE 520
Query: 403 IHQFNIRRGFDMHIAI 450
IH + +R ++ +
Sbjct: 521 IHGYVLRNHIELSTGV 536
Score = 55.8 bits (133), Expect = 6e-06
Identities = 23/65 (35%), Positives = 41/65 (63%)
Frame = +1
Query: 229 DVVVWNSIISACAQHGQGVSALNFLRGMLVSDIEPNKVTVVSVLPACARLAALQQGKEIH 408
+VV W ++I+ Q+G AL+ R M++ ++PN +T+ S + AC L+ L+ G+EIH
Sbjct: 326 NVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIH 385
Query: 409 QFNIR 423
+ I+
Sbjct: 386 GYCIK 390
>emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
Length = 929
Score = 127 bits (320), Expect = 1e-27
Identities = 63/92 (68%), Positives = 77/92 (83%)
Frame = +1
Query: 160 ITMYSGCDHMEWACSVFNVLSDKDVVVWNSIISACAQHGQGVSALNFLRGMLVSDIEPNK 339
I+MYSGCD +E ACSVF+ LS +DVVVWNSIISACAQ G+ V+AL+ LR M +S++E N
Sbjct: 541 ISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNT 600
Query: 340 VTVVSVLPACARLAALQQGKEIHQFNIRRGFD 435
VT+VS LPAC++LAAL+QGKEIHQF IR G D
Sbjct: 601 VTMVSALPACSKLAALRQGKEIHQFIIRCGLD 632
Score = 58.9 bits (141), Expect = 7e-07
Identities = 24/82 (29%), Positives = 46/82 (56%)
Frame = +1
Query: 151 NGKITMYSGCDHMEWACSVFNVLSDKDVVVWNSIISACAQHGQGVSALNFLRGMLVSDIE 330
N I MY C ++ + +F+++ +D+V WN +IS HG G+ A+N + ++
Sbjct: 639 NSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLK 698
Query: 331 PNKVTVVSVLPACARLAALQQG 396
PN +T ++L AC+ +++G
Sbjct: 699 PNHITFTNLLSACSHSGLIEEG 720
Score = 57.8 bits (138), Expect = 1e-06
Identities = 23/76 (30%), Positives = 43/76 (56%)
Frame = +1
Query: 223 DKDVVVWNSIISACAQHGQGVSALNFLRGMLVSDIEPNKVTVVSVLPACARLAALQQGKE 402
+ D++ WN +++ Q+G G +AL F + M ++PN T+ L AC ++ L+ GKE
Sbjct: 461 EPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKE 520
Query: 403 IHQFNIRRGFDMHIAI 450
IH + +R ++ +
Sbjct: 521 IHGYVLRNHIELSTGV 536
Score = 55.8 bits (133), Expect = 6e-06
Identities = 23/65 (35%), Positives = 41/65 (63%)
Frame = +1
Query: 229 DVVVWNSIISACAQHGQGVSALNFLRGMLVSDIEPNKVTVVSVLPACARLAALQQGKEIH 408
+VV W ++I+ Q+G AL+ R M++ ++PN +T+ S + AC L+ L+ G+EIH
Sbjct: 326 NVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIH 385
Query: 409 QFNIR 423
+ I+
Sbjct: 386 GYCIK 390
>emb|CBI24272.3| unnamed protein product [Vitis vinifera]
Length = 729
Score = 111 bits (277), Expect = 1e-22
Identities = 56/83 (67%), Positives = 68/83 (81%)
Frame = +1
Query: 187 MEWACSVFNVLSDKDVVVWNSIISACAQHGQGVSALNFLRGMLVSDIEPNKVTVVSVLPA 366
M ACSVF+ LS +DVVVWNSIISACAQ G+ V+AL+ LR M +S++E N VT+VS LPA
Sbjct: 307 MHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPA 366
Query: 367 CARLAALQQGKEIHQFNIRRGFD 435
C++LAAL+QGKEIHQF IR G D
Sbjct: 367 CSKLAALRQGKEIHQFIIRCGLD 389
Score = 67.0 bits (162), Expect = 2e-09
Identities = 30/88 (34%), Positives = 50/88 (56%)
Frame = +1
Query: 160 ITMYSGCDHMEWACSVFNVLSDKDVVVWNSIISACAQHGQGVSALNFLRGMLVSDIEPNK 339
+ M+ C M+ A F + KDV +WN ++S G+ ALN R M++ ++PN
Sbjct: 153 LDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNS 212
Query: 340 VTVVSVLPACARLAALQQGKEIHQFNIR 423
+T+ S + AC L+ L+ G+EIH + I+
Sbjct: 213 ITIASAVSACTNLSLLRHGREIHGYCIK 240
Score = 58.5 bits (140), Expect = 9e-07
Identities = 24/82 (29%), Positives = 46/82 (56%)
Frame = +1
Query: 151 NGKITMYSGCDHMEWACSVFNVLSDKDVVVWNSIISACAQHGQGVSALNFLRGMLVSDIE 330
N I MY C ++ + +F+++ +D+V WN +IS HG G+ A+N + ++
Sbjct: 396 NSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLK 455
Query: 331 PNKVTVVSVLPACARLAALQQG 396
PN +T ++L AC+ +++G
Sbjct: 456 PNHITFTNLLSACSHSGLIEEG 477
>sp|Q5YLB4.1|GYRB_NICBE RecName: Full=DNA gyrase subunit B, chloroplastic/mitochondrial;
Flags: Precursor gi|38017095|gb|AAR07943.1| DNA gyrase B
subunit [Nicotiana benthamiana]
Length = 731
Score = 96.3 bits (238), Expect = 4e-18
Identities = 40/51 (78%), Positives = 48/51 (94%)
Frame = +3
Query: 3 DPEKMQHNEYYYAGGLLEYVKWLNSDKKPIHDTVGFRKEVEGITIDLALQW 155
DPEK+Q NEY+YAGGL+EYVKWLN+DKKP+HD +GFRKE +GITID+ALQW
Sbjct: 301 DPEKIQCNEYFYAGGLVEYVKWLNADKKPLHDVLGFRKEADGITIDMALQW 351
>emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]
Length = 822
Score = 95.5 bits (236), Expect = 6e-18
Identities = 49/105 (46%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Frame = +1
Query: 145 LSNGKITMYSGCDHMEWACSVFNVLSDKDVVVWNSIISACAQHGQGVSALNFLRGMLVSD 324
+ N ITMYS C ++ A +F ++ K ++ WNSIIS C + A LR ML+S
Sbjct: 448 VKNSLITMYSRCKDLKHAYLLFQLMEAKSLISWNSIISGCCHMDRSEEASFLLREMLLSG 507
Query: 325 IEPNKVTVVSVLPACARLAALQQGKEIHQFNIRR-GFDMHIAIWN 456
IEPN VT+ SVLP CAR+A LQ GKE H + RR F H+ +WN
Sbjct: 508 IEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWN 552