BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00005679
         (1597 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276984.1| PREDICTED: translation initiation factor IF-...   273   9e-71
ref|XP_002533227.1| translation initiation factor if-3, putative...   267   7e-69
ref|XP_002325123.1| predicted protein [Populus trichocarpa] gi|2...   264   6e-68
ref|XP_004144726.1| PREDICTED: translation initiation factor IF-...   260   8e-67
ref|XP_004163986.1| PREDICTED: LOW QUALITY PROTEIN: translation ...   258   4e-66

>ref|XP_002276984.1| PREDICTED: translation initiation factor IF-3 [Vitis vinifera]
            gi|297743667|emb|CBI36550.3| unnamed protein product
            [Vitis vinifera]
          Length = 272

 Score =  273 bits (698), Expect = 9e-71
 Identities = 142/210 (67%), Positives = 168/210 (80%)
 Frame = -3

Query: 1019 ITARYGRPSFNRSRDSSRKRNEPAEADPAVDVSTIRSPSVRLIDAQQNMVGVVSKGEAIR 840
            +TARYG   +  S D+ R R   ++ D A+DVS+IRS SVRLID QQNMVGVVSK +AI+
Sbjct: 56   VTARYG--GYRSSGDAWRSRQRDSDDDQALDVSSIRSASVRLIDEQQNMVGVVSKSQAIQ 113

Query: 839  MAEEAELDLVILSPDADPPVVKIMDYNXXXXXXXXXXXXXXXKSSASRMDMKELKMGYNI 660
            MAE+AELDLV+LSPDADPPVV+IMDYN               KS+A+RMD+KELKMGYNI
Sbjct: 114  MAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAANRMDLKELKMGYNI 173

Query: 659  DVHDYTVRLKAAQKFLNDGDKVKVIVQLKGRENEFRNIAIELIKRFQNDIGELGTEEAKN 480
            D HDY+VRLKAA+KFL DGDKVK+IV LKGRENEFRNIAIELI+RFQND+GEL TEE+KN
Sbjct: 174  DSHDYSVRLKAARKFLQDGDKVKIIVNLKGRENEFRNIAIELIRRFQNDVGELATEESKN 233

Query: 479  FRERNIFLVLLPNKAIQQRIQEQPKRKEKS 390
            F  RNIF+VL+PNKA+ Q+ QE  K+ EKS
Sbjct: 234  FSVRNIFIVLVPNKALLQKGQESSKKTEKS 263


>ref|XP_002533227.1| translation initiation factor if-3, putative [Ricinus communis]
           gi|223526947|gb|EEF29148.1| translation initiation
           factor if-3, putative [Ricinus communis]
          Length = 274

 Score =  267 bits (682), Expect = 7e-69
 Identities = 138/199 (69%), Positives = 157/199 (78%)
 Frame = -3

Query: 986 RSRDSSRKRNEPAEADPAVDVSTIRSPSVRLIDAQQNMVGVVSKGEAIRMAEEAELDLVI 807
           RS    R R   +E D A+D+STIRS +VRLID QQNMVGVV K EAI+MAE A LDLVI
Sbjct: 67  RSSGDRRSRQSDSEDDHALDISTIRSATVRLIDEQQNMVGVVPKSEAIQMAENAALDLVI 126

Query: 806 LSPDADPPVVKIMDYNXXXXXXXXXXXXXXXKSSASRMDMKELKMGYNIDVHDYTVRLKA 627
           LSPDADPPVV+IMDYN               KS+A+RMD+KELKMGYNID HDY VRL+A
Sbjct: 127 LSPDADPPVVRIMDYNKYRYELQKKKKGQQKKSAATRMDLKELKMGYNIDQHDYDVRLRA 186

Query: 626 AQKFLNDGDKVKVIVQLKGRENEFRNIAIELIKRFQNDIGELGTEEAKNFRERNIFLVLL 447
           A+KFL DGDKVKVIV LKGRENEFRNIAIELI+RFQND+GEL TEE KNFR+RNIF+ L 
Sbjct: 187 ARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELATEETKNFRDRNIFITLA 246

Query: 446 PNKAIQQRIQEQPKRKEKS 390
           PNKAI Q+ QE PK+++KS
Sbjct: 247 PNKAILQKSQEPPKKRDKS 265


>ref|XP_002325123.1| predicted protein [Populus trichocarpa] gi|222866557|gb|EEF03688.1|
            predicted protein [Populus trichocarpa]
          Length = 278

 Score =  264 bits (674), Expect = 6e-68
 Identities = 136/209 (65%), Positives = 166/209 (79%)
 Frame = -3

Query: 1016 TARYGRPSFNRSRDSSRKRNEPAEADPAVDVSTIRSPSVRLIDAQQNMVGVVSKGEAIRM 837
            TAR+G P   RS DS R R   ++ D A+++S+IRS +VRLID QQNMVGVV+  +AI+M
Sbjct: 64   TARFGGP---RSYDSRRPRKSDSDDDQALNISSIRSATVRLIDQQQNMVGVVTVRDAIQM 120

Query: 836  AEEAELDLVILSPDADPPVVKIMDYNXXXXXXXXXXXXXXXKSSASRMDMKELKMGYNID 657
            AE+ EL+LVI+SPDADPPVV+IMDYN               KS+ASRMD+KELKMGYNID
Sbjct: 121  AEDTELNLVIVSPDADPPVVRIMDYNKFRYEQQKKKRGQQKKSAASRMDLKELKMGYNID 180

Query: 656  VHDYTVRLKAAQKFLNDGDKVKVIVQLKGRENEFRNIAIELIKRFQNDIGELGTEEAKNF 477
             HDY VRL+AA+KFL DGDKVKVIV LKGRENEFRN AIEL++RFQND+GEL TEE+KNF
Sbjct: 181  QHDYDVRLRAARKFLKDGDKVKVIVNLKGRENEFRNNAIELLRRFQNDVGELATEESKNF 240

Query: 476  RERNIFLVLLPNKAIQQRIQEQPKRKEKS 390
            R+RN F+ L+PNKA+ Q+ QE PK+K+KS
Sbjct: 241  RDRNAFITLVPNKALLQKAQEPPKKKDKS 269


>ref|XP_004144726.1| PREDICTED: translation initiation factor IF-3-like [Cucumis sativus]
          Length = 299

 Score =  260 bits (664), Expect = 8e-67
 Identities = 134/204 (65%), Positives = 162/204 (79%)
 Frame = -3

Query: 1004 GRPSFNRSRDSSRKRNEPAEADPAVDVSTIRSPSVRLIDAQQNMVGVVSKGEAIRMAEEA 825
            G P  +   DS R  +E       +D+S I+S +VRLIDA+QNMVGVVSK +AI+MAE+A
Sbjct: 91   GAPRSSGPPDSKRSNDEIG-----LDISAIKSINVRLIDAEQNMVGVVSKAQAIQMAEDA 145

Query: 824  ELDLVILSPDADPPVVKIMDYNXXXXXXXXXXXXXXXKSSASRMDMKELKMGYNIDVHDY 645
            ELDLV++SPDADPPVV+IMDYN               KS+A+RMD+KELKMGYNID HDY
Sbjct: 146  ELDLVVVSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNIDQHDY 205

Query: 644  TVRLKAAQKFLNDGDKVKVIVQLKGRENEFRNIAIELIKRFQNDIGELGTEEAKNFRERN 465
            +VRLKAA+KFL DGDKVKVIV LKGRENEFRNIAIELI+RFQ ++GEL TEEAKNFR+RN
Sbjct: 206  SVRLKAAKKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRN 265

Query: 464  IFLVLLPNKAIQQRIQEQPKRKEK 393
            IF+VL+PNKA+ Q+ QE PK+K+K
Sbjct: 266  IFIVLVPNKAVLQKAQEPPKKKDK 289


>ref|XP_004163986.1| PREDICTED: LOW QUALITY PROTEIN: translation initiation factor
            IF-3-like [Cucumis sativus]
          Length = 299

 Score =  258 bits (658), Expect = 4e-66
 Identities = 133/204 (65%), Positives = 161/204 (78%)
 Frame = -3

Query: 1004 GRPSFNRSRDSSRKRNEPAEADPAVDVSTIRSPSVRLIDAQQNMVGVVSKGEAIRMAEEA 825
            G P  +   DS R  +E       +D+S I+S +VRLIDA+QNMVGVVSK +AI+MAE+A
Sbjct: 91   GAPRSSGPPDSKRSNDEIG-----LDISAIKSINVRLIDAEQNMVGVVSKAQAIQMAEDA 145

Query: 824  ELDLVILSPDADPPVVKIMDYNXXXXXXXXXXXXXXXKSSASRMDMKELKMGYNIDVHDY 645
            ELDLV++SPDADPPVV+IMDYN               KS+A+RMD+KELKMGYNID HDY
Sbjct: 146  ELDLVVVSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNIDQHDY 205

Query: 644  TVRLKAAQKFLNDGDKVKVIVQLKGRENEFRNIAIELIKRFQNDIGELGTEEAKNFRERN 465
            +VRLKAA+KFL DGDKVKVIV LKGRENEFRNIAIELI+RFQ ++GEL TEEAKNFR+RN
Sbjct: 206  SVRLKAAKKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRN 265

Query: 464  IFLVLLPNKAIQQRIQEQPKRKEK 393
            IF+VL+PNKA+ Q+ QE PK+ +K
Sbjct: 266  IFIVLVPNKAVLQKAQEPPKKXDK 289