BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00005657
         (4358 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263835.2| PREDICTED: DNA-directed RNA polymerase I sub...  1435   0.0  
emb|CBI35100.3| unnamed protein product [Vitis vinifera]             1404   0.0  
ref|XP_002529996.1| DNA-directed RNA polymerase I subunit, putat...  1378   0.0  
ref|XP_004146776.1| PREDICTED: DNA-directed RNA polymerase I sub...  1378   0.0  
ref|XP_003542805.1| PREDICTED: DNA-directed RNA polymerase I sub...  1367   0.0  

>ref|XP_002263835.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Vitis
            vinifera]
          Length = 1142

 Score = 1435 bits (3714), Expect = 0.0
 Identities = 711/974 (72%), Positives = 823/974 (84%), Gaps = 3/974 (0%)
 Frame = -3

Query: 3492 LYYLQSGSARLGFWVKGREFLLPIGLVLKALIDTNDHEIYASLTCCYSDIYQKGERSVGT 3313
            LYYL++GSARLGFW++GRE+LLP+G+VLKALIDT DHEIY SLTCCYS+ Y+ G+ +VGT
Sbjct: 177  LYYLRNGSARLGFWIQGREYLLPVGVVLKALIDTTDHEIYESLTCCYSEKYEGGKGAVGT 236

Query: 3312 QLVGERVKIILDEVQGLSLFTRAQCIQHIGKYFQSVMDGMDDETDSSVGETVLEEYILVH 3133
            QLVGERVKIILDEV+ LSLFTR QC+QHIG++FQ VMDG+++E+ S V + VL EYI VH
Sbjct: 237  QLVGERVKIILDEVRDLSLFTRHQCLQHIGEHFQLVMDGLENESYSIVADAVLREYIFVH 296

Query: 3132 LQSGHDKYNLLIFMLQKLFAFIDHRATEDNTDALQNHEVLQPGHLITIYLKDKLHEWLFK 2953
            L + +DK+NLLIFM+QKLF+ ID  +  DN D LQN EVL PGHLITIYLK+KL EWL+K
Sbjct: 297  LDNNYDKFNLLIFMVQKLFSLIDQTSVPDNPDVLQNQEVLLPGHLITIYLKEKLQEWLYK 356

Query: 2952 ARRLLQDELSKKGQKFEFGSLLDVKKVLDRNPSKSIGTAIESMLKTGRLASQNGLDLQQK 2773
            ARRLLQDE++K+ + FEF SL  VKKV+D+NPS+ I  A+E+MLKTGRL +Q+GLDLQQ+
Sbjct: 357  ARRLLQDEINKR-KNFEFSSLAHVKKVMDKNPSRQISLAVENMLKTGRLVTQSGLDLQQR 415

Query: 2772 GGMTVQAERLNFLRFISHFRSVHRGAAFAGNRNTSVRKLLPEAWGFLCPVHTPDGEPCGL 2593
             GMTVQAERLNFLRF+SHFR+VHRGA+FAG R TSVRKLLPEAWGFLCPVHTPDGEPCGL
Sbjct: 416  AGMTVQAERLNFLRFLSHFRAVHRGASFAGLRTTSVRKLLPEAWGFLCPVHTPDGEPCGL 475

Query: 2592 LNHMASTCRITSYFDSKGNIKDFFKIRLSILSVLIGVGMTPSLPKLVRAGPPEVLSVLLD 2413
            LNHMASTCRITSYFDS+GN +DFFKIR+SILSVLIG+GMTP+LPKLV+AGPPEVLSV+LD
Sbjct: 476  LNHMASTCRITSYFDSRGNTRDFFKIRMSILSVLIGIGMTPALPKLVQAGPPEVLSVILD 535

Query: 2412 GCVIGSISSNMVEKAVAHIRKLKLSANSGIPDDLEVGYVPLSVGGAYPGLYLFSSPSRFV 2233
            G V+GSI S+ VE AV H+R+LK+SA S IPDDLEVGY+PLS+GGAYPGLYLF+SPSRFV
Sbjct: 536  GRVVGSIPSSEVETAVNHLRRLKVSAISVIPDDLEVGYIPLSMGGAYPGLYLFTSPSRFV 595

Query: 2232 RPV--ISLNAEKNHDIELIGPFEQVYMEIRCADGGEGGRTDDNPATHEEMHPTGLLSVVA 2059
            RPV  IS+ +E+ HDIELIGPFEQVYMEIRC DG +GGR +  PATHEE+HPTG+LSVVA
Sbjct: 596  RPVRNISIPSEEGHDIELIGPFEQVYMEIRCPDGSDGGRRNIFPATHEEIHPTGMLSVVA 655

Query: 2058 NLTPYSDHNQSPRNMYQCQMAKQTVGFSSQALQFRADQKLYHLQTPQTPIVRTEAYTKYN 1879
            +LTP+SDHNQSPRNMYQCQM KQT+ FSSQA+  RADQKLYHLQTPQTPIVRT AY KY+
Sbjct: 656  SLTPWSDHNQSPRNMYQCQMGKQTMAFSSQAINCRADQKLYHLQTPQTPIVRTSAYVKYS 715

Query: 1878 IDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMCHTSIYQLETIDLEEQSGKSDHV 1699
            +DEFPTGTNAIVAVLAY+GYDMEDAMILNKSSV+RG+CH  IYQ ETIDL +++ KSD  
Sbjct: 716  MDEFPTGTNAIVAVLAYSGYDMEDAMILNKSSVDRGLCHGQIYQTETIDLSDENNKSDRG 775

Query: 1698 RQIFARSNIDKSVRSSVDSDGLPYVGQVLHPGQPYCSTNNTLSGAIKEHKLKGSEPVTVD 1519
            +++F RSN+DKS  S +DSDGLPYVGQ+++P +PYCS  N ++ + +  KLKGSEPV VD
Sbjct: 776  QRMFRRSNVDKSANSLIDSDGLPYVGQMINPNEPYCSIYNEVTSSTRATKLKGSEPVIVD 835

Query: 1518 YVAVDVKHNP-PQKVXXXXXXXXXXXIGDKFSSRHGQKGVCSQLWPDIDMPFSGTTGMRP 1342
            YVA+D K+   PQKV           IGDKFSSRHGQKGVCSQLWPDIDMPFSG TGMRP
Sbjct: 836  YVALDAKNKKHPQKVNIRFRRPRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRP 895

Query: 1341 DLIINPHAFPSRMTIGMLLESIAAKGGCLNGKFVDATPFPSSSRKENKELPIXXXXXXXX 1162
            DLIINPHAFPSRMTI MLLES+AAKGG L+GKFVDATPF  S RK N E           
Sbjct: 896  DLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFVDATPFSDSLRKANGE---------AG 946

Query: 1161 XXXXSLLDELGPLLTSHGFNSLGSEVLYSGVLGTELVCEIFIGPVYYQRLRHMVSDKFQV 982
                SL+DELG +LTS+GFN  G EVLYSG  GTEL CEIFIGPVYYQRLRHMVSDKFQV
Sbjct: 947  SESSSLVDELGSMLTSYGFNYHGVEVLYSGFYGTELTCEIFIGPVYYQRLRHMVSDKFQV 1006

Query: 981  RNTGAVDPTTRQPMXXXXXXXGIRFGEMERDSLLAHGAAYLLHDRLHTASDFHVADVCSL 802
            R+TG VD  TRQP+       GIRFGEMERDS+LAHGAAYLLHDRLHT SD H+ADVCSL
Sbjct: 1007 RSTGTVDQVTRQPIKGRKRGGGIRFGEMERDSMLAHGAAYLLHDRLHTCSDHHIADVCSL 1066

Query: 801  CGSILTTSFIEPQKKAGQAIAKVTPRGNQRKVTCHACKTSKGMEKVAMPFVFRYLAAELA 622
            CGSILTTS I+PQK+A + I  + P    +KVTCHAC+TSKGME V+MP++FR+LAAELA
Sbjct: 1067 CGSILTTSIIQPQKRAVREIGGLPPGRAPKKVTCHACQTSKGMETVSMPYIFRFLAAELA 1126

Query: 621  AMNVKMTLNLSAGA 580
            AMN+KMTL LS GA
Sbjct: 1127 AMNIKMTLQLSNGA 1140



 Score =  120 bits (301), Expect(2) = 1e-45
 Identities = 60/138 (43%), Positives = 81/138 (58%)
 Frame = -3

Query: 4218 PNCENLEELLKPHVQSFDHFIDIGIETMLENIKPVKITDKFTNTTLEIKFGAHELSAPQK 4039
            P+ E L EL + H+ SFDH ++ G+ET+L ++KP                         +
Sbjct: 6    PDYEPLRELFQHHIDSFDHLVEFGLETLLMSVKP-------------------------R 40

Query: 4038 GHAAIGQRLLPFECRQEKGSYSGKFIVEVCFSYNGRVPLKEKFKFGQLPIMLKSKLCHLR 3859
                +   L PFECRQ K SYSGK + +VCF Y   V ++EKF  GQ PIMLKSKLCHLR
Sbjct: 41   SARTMRDALYPFECRQAKISYSGKLLADVCFQYGNGVAIREKFNLGQFPIMLKSKLCHLR 100

Query: 3858 GANAERLVAYREEPTEMG 3805
            GA+ ++LV+ +EE +EMG
Sbjct: 101  GADPQKLVSCKEESSEMG 118



 Score = 92.8 bits (229), Expect(2) = 1e-45
 Identities = 40/56 (71%), Positives = 53/56 (94%)
 Frame = -2

Query: 3706 GYFIVNGLERLIRFLIMPKRNYPMNVERDSFRERQDGYTNKAVIIRCVRNDQSSVT 3539
            GYFI+NGLER++R LI+PKRNYPM++ R+SFR+R++GYT+KAV+IRCVR DQS+VT
Sbjct: 119  GYFILNGLERVVRLLILPKRNYPMSMVRNSFRDRREGYTDKAVVIRCVREDQSAVT 174


>emb|CBI35100.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score = 1404 bits (3635), Expect = 0.0
 Identities = 702/974 (72%), Positives = 810/974 (83%), Gaps = 3/974 (0%)
 Frame = -3

Query: 3492 LYYLQSGSARLGFWVKGREFLLPIGLVLKALIDTNDHEIYASLTCCYSDIYQKGERSVGT 3313
            LYYL++GSARLGFW++GRE+LLP+G+VLKALIDT DHEIY SLTCCYS+ Y+ G+ +VGT
Sbjct: 170  LYYLRNGSARLGFWIQGREYLLPVGVVLKALIDTTDHEIYESLTCCYSEKYEGGKGAVGT 229

Query: 3312 QLVGERVKIILDEVQGLSLFTRAQCIQHIGKYFQSVMDGMDDETDSSVGETVLEEYILVH 3133
            QLVGERVKIILDEV+ LSLFTR QC+QHIG++FQ VMDG+++E+ S V + VL EYI VH
Sbjct: 230  QLVGERVKIILDEVRDLSLFTRHQCLQHIGEHFQLVMDGLENESYSIVADAVLREYIFVH 289

Query: 3132 LQSGHDKYNLLIFMLQKLFAFIDHRATEDNTDALQNHEVLQPGHLITIYLKDKLHEWLFK 2953
            L + +DK+NLLIFM+QKLF+ ID  +  DN D LQN EVL PGHLITIYLK+KL EWL+K
Sbjct: 290  LDNNYDKFNLLIFMVQKLFSLIDQTSVPDNPDVLQNQEVLLPGHLITIYLKEKLQEWLYK 349

Query: 2952 ARRLLQDELSKKGQKFEFGSLLDVKKVLDRNPSKSIGTAIESMLKTGRLASQNGLDLQQK 2773
            ARRLLQDE++K+ + FEF SL  VKKV+D+NPS+ I  A+E+MLKTGRL +Q+GLDLQQ+
Sbjct: 350  ARRLLQDEINKR-KNFEFSSLAHVKKVMDKNPSRQISLAVENMLKTGRLVTQSGLDLQQR 408

Query: 2772 GGMTVQAERLNFLRFISHFRSVHRGAAFAGNRNTSVRKLLPEAWGFLCPVHTPDGEPCGL 2593
             GMTVQAERLNFLRF+SHFR+VHRGA+FAG R TSVRKLLPEAWGFLCPVHTPDGEPCGL
Sbjct: 409  AGMTVQAERLNFLRFLSHFRAVHRGASFAGLRTTSVRKLLPEAWGFLCPVHTPDGEPCGL 468

Query: 2592 LNHMASTCRITSYFDSKGNIKDFFKIRLSILSVLIGVGMTPSLPKLVRAGPPEVLSVLLD 2413
            LNHMASTCRITSYFDS+GN +DFFKIR+SILSVLIG+GMTP+LPKLV+AGPPEVLSV+LD
Sbjct: 469  LNHMASTCRITSYFDSRGNTRDFFKIRMSILSVLIGIGMTPALPKLVQAGPPEVLSVILD 528

Query: 2412 GCVIGSISSNMVEKAVAHIRKLKLSANSGIPDDLEVGYVPLSVGGAYPGLYLFSSPSRFV 2233
            G V+GSI S+ VE AV H+R+LK+SA S IPDDLEVGY+PLS+GGAYPGLYLF+SPSRFV
Sbjct: 529  GRVVGSIPSSEVETAVNHLRRLKVSAISVIPDDLEVGYIPLSMGGAYPGLYLFTSPSRFV 588

Query: 2232 RPV--ISLNAEKNHDIELIGPFEQVYMEIRCADGGEGGRTDDNPATHEEMHPTGLLSVVA 2059
            RPV  IS+ +E+ HDIELIGPFEQVYMEIRC DG +GGR +  PATHEE+HPTG+LSVVA
Sbjct: 589  RPVRNISIPSEEGHDIELIGPFEQVYMEIRCPDGSDGGRRNIFPATHEEIHPTGMLSVVA 648

Query: 2058 NLTPYSDHNQSPRNMYQCQMAKQTVGFSSQALQFRADQKLYHLQTPQTPIVRTEAYTKYN 1879
            +LTP+SDHNQSPRNMYQCQM KQT+ FSSQA+  RADQKLYHLQTPQTPIVRT AY KY+
Sbjct: 649  SLTPWSDHNQSPRNMYQCQMGKQTMAFSSQAINCRADQKLYHLQTPQTPIVRTSAYVKYS 708

Query: 1878 IDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMCHTSIYQLETIDLEEQSGKSDHV 1699
            +DEFPTGTNAIVAVLAY+GYDMEDAMILNKSSV+RG+CH  IYQ ETIDL +++ KSD  
Sbjct: 709  MDEFPTGTNAIVAVLAYSGYDMEDAMILNKSSVDRGLCHGQIYQTETIDLSDENNKSDRG 768

Query: 1698 RQIFARSNIDKSVRSSVDSDGLPYVGQVLHPGQPYCSTNNTLSGAIKEHKLKGSEPVTVD 1519
            +++F RSN+DKS  S +DSDGLPYVGQ+++P +PYCS  N ++ + +  KLKGSEPV VD
Sbjct: 769  QRMFRRSNVDKSANSLIDSDGLPYVGQMINPNEPYCSIYNEVTSSTRATKLKGSEPVIVD 828

Query: 1518 YVAVDVKHNP-PQKVXXXXXXXXXXXIGDKFSSRHGQKGVCSQLWPDIDMPFSGTTGMRP 1342
            YVA+D K+   PQKV           IGDKFSSRHGQKGVCSQLWPDIDMPFSG TGMRP
Sbjct: 829  YVALDAKNKKHPQKVNIRFRRPRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRP 888

Query: 1341 DLIINPHAFPSRMTIGMLLESIAAKGGCLNGKFVDATPFPSSSRKENKELPIXXXXXXXX 1162
            DLIINPHAFPSRMTI MLLES+AAKGG L+GKFVDATPF  S RK N E           
Sbjct: 889  DLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFVDATPFSDSLRKANGE---------AG 939

Query: 1161 XXXXSLLDELGPLLTSHGFNSLGSEVLYSGVLGTELVCEIFIGPVYYQRLRHMVSDKFQV 982
                SL+DELG +LTS+GFN  G EVLYSG  GTEL CEIFIGPVYYQRLRHMVSDKFQV
Sbjct: 940  SESSSLVDELGSMLTSYGFNYHGVEVLYSGFYGTELTCEIFIGPVYYQRLRHMVSDKFQV 999

Query: 981  RNTGAVDPTTRQPMXXXXXXXGIRFGEMERDSLLAHGAAYLLHDRLHTASDFHVADVCSL 802
            R+TG VD  TRQP+       GIRFGEMERDS+LAHGAAYLLHDRLHT SD H+ADVCSL
Sbjct: 1000 RSTGTVDQVTRQPIKGRKRGGGIRFGEMERDSMLAHGAAYLLHDRLHTCSDHHIADVCSL 1059

Query: 801  CGSILTTSFIEPQKKAGQAIAKVTPRGNQRKVTCHACKTSKGMEKVAMPFVFRYLAAELA 622
            CGSILTTS I+PQK+A                      TSKGME V+MP++FR+LAAELA
Sbjct: 1060 CGSILTTSIIQPQKRA----------------------TSKGMETVSMPYIFRFLAAELA 1097

Query: 621  AMNVKMTLNLSAGA 580
            AMN+KMTL LS GA
Sbjct: 1098 AMNIKMTLQLSNGA 1111



 Score =  107 bits (268), Expect(2) = 7e-42
 Identities = 55/100 (55%), Positives = 68/100 (68%), Gaps = 2/100 (2%)
 Frame = -3

Query: 4098 FTNTTLEIKFGAHELSAPQKGHAAIGQR--LLPFECRQEKGSYSGKFIVEVCFSYNGRVP 3925
            F  T + + FG  EL  PQK  +A   R  L PFECRQ K SYSGK + +VCF Y   V 
Sbjct: 12   FFLTRIALWFGQPELYPPQKERSARTMRDALYPFECRQAKISYSGKLLADVCFQYGNGVA 71

Query: 3924 LKEKFKFGQLPIMLKSKLCHLRGANAERLVAYREEPTEMG 3805
            ++EKF  GQ PIMLKSKLCHLRGA+ ++LV+ +EE +EMG
Sbjct: 72   IREKFNLGQFPIMLKSKLCHLRGADPQKLVSCKEESSEMG 111



 Score = 92.8 bits (229), Expect(2) = 7e-42
 Identities = 40/56 (71%), Positives = 53/56 (94%)
 Frame = -2

Query: 3706 GYFIVNGLERLIRFLIMPKRNYPMNVERDSFRERQDGYTNKAVIIRCVRNDQSSVT 3539
            GYFI+NGLER++R LI+PKRNYPM++ R+SFR+R++GYT+KAV+IRCVR DQS+VT
Sbjct: 112  GYFILNGLERVVRLLILPKRNYPMSMVRNSFRDRREGYTDKAVVIRCVREDQSAVT 167


>ref|XP_002529996.1| DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
            gi|223530519|gb|EEF32401.1| DNA-directed RNA polymerase I
            subunit, putative [Ricinus communis]
          Length = 1159

 Score = 1378 bits (3567), Expect = 0.0
 Identities = 682/974 (70%), Positives = 801/974 (82%), Gaps = 3/974 (0%)
 Frame = -3

Query: 3492 LYYLQSGSARLGFWVKGREFLLPIGLVLKALIDTNDHEIYASLTCCYSDIYQKGERSVGT 3313
            LYYL+SGSARLGFW++GRE+LLP G+VLKAL +T D EIY  LTCCY + Y+K + +VG+
Sbjct: 193  LYYLRSGSARLGFWIQGREYLLPAGIVLKALAETTDREIYEKLTCCYDEKYEKAKGAVGS 252

Query: 3312 QLVGERVKIILDEVQGLSLFTRAQCIQHIGKYFQSVMDGMDDETDSSVGETVLEEYILVH 3133
            QLVGER KIILDEV+ LSLFT+++C++HIG++FQ VMDG++ ET S+V   VL++YI VH
Sbjct: 253  QLVGERAKIILDEVRDLSLFTQSECLRHIGEHFQPVMDGLEKETFSNVAHAVLKDYIFVH 312

Query: 3132 LQSGHDKYNLLIFMLQKLFAFIDHRATEDNTDALQNHEVLQPGHLITIYLKDKLHEWLFK 2953
            L +  DK+NLLIFMLQKLF+ +D  +  DN D+LQN EVL PGHL+TIYLK+KL EWL K
Sbjct: 313  LNNYDDKFNLLIFMLQKLFSLVDQTSVVDNPDSLQNQEVLLPGHLVTIYLKEKLEEWLRK 372

Query: 2952 ARRLLQDELSKKGQKFEFGSLLDVKKVLDRNPSKSIGTAIESMLKTGRLASQNGLDLQQK 2773
            A+++LQ+E++K    F F S+LDVKKV+D+NPS +I  A+E+MLKTGRL +Q GLDLQQ+
Sbjct: 373  AKKVLQEEIAKNNN-FNFLSVLDVKKVIDKNPSTTISLAVENMLKTGRLVTQTGLDLQQR 431

Query: 2772 GGMTVQAERLNFLRFISHFRSVHRGAAFAGNRNTSVRKLLPEAWGFLCPVHTPDGEPCGL 2593
             G TVQAERLNFLRF+S FR+VHRGA+FAG R TSVRKLLPE+WGFLCPVHTPDGEPCGL
Sbjct: 432  AGYTVQAERLNFLRFLSFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGL 491

Query: 2592 LNHMASTCRITSYFDSKGNIKDFFKIRLSILSVLIGVGMTPSLPKLVRAGPPEVLSVLLD 2413
            LNHM  +CRITSYFDS+G +KDFF IR SIL VL  +GMT SLPKLV+AGPP+VLSVLLD
Sbjct: 492  LNHMTRSCRITSYFDSQGAVKDFFDIRKSILGVLTSLGMTSSLPKLVQAGPPQVLSVLLD 551

Query: 2412 GCVIGSISSNMVEKAVAHIRKLKLSANSGIPDDLEVGYVPLSVGGAYPGLYLFSSPSRFV 2233
            G V+GSI S+ VEK V H+R+LK++A+S IPDDLEVGYVPLS+GGA+PGLYLF+SPSRF+
Sbjct: 552  GRVVGSIPSSQVEKVVVHLRRLKVAASSVIPDDLEVGYVPLSMGGAFPGLYLFTSPSRFI 611

Query: 2232 RPV--ISLNAEKNHDIELIGPFEQVYMEIRCADGGEGGRTDDNPATHEEMHPTGLLSVVA 2059
            RPV  IS+ A +  +IELIGPFEQV+MEIRC DGG GGR+D  PATHEE+HPT +LSVVA
Sbjct: 612  RPVKNISIPAGEGENIELIGPFEQVFMEIRCPDGGNGGRSDAFPATHEEIHPTDMLSVVA 671

Query: 2058 NLTPYSDHNQSPRNMYQCQMAKQTVGFSSQALQFRADQKLYHLQTPQTPIVRTEAYTKYN 1879
            NLTP+SDHNQSPRNMYQCQMAKQT+ FS Q+L+FRADQKLYHLQTPQTPIVRT +YTKY 
Sbjct: 672  NLTPWSDHNQSPRNMYQCQMAKQTMAFSLQSLRFRADQKLYHLQTPQTPIVRTSSYTKYC 731

Query: 1878 IDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMCHTSIYQLETIDLEEQSGKSDHV 1699
            +DE+PTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMCH  IYQ ETIDL E+  +SD  
Sbjct: 732  VDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMCHGQIYQTETIDLSEEGSRSDRA 791

Query: 1698 RQIFARSNIDKSVRSSVDSDGLPYVGQVLHPGQPYCSTNNTLSGAIKEHKLKGSEPVTVD 1519
            +++F RSNIDKS+ S +DSDGLPYVGQ++HP +PYCS  N ++   + +  KGS+PV VD
Sbjct: 792  QRMFRRSNIDKSLHSVIDSDGLPYVGQMIHPNEPYCSIYNEITNTTRTNNRKGSDPVIVD 851

Query: 1518 YVAVDVKHNPP-QKVXXXXXXXXXXXIGDKFSSRHGQKGVCSQLWPDIDMPFSGTTGMRP 1342
            YVA+D K+    QKV           IGDKFSSRHGQKGVCSQLWPDIDMPFSG TGMRP
Sbjct: 852  YVAIDTKNKKHLQKVNIRFRHPRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRP 911

Query: 1341 DLIINPHAFPSRMTIGMLLESIAAKGGCLNGKFVDATPFPSSSRKENKELPIXXXXXXXX 1162
            DLIINPHAFPSRMTI MLLES+AAKGG LNGKFVDATPF SS +  N             
Sbjct: 912  DLIINPHAFPSRMTIAMLLESLAAKGGSLNGKFVDATPFTSSVKNVN--------GGEAK 963

Query: 1161 XXXXSLLDELGPLLTSHGFNSLGSEVLYSGVLGTELVCEIFIGPVYYQRLRHMVSDKFQV 982
                SL+D+LG +L SHGFN  G EVLYSGV GTEL CEIFIGPVYYQRLRHMVSDKFQV
Sbjct: 964  SESESLVDDLGNMLRSHGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQV 1023

Query: 981  RNTGAVDPTTRQPMXXXXXXXGIRFGEMERDSLLAHGAAYLLHDRLHTASDFHVADVCSL 802
            R+TG VD  TRQP+       GIRFGEMERD++LAHGAAYLLHDRLHT SD+H+ADVCSL
Sbjct: 1024 RSTGTVDQITRQPIKGRKRGGGIRFGEMERDAMLAHGAAYLLHDRLHTCSDYHIADVCSL 1083

Query: 801  CGSILTTSFIEPQKKAGQAIAKVTPRGNQRKVTCHACKTSKGMEKVAMPFVFRYLAAELA 622
            CGSILTTSFI+ QK+  + I  + P G  +KV CH+C+TSKGME VAMP+VFRYLAAELA
Sbjct: 1084 CGSILTTSFIQTQKRVVRDIGGLPPVGAPKKVACHSCQTSKGMETVAMPYVFRYLAAELA 1143

Query: 621  AMNVKMTLNLSAGA 580
            AMN+KM + LS GA
Sbjct: 1144 AMNIKMNVQLSGGA 1157



 Score =  122 bits (305), Expect(2) = 4e-45
 Identities = 61/133 (45%), Positives = 83/133 (62%)
 Frame = -3

Query: 4203 LEELLKPHVQSFDHFIDIGIETMLENIKPVKITDKFTNTTLEIKFGAHELSAPQKGHAAI 4024
            L+EL + H+ SFD+ I+ G+E ML+NIKP     K                         
Sbjct: 21   LQELTRHHIDSFDYMIERGLEIMLDNIKPESSRTKH------------------------ 56

Query: 4023 GQRLLPFECRQEKGSYSGKFIVEVCFSYNGRVPLKEKFKFGQLPIMLKSKLCHLRGANAE 3844
             +RLLPFECRQ K SY+GKF  +VCF Y+G+  ++EK+ FGQLPIMLKS+LCHL G +++
Sbjct: 57   -KRLLPFECRQAKISYTGKFEADVCFEYHGKAVIREKYNFGQLPIMLKSRLCHLYGVDSQ 115

Query: 3843 RLVAYREEPTEMG 3805
            +LV++ EE  EMG
Sbjct: 116  QLVSFNEESAEMG 128



 Score = 89.4 bits (220), Expect(2) = 4e-45
 Identities = 40/56 (71%), Positives = 50/56 (89%)
 Frame = -2

Query: 3706 GYFIVNGLERLIRFLIMPKRNYPMNVERDSFRERQDGYTNKAVIIRCVRNDQSSVT 3539
            GYFI+NGLER++R LIMPKRNYPM+  R SFR+R++GYT+KAV+IRCVR  QSS+T
Sbjct: 129  GYFILNGLERVVRLLIMPKRNYPMSTVRGSFRDRREGYTDKAVVIRCVREYQSSLT 184


>ref|XP_004146776.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Cucumis
            sativus]
          Length = 1173

 Score = 1378 bits (3566), Expect = 0.0
 Identities = 678/975 (69%), Positives = 802/975 (82%), Gaps = 3/975 (0%)
 Frame = -3

Query: 3492 LYYLQSGSARLGFWVKGREFLLPIGLVLKALIDTNDHEIYASLTCCYSDIYQKGERSVGT 3313
            LYYL++GSARLGFWV+G+E+LLPIG+VLKALIDT DHEIYASLT CYSD + K + +VGT
Sbjct: 207  LYYLRNGSARLGFWVQGKEYLLPIGVVLKALIDTTDHEIYASLTSCYSDKHGKSKGAVGT 266

Query: 3312 QLVGERVKIILDEVQGLSLFTRAQCIQHIGKYFQSVMDGMDDETDSSVGETVLEEYILVH 3133
            QLVGER KIILDEV+ L+LF   QC+ HIG++FQ VM+G+  E  S+V + VL++YI VH
Sbjct: 267  QLVGERAKIILDEVRDLALFDHRQCLDHIGQHFQPVMEGLGKEKFSTVADAVLKDYIFVH 326

Query: 3132 LQSGHDKYNLLIFMLQKLFAFIDHRATEDNTDALQNHEVLQPGHLITIYLKDKLHEWLFK 2953
            L + +DK+NLLIFM QKLF+ ID  +  DN D+LQN +VL PG LIT+YLK+KL +WL K
Sbjct: 327  LDNNYDKFNLLIFMAQKLFSLIDQTSVPDNPDSLQNQDVLLPGQLITLYLKEKLEDWLQK 386

Query: 2952 ARRLLQDELSKKGQKFEFGSLLDVKKVLDRNPSKSIGTAIESMLKTGRLASQNGLDLQQK 2773
             ++LL+DE+S   + FEF SL  VKKV+D+NPSK + +A+E+MLKTGRL +Q GLDLQQ+
Sbjct: 387  VKKLLEDEISNPSKNFEFCSLAHVKKVMDKNPSKQVSSAVENMLKTGRLVTQTGLDLQQR 446

Query: 2772 GGMTVQAERLNFLRFISHFRSVHRGAAFAGNRNTSVRKLLPEAWGFLCPVHTPDGEPCGL 2593
             G TVQAERLNFLRF+SHFR+VHRGA+FAG R T+VRKLLPE+WGFLCPVHTPDGEPCGL
Sbjct: 447  AGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGL 506

Query: 2592 LNHMASTCRITSYFDSKGNIKDFFKIRLSILSVLIGVGMTPSLPKLVRAGPPEVLSVLLD 2413
            LNH+ STCRITS+F+S+G ++DF+KIR SILSVLI VGM PSLPKLV+ G P+ L+VLLD
Sbjct: 507  LNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMGLPDFLNVLLD 566

Query: 2412 GCVIGSISSNMVEKAVAHIRKLKLSANSGIPDDLEVGYVPLSVGGAYPGLYLFSSPSRFV 2233
            G ++G ISSN VEK VAH+R+LK+ +   IPDDLEVGYVPLS+ GAYPGLYLF+SPSRFV
Sbjct: 567  GRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRFV 626

Query: 2232 RPV--ISLNAEKNHDIELIGPFEQVYMEIRCADGGEGGRTDDNPATHEEMHPTGLLSVVA 2059
            RPV  +S++ E NH+IELIGPFEQV+MEIRC DGG+GGR D+ PATHEE+HPTG+LSVVA
Sbjct: 627  RPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIHPTGMLSVVA 686

Query: 2058 NLTPYSDHNQSPRNMYQCQMAKQTVGFSSQALQFRADQKLYHLQTPQTPIVRTEAYTKYN 1879
            NLTP+SDHNQSPRNMYQCQMAKQT+ FS QA+++RADQKLYHLQTPQTPIVRT  YTKYN
Sbjct: 687  NLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKYN 746

Query: 1878 IDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMCHTSIYQLETIDLEEQSGKSDHV 1699
            IDE+PTGTNAIVAVLAYTGYDMEDAMILNKSSVERGM H  IYQ ETIDL +Q  +S   
Sbjct: 747  IDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSRS 806

Query: 1698 RQIFARSNIDKSVRSSVDSDGLPYVGQVLHPGQPYCSTNNTLSGAIKEHKLKGSEPVTVD 1519
            +++F RSNID SVRS +D+DGLPYVGQ++ P +PYCS  + ++G  +  KLKGSE V VD
Sbjct: 807  QKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKLKGSEAVIVD 866

Query: 1518 YVAVDVKH-NPPQKVXXXXXXXXXXXIGDKFSSRHGQKGVCSQLWPDIDMPFSGTTGMRP 1342
            YV+VDVK+ N PQKV           IGDKFSSRHGQKGVCSQLWPD+DMPF G TGMRP
Sbjct: 867  YVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDVDMPFCGATGMRP 926

Query: 1341 DLIINPHAFPSRMTIGMLLESIAAKGGCLNGKFVDATPFPSSSRKENKELPIXXXXXXXX 1162
            DLIINPHAFPSRMTI ML+ES+AAKGGCLNG+FV+ATPF SS  K N             
Sbjct: 927  DLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSVNKTN--------AGDEE 978

Query: 1161 XXXXSLLDELGPLLTSHGFNSLGSEVLYSGVLGTELVCEIFIGPVYYQRLRHMVSDKFQV 982
                +L+DELG  L   GFN  G EVLYSGV GTEL CEIFIGPVYYQRLRHMVSDK+QV
Sbjct: 979  TNGETLVDELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQV 1038

Query: 981  RNTGAVDPTTRQPMXXXXXXXGIRFGEMERDSLLAHGAAYLLHDRLHTASDFHVADVCSL 802
            R+TG VD  TRQP+       GIRFGEMERDS+LAHGA+YLLHDRLHT SD H+ADVCSL
Sbjct: 1039 RSTGTVDQVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSL 1098

Query: 801  CGSILTTSFIEPQKKAGQAIAKVTPRGNQRKVTCHACKTSKGMEKVAMPFVFRYLAAELA 622
            CGS+LT+SF++P K+A + I  + P    ++VTCHACKTSKGME VAMP+VF+YLAAELA
Sbjct: 1099 CGSVLTSSFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAELA 1158

Query: 621  AMNVKMTLNLSAGAS 577
            AMN+KMTL LS+GA+
Sbjct: 1159 AMNIKMTLQLSSGAA 1173



 Score =  157 bits (396), Expect(2) = 4e-55
 Identities = 75/137 (54%), Positives = 98/137 (71%), Gaps = 2/137 (1%)
 Frame = -3

Query: 4209 ENLEELLKPHVQSFDHFIDIGIETMLENIKPVKITDKFTNTTLEIKFGAHELSAPQKGH- 4033
            E L EL + H++SFDH +D G+ET++ +IKPV+I D FTN  L I  G  EL  PQK   
Sbjct: 12   EALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGKPELYPPQKERN 71

Query: 4032 -AAIGQRLLPFECRQEKGSYSGKFIVEVCFSYNGRVPLKEKFKFGQLPIMLKSKLCHLRG 3856
               I + LLP+ECRQ K SY+GKF+ +VCF Y+ +  ++EKF FGQ PIMLKSKLCHLRG
Sbjct: 72   LRTIREALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFPIMLKSKLCHLRG 131

Query: 3855 ANAERLVAYREEPTEMG 3805
             + ++LV+Y EE +EMG
Sbjct: 132  LDPKKLVSYNEEASEMG 148



 Score = 87.8 bits (216), Expect(2) = 4e-55
 Identities = 38/56 (67%), Positives = 50/56 (89%)
 Frame = -2

Query: 3706 GYFIVNGLERLIRFLIMPKRNYPMNVERDSFRERQDGYTNKAVIIRCVRNDQSSVT 3539
            GYF++NGLER++R LI PKRNYP ++ R+SF +R++GYT+KAV+IRCVR DQSSVT
Sbjct: 149  GYFVMNGLERVVRLLIAPKRNYPTSMVRNSFSDRREGYTDKAVVIRCVREDQSSVT 204


>ref|XP_003542805.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Glycine
            max]
          Length = 1175

 Score = 1367 bits (3539), Expect = 0.0
 Identities = 679/974 (69%), Positives = 800/974 (82%), Gaps = 3/974 (0%)
 Frame = -3

Query: 3492 LYYLQSGSARLGFWVKGREFLLPIGLVLKALIDTNDHEIYASLTCCYSDIYQKGERSVGT 3313
            LYYL++GSARLGFW++GRE+LLP+G++LKALIDT D EIY +LT CY++ Y+KG+ +VGT
Sbjct: 207  LYYLRNGSARLGFWLRGREYLLPVGIILKALIDTTDREIYVNLTSCYNEKYEKGKGAVGT 266

Query: 3312 QLVGERVKIILDEVQGLSLFTRAQCIQHIGKYFQSVMDGMDDETDSSVGETVLEEYILVH 3133
            QLVGER KIILDE++ LSLFTR QC+++IG++FQ VM+ + +++   V + VL++ ILVH
Sbjct: 267  QLVGERAKIILDELRDLSLFTRLQCLEYIGEHFQPVMNELKNDSYPIVADAVLKDCILVH 326

Query: 3132 LQSGHDKYNLLIFMLQKLFAFIDHRATEDNTDALQNHEVLQPGHLITIYLKDKLHEWLFK 2953
            L +  DK+NLLIFMLQKLF+ ID  +  DN D+LQNHEVL PGHLIT+YLK+KL +WL K
Sbjct: 327  LDNNFDKFNLLIFMLQKLFSLIDQTSVPDNPDSLQNHEVLLPGHLITLYLKEKLEDWLQK 386

Query: 2952 ARRLLQDELSKKGQKFEFGSLLDVKKVLDRNPSKSIGTAIESMLKTGRLASQNGLDLQQK 2773
             RRLL DE+ KK +KF+F  ++ VKKV+D+N  K + TA+E+MLKTGRL +Q GLDLQQ+
Sbjct: 387  GRRLLLDEIDKKSKKFDFSDIVQVKKVMDKNSPKQVSTAVENMLKTGRLVTQTGLDLQQR 446

Query: 2772 GGMTVQAERLNFLRFISHFRSVHRGAAFAGNRNTSVRKLLPEAWGFLCPVHTPDGEPCGL 2593
             G TVQAERLNFLRF+SHFR+VHRGA+FAG R T+VRKLLPE+WGFLCPVHTPDGEPCGL
Sbjct: 447  AGYTVQAERLNFLRFLSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGL 506

Query: 2592 LNHMASTCRITSYFDSKGNIKDFFKIRLSILSVLIGVGMTPSLPKLVRAGPPEVLSVLLD 2413
            LNHM  T RITS+FDS+GNIKD+FKI++SIL+VL+ VGMTPSLPK+   GPPE L+VLLD
Sbjct: 507  LNHMTCTSRITSFFDSQGNIKDYFKIKMSILNVLLEVGMTPSLPKIFLPGPPEALTVLLD 566

Query: 2412 GCVIGSISSNMVEKAVAHIRKLKLSANSGIPDDLEVGYVPLSVGGAYPGLYLFSSPSRFV 2233
            GCV+G I+S+ VEK VAHIR+LK+S+ + IPDD+EVGYVPLS+GGAYPGLYL +SPSRFV
Sbjct: 567  GCVVGCIASSEVEKVVAHIRELKVSSVAVIPDDMEVGYVPLSMGGAYPGLYLCTSPSRFV 626

Query: 2232 RPV--ISLNAEKNHDIELIGPFEQVYMEIRCADGGEGGRTDDNPATHEEMHPTGLLSVVA 2059
            RPV  IS+ ++ + +IELIGPFEQV+MEIRC DGG+GGR    PATHEE+HPT +LSVVA
Sbjct: 627  RPVRNISIASDGSENIELIGPFEQVFMEIRCPDGGDGGRKSSFPATHEEIHPTVMLSVVA 686

Query: 2058 NLTPYSDHNQSPRNMYQCQMAKQTVGFSSQALQFRADQKLYHLQTPQTPIVRTEAYTKYN 1879
            NLTP+SDHNQSPRNMYQCQMAKQT+ FSSQ +Q RADQKLYHLQTPQTPIVRT  YTKYN
Sbjct: 687  NLTPWSDHNQSPRNMYQCQMAKQTMAFSSQTIQHRADQKLYHLQTPQTPIVRTSTYTKYN 746

Query: 1878 IDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMCHTSIYQLETIDLEEQSGKSDHV 1699
            IDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGM H  IYQ ETIDL EQ G+SD  
Sbjct: 747  IDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLTEQGGRSDRS 806

Query: 1698 RQIFARSNIDKSVRSSVDSDGLPYVGQVLHPGQPYCSTNNTLSGAIKEHKLKGSEPVTVD 1519
             ++F +SNI+KS   S+DSDGLP+VGQ++ P +PYCS  N ++ +I   K KGSE V VD
Sbjct: 807  SRMFRKSNIEKSACPSIDSDGLPHVGQMIRPDEPYCSIYNEVTSSIHTLKRKGSEAVYVD 866

Query: 1518 YVAVDVKHNPP-QKVXXXXXXXXXXXIGDKFSSRHGQKGVCSQLWPDIDMPFSGTTGMRP 1342
            YVA DVK+    QKV           IGDKFSSRHGQKGVCSQLWPD+DMPFSGTTGMRP
Sbjct: 867  YVAADVKNKKHLQKVNIRFRHPRNPVIGDKFSSRHGQKGVCSQLWPDVDMPFSGTTGMRP 926

Query: 1341 DLIINPHAFPSRMTIGMLLESIAAKGGCLNGKFVDATPFPSSSRKENKELPIXXXXXXXX 1162
            DLIINPHAFPSRMTI MLLES+AAKGG L G+FVDATPF SS  K++ E           
Sbjct: 927  DLIINPHAFPSRMTIAMLLESVAAKGGSLRGEFVDATPFRSSVTKDSGE---------SD 977

Query: 1161 XXXXSLLDELGPLLTSHGFNSLGSEVLYSGVLGTELVCEIFIGPVYYQRLRHMVSDKFQV 982
                SL+D+LG LL   GFN  G EVLYSGV GTEL CEIFIGPVYYQRLRHMVSDKFQV
Sbjct: 978  SKSGSLVDDLGLLLREKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQV 1037

Query: 981  RNTGAVDPTTRQPMXXXXXXXGIRFGEMERDSLLAHGAAYLLHDRLHTASDFHVADVCSL 802
            R+TG +D  TRQP+       GIRFGEMERDSLLAHGAAYLLHDRLHT SD+H+ADVCSL
Sbjct: 1038 RSTGTIDQVTRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHIADVCSL 1097

Query: 801  CGSILTTSFIEPQKKAGQAIAKVTPRGNQRKVTCHACKTSKGMEKVAMPFVFRYLAAELA 622
            CGS+L T+FI+PQK+  + I  + P    +KVTCHAC+TSKGME VAMP+VFRYLAAELA
Sbjct: 1098 CGSMLATTFIQPQKRPVREIGGLPPGRAPKKVTCHACQTSKGMETVAMPYVFRYLAAELA 1157

Query: 621  AMNVKMTLNLSAGA 580
            AMN+KMTL LS GA
Sbjct: 1158 AMNIKMTLKLSDGA 1171



 Score =  145 bits (366), Expect(2) = 9e-52
 Identities = 73/140 (52%), Positives = 97/140 (69%), Gaps = 2/140 (1%)
 Frame = -3

Query: 4218 PNCENLEELLKPHVQSFDHFIDIGIETMLENIKPVKITDKFTNTTLEIKFGAHELSAPQK 4039
            P+ E L EL K H++SFD+ +D G++TML +IKPV++ D FT+T L I      L  PQK
Sbjct: 9    PDFEALRELFKHHIESFDYMVDAGLDTMLGHIKPVEVFDDFTSTKLRIWLDNPVLYPPQK 68

Query: 4038 GHAAIGQR--LLPFECRQEKGSYSGKFIVEVCFSYNGRVPLKEKFKFGQLPIMLKSKLCH 3865
               +   R  LLPFECRQ K SYSGK  ++VCF YN    ++E   FGQ PIML+SKLC+
Sbjct: 69   ERISRTMREALLPFECRQAKISYSGKITIDVCFQYNDGPIIRENVNFGQFPIMLQSKLCN 128

Query: 3864 LRGANAERLVAYREEPTEMG 3805
            LRGA+ ++LV+Y+EE +EMG
Sbjct: 129  LRGADPQKLVSYKEEASEMG 148



 Score = 88.2 bits (217), Expect(2) = 9e-52
 Identities = 38/56 (67%), Positives = 52/56 (92%)
 Frame = -2

Query: 3706 GYFIVNGLERLIRFLIMPKRNYPMNVERDSFRERQDGYTNKAVIIRCVRNDQSSVT 3539
            GYFI+NGLER++R LI+PKRNYPM++ R+SF +R++GYT+KAV+IRCVR DQSS++
Sbjct: 149  GYFILNGLERVVRLLILPKRNYPMSMVRNSFSDRREGYTDKAVVIRCVRADQSSLS 204