BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00005642
         (2351 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270559.1| PREDICTED: DNA-directed RNA polymerases I an...   531   e-148
ref|XP_002522786.1| DNA-directed RNA polymerase I/III subunits, ...   496   e-137
ref|XP_002300385.1| predicted protein [Populus trichocarpa] gi|2...   475   e-131
ref|XP_004148257.1| PREDICTED: DNA-directed RNA polymerases I an...   473   e-131
ref|XP_002888129.1| ATRPAC43 [Arabidopsis lyrata subsp. lyrata] ...   457   e-126

>ref|XP_002270559.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
            [Vitis vinifera] gi|296089944|emb|CBI39763.3| unnamed
            protein product [Vitis vinifera]
          Length = 372

 Score =  531 bits (1369), Expect = e-148
 Identities = 267/362 (73%), Positives = 294/362 (81%), Gaps = 2/362 (0%)
 Frame = +1

Query: 1072 ALDMPDVPMGRLPPHLERQRTRVLCNSDAPTHTESVLSSGAYASMELDNSGLLGHFKDNF 1251
            ALDMPDVP G+LPPH+E QRTRVLCN DAPTHTE+V  SGAY+SM +DNS  +  F +NF
Sbjct: 6    ALDMPDVPKGQLPPHIELQRTRVLCNFDAPTHTENVQYSGAYSSMGVDNSLRMDQFCNNF 65

Query: 1252 EVDVIRLNEDEMEFDMIGIDASVANAFRRILIAEVPTMAIEKVLIANNTSVVQDEVLAHR 1431
             V+VIRL+ED+MEFDMIGID S+ANAFRRILIAE+PTMAIEKVLIANNTS+VQDEVLAHR
Sbjct: 66   RVEVIRLSEDDMEFDMIGIDPSIANAFRRILIAELPTMAIEKVLIANNTSIVQDEVLAHR 125

Query: 1432 LGLIPIKVDPRVFDYISENDTPNEKNTIVFKLHVRCTHG--RLTVKSDELQWLPHGSGFL 1605
            LGLIPI  DPR+FD +SENDTPNEKNTIVF LHVRC  G  RLTVKS+EL+WLPHGS F 
Sbjct: 126  LGLIPINADPRLFDDLSENDTPNEKNTIVFNLHVRCERGGPRLTVKSNELKWLPHGSEFP 185

Query: 1606 VETENPQLIQKSGSKTYTSFGRSQAEMSDFESNPIGPKHEDIIIAKLGTGQEIELEAHAV 1785
            + TEN      S  KTYTSF  SQ  + +F    IGPKH DIIIAKLG GQEIELEAHAV
Sbjct: 186  LATENTTSSSTSKPKTYTSFSCSQDSLPEFSDKSIGPKHPDIIIAKLGPGQEIELEAHAV 245

Query: 1786 KGMGKTHAKWSPVATAWYRMLPXXXXXXXXXXXXXXXXKQKCPVKVFDIEDTLEGKKKAF 1965
            KGMGKTHAKWSPVATAWYRMLP                 +KCPV VFDIED  +GKKKA 
Sbjct: 246  KGMGKTHAKWSPVATAWYRMLPEVVLLQEIEDEKAEELVKKCPVNVFDIEDIAKGKKKAT 305

Query: 1966 VANPRACTLCRECIRGEEWQKRVALRRVKDHFIFTIESTGALPPEVLFTEAVKILEDKCE 2145
            VA PRACTLCRECIRG++W K VA+RRVK+HFIFTIESTGALPPEVLF EAVK+LEDKCE
Sbjct: 306  VARPRACTLCRECIRGDDWDKHVAIRRVKNHFIFTIESTGALPPEVLFNEAVKVLEDKCE 365

Query: 2146 RV 2151
            RV
Sbjct: 366  RV 367


>ref|XP_002522786.1| DNA-directed RNA polymerase I/III subunits, putative [Ricinus
            communis] gi|223538024|gb|EEF39637.1| DNA-directed RNA
            polymerase I/III subunits, putative [Ricinus communis]
          Length = 374

 Score =  496 bits (1276), Expect = e-137
 Identities = 250/365 (68%), Positives = 287/365 (78%), Gaps = 2/365 (0%)
 Frame = +1

Query: 1063 KISALDMPDVPMGRLPPHLERQRTRVLCNSDAPTHTESVLSSGAYASMELDNSGLLGHFK 1242
            K S  D+PDVPMG+LPPHL+ QRTRV+C SDAP HT++++ SGAYAS+ +DNS  L  F+
Sbjct: 13   KFSIWDLPDVPMGQLPPHLQLQRTRVVCKSDAPIHTDNIVYSGAYASIGVDNSLQLDCFR 72

Query: 1243 DNFEVDVIRLNEDEMEFDMIGIDASVANAFRRILIAEVPTMAIEKVLIANNTSVVQDEVL 1422
            DNF+V+VI+L +D+MEFDMIGIDA++ANAFRRILI+E+PTMAIEKVLIANNTS++QDEVL
Sbjct: 73   DNFKVEVIQLTKDDMEFDMIGIDAAIANAFRRILISELPTMAIEKVLIANNTSLIQDEVL 132

Query: 1423 AHRLGLIPIKVDPRVFDYISENDTPNEKNTIVFKLHVRCTHG--RLTVKSDELQWLPHGS 1596
            AHRLGLIPI  DPR+F+Y+S NDTPNEKNTIVFKLH  C  G  R TV S+EL+WLP GS
Sbjct: 133  AHRLGLIPINADPRLFEYLSANDTPNEKNTIVFKLHASCKRGEPRRTVYSEELKWLPGGS 192

Query: 1597 GFLVETENPQLIQKSGSKTYTSFGRSQAEMSDFESNPIGPKHEDIIIAKLGTGQEIELEA 1776
              L E+E       S   TYTSF     +  DF   P+ P  + II+AKLG GQEIELEA
Sbjct: 193  QLLKESEKAD----SKPSTYTSF----TDKQDFIPKPVSPSEDKIIVAKLGPGQEIELEA 244

Query: 1777 HAVKGMGKTHAKWSPVATAWYRMLPXXXXXXXXXXXXXXXXKQKCPVKVFDIEDTLEGKK 1956
            HAVKG+GKTHAKWSPVATAWYRMLP                 +KCPV VFDIED   GKK
Sbjct: 245  HAVKGLGKTHAKWSPVATAWYRMLPEVVLLEDIEDEIAEELTKKCPVNVFDIEDIGNGKK 304

Query: 1957 KAFVANPRACTLCRECIRGEEWQKRVALRRVKDHFIFTIESTGALPPEVLFTEAVKILED 2136
            +A VA PRACTLCRECIRG EW KRV+LRRVKDHFIFTIESTGALPPEVLFTEAVK+LED
Sbjct: 305  RATVARPRACTLCRECIRGGEWDKRVSLRRVKDHFIFTIESTGALPPEVLFTEAVKVLED 364

Query: 2137 KCERV 2151
            KCERV
Sbjct: 365  KCERV 369


>ref|XP_002300385.1| predicted protein [Populus trichocarpa] gi|222847643|gb|EEE85190.1|
            predicted protein [Populus trichocarpa]
          Length = 390

 Score =  475 bits (1222), Expect = e-131
 Identities = 250/380 (65%), Positives = 284/380 (74%), Gaps = 3/380 (0%)
 Frame = +1

Query: 1021 KMSCITSEAPPPKPKISALDMPDVPMGRLPPHLERQRTRVLCNSDAPTHTESVLSSGAYA 1200
            +MS    E    +   S  ++ DV  G+LPPH+ +Q TRV C  DAPT+TE++  SG+YA
Sbjct: 11   RMSSEEEEQQQKEEGFSYWNLKDVERGQLPPHIRKQGTRVYCKPDAPTNTETLQYSGSYA 70

Query: 1201 SMELDNSGLLGHFKDNFEVDVIRLNEDEMEFDMIGIDASVANAFRRILIAEVPTMAIEKV 1380
            SM +DNS  L  F++NF + VI L++D+MEFDMIGIDA+VANAFRRILI+EVPTMAIEKV
Sbjct: 71   SMGVDNSLRLDSFRENFRIKVIALDKDKMEFDMIGIDAAVANAFRRILISEVPTMAIEKV 130

Query: 1381 LIANNTSVVQDEVLAHRLGLIPIKVDPRVFDYISENDTPNEKNTIVFKLHVRCTHG--RL 1554
             IANNTSV+QDEVLAHRLGLIPIKVDPR+F+Y+S NDTPNEKNTIV KLH RC  G  R 
Sbjct: 131  FIANNTSVIQDEVLAHRLGLIPIKVDPRLFEYLSANDTPNEKNTIVLKLHARCNRGQPRC 190

Query: 1555 TVKSDELQWLPHGSGFLVETENPQLIQKSGSKTYTSFGRSQAEMSDFESNPIGPKHEDII 1734
            +V S EL+WLP+GS F  E+E P     S   TYTSF   Q  + +F  NPI    EDII
Sbjct: 191  SVYSQELKWLPNGSEFAKESEKPD----SKPSTYTSFSCGQDSLPEFAGNPISTV-EDII 245

Query: 1735 IAKLGTGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPXXXXXXXXXXXXXXXXKQKCP 1914
            +AKLG GQEIELEAHAVKGMGKTHAKWSPV TAWYRM P                 +KCP
Sbjct: 246  LAKLGPGQEIELEAHAVKGMGKTHAKWSPVGTAWYRMFPEVVLLENIKGEDAEELIRKCP 305

Query: 1915 VKVFDIEDTLEGKKKAFVANPRACTLCRECIRG-EEWQKRVALRRVKDHFIFTIESTGAL 2091
              VFDIEDT   KKKA VA+ RACTLCRECIRG EEW+KRVAL RVKDHFIFTIESTGAL
Sbjct: 306  SGVFDIEDTGNAKKKAIVADSRACTLCRECIRGDEEWEKRVALHRVKDHFIFTIESTGAL 365

Query: 2092 PPEVLFTEAVKILEDKCERV 2151
            PPEVLFTEAVKILE KCERV
Sbjct: 366  PPEVLFTEAVKILEAKCERV 385


>ref|XP_004148257.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1-like
            [Cucumis sativus] gi|449522768|ref|XP_004168398.1|
            PREDICTED: DNA-directed RNA polymerases I and III subunit
            RPAC1-like [Cucumis sativus]
          Length = 391

 Score =  473 bits (1218), Expect = e-131
 Identities = 243/362 (67%), Positives = 288/362 (79%), Gaps = 3/362 (0%)
 Frame = +1

Query: 1075 LDMPDVPMGRLPPHLERQRTRVLCNSDAPTHTESVLSSGAYASMELDNSGLLGHFKDNFE 1254
            +++PDVPM +LPPH+E QRTRV C +DAP HT+++  SGA+ASM  DNS  L +F++NF+
Sbjct: 30   MNLPDVPM-KLPPHVELQRTRVECKADAPIHTDTIQYSGAFASMGFDNSLRLDNFRNNFK 88

Query: 1255 VDVIRLNEDEMEFDMIGIDASVANAFRRILIAEVPTMAIEKVLIANNTSVVQDEVLAHRL 1434
            ++VI L ED++EFDMIGID ++ANAFRRILI+EVPTMAIEKVL ANNTS+VQDEVLAHRL
Sbjct: 89   IEVIDLKEDDIEFDMIGIDPALANAFRRILISEVPTMAIEKVLFANNTSIVQDEVLAHRL 148

Query: 1435 GLIPIKVDPRVFDYISENDTPNEKNTIVFKLHVRCTHG--RLTVKSDELQWLPHGSGFLV 1608
            GL+PI+VDPR+F Y S+ D PNE NTIVF+LH  C  G  RLTV S  L WLP+GS F +
Sbjct: 149  GLVPIRVDPRLFKY-SDKDAPNENNTIVFRLHACCERGKPRLTVTSKALTWLPNGSEFPL 207

Query: 1609 ETENPQLIQKSGSKTYTSFGRSQAEMS-DFESNPIGPKHEDIIIAKLGTGQEIELEAHAV 1785
             ++  + +  S  KTYTSF  SQ  +S +F +NPIGPK  DII+A+LG GQEIELEAHAV
Sbjct: 208  VSD--KSVSNSKPKTYTSFSCSQNTLSKEFSNNPIGPKDSDIILARLGPGQEIELEAHAV 265

Query: 1786 KGMGKTHAKWSPVATAWYRMLPXXXXXXXXXXXXXXXXKQKCPVKVFDIEDTLEGKKKAF 1965
            KGMGKTHAKWSPVATAWYRMLP                ++KCPV VFDIED + GKK+A 
Sbjct: 266  KGMGKTHAKWSPVATAWYRMLPEVVLMEEIEDELAEELEKKCPVNVFDIED-IAGKKRAT 324

Query: 1966 VANPRACTLCRECIRGEEWQKRVALRRVKDHFIFTIESTGALPPEVLFTEAVKILEDKCE 2145
            VA PR CTLCRECIRG+ W+KRVALRRVKDHFIF IESTGALPPEVLFTEAVKILEDKCE
Sbjct: 325  VARPRDCTLCRECIRGDAWEKRVALRRVKDHFIFKIESTGALPPEVLFTEAVKILEDKCE 384

Query: 2146 RV 2151
            R+
Sbjct: 385  RL 386


>ref|XP_002888129.1| ATRPAC43 [Arabidopsis lyrata subsp. lyrata]
            gi|297333970|gb|EFH64388.1| ATRPAC43 [Arabidopsis lyrata
            subsp. lyrata]
          Length = 385

 Score =  457 bits (1175), Expect = e-126
 Identities = 239/381 (62%), Positives = 279/381 (73%), Gaps = 8/381 (2%)
 Frame = +1

Query: 1033 ITSEAPPPKPKISALDMPDVPMGRLPPHLERQRTRVLCNSDAPTHTESVLSSGAYASMEL 1212
            +T E        +  D+PDVP G LPPHLE QRTR +C +DAP H  SVL SGAYASM +
Sbjct: 10   VTDEEKQFAKNFNIFDLPDVPTG-LPPHLELQRTRAVCKNDAPIHPTSVLYSGAYASMGV 68

Query: 1213 DNSGLLGHFKDNFEVDVIRLNEDEMEFDMIGIDASVANAFRRILIAEVPTMAIEKVLIAN 1392
            DNS  L +F ++F+VDVI L E  M FDMIG+ A +ANAFRRIL+AE+P+MAIEKV +AN
Sbjct: 69   DNSVRLENFSEDFKVDVISLTETYMVFDMIGVPAGIANAFRRILLAELPSMAIEKVFVAN 128

Query: 1393 NTSVVQDEVLAHRLGLIPIKVDPRVFDYISENDTPNEKNTIVFKLHVRCTHG--RLTVKS 1566
            NTSV+QDEVLAHRLGLIPI  DPR+F+Y+SEND PNEKNTIVFKLHV+C  G  R  V +
Sbjct: 129  NTSVIQDEVLAHRLGLIPIAADPRLFEYLSENDQPNEKNTIVFKLHVKCPKGDPRRKVLT 188

Query: 1567 DELQWLPHGSGFLVETENPQLIQKSGS-----KTYTSFGRSQAEMSDFESNPIGPKHEDI 1731
             EL+WLP+GS         +L+++SG      KTYTSF  SQ     F  NPI P  +DI
Sbjct: 189  SELKWLPNGS---------ELVKESGGLTTKPKTYTSFSHSQDSFPGFAKNPITPSFQDI 239

Query: 1732 IIAKLGTGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPXXXXXXXXXXXXXXXXKQKC 1911
            +IAKLG GQEIELEAHAVKG+GKTHAKWSPVATAWYRMLP                 + C
Sbjct: 240  LIAKLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEVILLKEFEGKHAEELVKVC 299

Query: 1912 PVKVFDIEDTLEGKKKAFVANPRACTLCRECIR-GEEWQKRVALRRVKDHFIFTIESTGA 2088
            P KVFDIED  +G+K+A VA PR C+LCRECIR G EW K+V LRRVK+HFIFTIESTG+
Sbjct: 300  PKKVFDIEDMGQGRKRATVARPRDCSLCRECIREGVEWAKQVDLRRVKNHFIFTIESTGS 359

Query: 2089 LPPEVLFTEAVKILEDKCERV 2151
             PP+VLF EAVKILEDKCERV
Sbjct: 360  QPPDVLFNEAVKILEDKCERV 380