BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00005604
         (1144 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis ...    91   4e-16
ref|XP_002305539.1| f-box family protein [Populus trichocarpa] g...    91   5e-16
ref|XP_002313690.1| f-box family protein [Populus trichocarpa] g...    91   7e-16
emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]    86   2e-14
ref|XP_002528428.1| conserved hypothetical protein [Ricinus comm...    84   7e-14

>ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
          Length = 389

 Score = 91.3 bits (225), Expect = 4e-16
 Identities = 85/272 (31%), Positives = 131/272 (48%), Gaps = 9/272 (3%)
 Frame = -1

Query: 1129 GSVCTIASNCMREFYIYKAVML--PCAG---VVMVIHGLNKMLAFCKVSDENKKWISVEG 965
            G V T +   MR+ +I K ++   P  G   + +VI      LA C+ SD++  W  +E 
Sbjct: 147  GDVYTRSLKKMRDSFIKKTILSSSPANGSDFIAVVILNQTGDLALCRKSDDS--WTFLED 204

Query: 964  CEGNFNDVTIFKGEFYAVKHNGSVYVVCGGFDTSLTPFVKFVIGQPVNWGYYKKYLVEAR 785
             +    DV   +G FYAV   GS+  VC    +S  P V  +I  P  +G   +YLVE+ 
Sbjct: 205  AQSYAEDVIFHRGLFYAVNKYGSI-AVCDVSGSS--PRVS-IIEMPQQFGGDLQYLVESG 260

Query: 784  GELFLLDR---IRYQLQPGHDEAD-RTLVFSIKKIIDLNGKIIELNEPKFVSVDYIGKDC 617
             EL L+ R   + Y ++P       RT  F + ++        +L  P++  V  +G D 
Sbjct: 261  EELLLVTRYLDLTYDVEPDQTSLIYRTTRFQVCRL--------DLKAPRWEVVSSLG-DR 311

Query: 616  AVFVGCNDSFTRLTSDVPDCKGNSIYFTDDFVDGVSDMNNVNIGSILENFVNEPIGRQDI 437
            A+F+G N S +  + D P CKGN IY+TDD+    S+ N   IG           G QD+
Sbjct: 312  ALFLGENLSLSLSSVDFPGCKGNCIYYTDDY----SEDNYDGIG-----------GEQDL 356

Query: 436  GAWDMKANVFDRLIYPSASKLMNPPPVWFTTN 341
            G ++++    + L   S  ++  PPP+W T N
Sbjct: 357  GIFNLEDGSIEPLPC-SHFRIRWPPPLWVTPN 387


>ref|XP_002305539.1| f-box family protein [Populus trichocarpa]
            gi|222848503|gb|EEE86050.1| f-box family protein [Populus
            trichocarpa]
          Length = 469

 Score = 90.9 bits (224), Expect = 5e-16
 Identities = 76/247 (30%), Positives = 122/247 (49%), Gaps = 14/247 (5%)
 Frame = -1

Query: 1051 VVMVIHGLNKMLAFCKVSDENKKWISVEGCEGNFNDVTIFKGEFYAVKHNGSVYVVCGGF 872
            V++ IH   K+  F      +K+W  +      F+DV ++KG FYAV + G   VV    
Sbjct: 175  VLLTIHVSGKLAIF---KSGDKRWTIINEMPSPFDDVIVYKGRFYAVDNTGRTVVV--AM 229

Query: 871  DTSLTPFVKFVIGQPVNWGYYKKYLVEARGELFLLDRI-----RYQLQPGHD-------- 731
            DT+L      ++G PV +G  KKYLVE++G+L L+D          L  GHD        
Sbjct: 230  DTNLG-----LVGNPV-FGGDKKYLVESKGDLLLVDMYLSIDSDEGLSIGHDVVQDLVQY 283

Query: 730  EADRTLVFSIKKIIDLNGKIIELNEPKFVSVDYIGKDCAVFVGCNDSFTRLTSDVPDCKG 551
             ++RT+ F + K+ +     IE+N+          +D  +F+G + +F+   S++  CKG
Sbjct: 284  MSERTVWFKVFKLNEEGKCWIEVNDL---------EDRVLFLGDDLTFSASASELSGCKG 334

Query: 550  NSIYFTDDFVDGVSDMNNVNIGSILENFVNEPIGRQDIGAWDMKANVFDRL-IYPSASKL 374
            N I+F DDF     + ++   GS+         GR DIG +++++     L  +P  SK+
Sbjct: 335  NCIFFNDDFFYSRGEGDD---GSL--------FGR-DIGVFELESGCIGPLRNFPDNSKM 382

Query: 373  MNPPPVW 353
              PPP W
Sbjct: 383  FWPPPDW 389


>ref|XP_002313690.1| f-box family protein [Populus trichocarpa]
            gi|222850098|gb|EEE87645.1| f-box family protein [Populus
            trichocarpa]
          Length = 410

 Score = 90.5 bits (223), Expect = 7e-16
 Identities = 79/260 (30%), Positives = 130/260 (50%), Gaps = 12/260 (4%)
 Frame = -1

Query: 1087 YIYKAVM--LPCAG--VVMVIHGLNKMLAFCKVSDENKKWISVEGCEGNFNDVTIFKGEF 920
            Y+ K VM  L C    V++ IH   K+  F      +K+W  +      F+DV ++KG F
Sbjct: 159  YMEKVVMIWLNCETEFVLLTIHVSGKLAMF---KSGDKRWTIINEMPSPFDDVIVYKGRF 215

Query: 919  YAVKHNGSVYVVCGGFDTSLTPFVKFVIGQPVNWGYYKKYLVEARGELFLLDR-----IR 755
            YAV + G   VV    DT L      ++G PV +G  KKYLVE++G+L L+D        
Sbjct: 216  YAVDNTGRTVVV--ALDTDLG-----LVGDPV-FGGDKKYLVESKGDLLLVDMYLSIDTD 267

Query: 754  YQLQPGHDEADRTLVFSIKKIIDLNGKIIELNE--PKFVSVDYIGKDCAVFVGCNDSFTR 581
              L  G+D     + +  ++ +    K+ +LNE    ++ V  + +D  +F+G + +F+ 
Sbjct: 268  EGLSIGNDVVQDLVQYMSERTVRF--KVFKLNEEGKSWIEVKNL-EDRVLFLGDDSTFSA 324

Query: 580  LTSDVPDCKGNSIYFTDDFVDGVSDMNNVNIGSILENFVNEPIGRQDIGAWDMKANVFDR 401
              S++  CKGN I+F D+F     + ++   GS+        IGR DIG +++++     
Sbjct: 325  SASELSGCKGNCIFFEDNFFYSREEGDD---GSM--------IGR-DIGVFELESGCIGP 372

Query: 400  L-IYPSASKLMNPPPVWFTT 344
            L  +P  SK+  PPP W  +
Sbjct: 373  LRNFPDYSKMFWPPPDWIAS 392


>emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]
          Length = 389

 Score = 85.9 bits (211), Expect = 2e-14
 Identities = 85/269 (31%), Positives = 130/269 (48%), Gaps = 6/269 (2%)
 Frame = -1

Query: 1129 GSVCTIASNCMREFYIYKAVML--PCAG---VVMVIHGLNKMLAFCKVSDENKKWISVEG 965
            G V T +   MR+ +I K ++   P  G   + +VI      LA C+ SD++  W  +E 
Sbjct: 147  GDVYTRSLKKMRDSFIKKTILSSSPANGSDFIAVVILNQTGDLALCRKSDDS--WTFLED 204

Query: 964  CEGNFNDVTIFKGEFYAVKHNGSVYVVCGGFDTSLTPFVKFVIGQPVNWGYYKKYLVEAR 785
             +    DV   +G FYAV   GS+  VC    +S  P V  +I  P  +G   +YLVE+ 
Sbjct: 205  AQSYSEDVIFHRGLFYAVNKYGSI-AVCDVSGSS--PRVS-IIEMPQQFGGDLQYLVESG 260

Query: 784  GELFLLDRIRYQLQPGHD-EADRTLVFSIKKIIDLNGKIIELNEPKFVSVDYIGKDCAVF 608
             EL L+ R    L   +D E D+T +  I +        ++   P++  V  +G D A+F
Sbjct: 261  EELLLVTRY---LDLTYDVEXDQTSL--IYRTTRFQVCRLDSKAPRWEVVSSLG-DRALF 314

Query: 607  VGCNDSFTRLTSDVPDCKGNSIYFTDDFVDGVSDMNNVNIGSILENFVNEPIGRQDIGAW 428
            +G N S +  + D P CKGN IY+TDD+    S+ N   IG           G QD+G +
Sbjct: 315  LGENLSLSLSSVDFPGCKGNCIYYTDDY----SEDNYDGIG-----------GEQDLGIF 359

Query: 427  DMKANVFDRLIYPSASKLMNPPPVWFTTN 341
            +++    + L   S  ++  PPP+W T N
Sbjct: 360  NLEDGSIEPLPC-SHFRIRWPPPLWVTPN 387


>ref|XP_002528428.1| conserved hypothetical protein [Ricinus communis]
            gi|223532164|gb|EEF33970.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 339

 Score = 84.0 bits (206), Expect = 7e-14
 Identities = 63/240 (26%), Positives = 110/240 (45%), Gaps = 7/240 (2%)
 Frame = -1

Query: 1051 VVMVIHGLNKMLAFCKVSDENKKWISVEGCEGNFNDVTIFKGEFYAVKHNGSVYVVCGGF 872
            V++ IH   K+  F      +++W  ++     ++DV ++KG FYAV + G   +V    
Sbjct: 113  VLLTIHVSGKLAMF---KSGDRRWTIIQDMPSPYDDVIVYKGNFYAVDNTGRTVIVRLNT 169

Query: 871  DTSLTPFVKFVIGQPVNWGYYKKYLVEARGELFL------LDRIRYQLQPGHDEADRTLV 710
            +  L       I  PV +G  KKYLVE+ G+L L      +D     L  G +  +    
Sbjct: 170  ELGL-------IANPV-FGGDKKYLVESLGDLLLVDMYLSIDTAEGGLSFGEEFLEHLAQ 221

Query: 709  FSIKKIIDLNGKIIELNEPKFVSVDYIGKDCAVFVGCNDSFTRLTSDVPDCKGNSIYFTD 530
            +  ++ +      ++     ++ V  +G D  +F+G + +F+   SD+  CKGN I+F D
Sbjct: 222  YMSERTVRFKVFKLDKEAQTWIEVKSLG-DRVLFLGDDSTFSASVSDLSGCKGNCIFFVD 280

Query: 529  DFVDGVSDMNNVNIGSILENFVNEPIGRQDIGAWDMKANVFDRL-IYPSASKLMNPPPVW 353
            +F     +    N G       +  +  +DIG +D++      L  YP  +K+  PPP W
Sbjct: 281  NFFYSRDENLRANGGD------DGVLAGRDIGVFDLETGCIGPLGNYPEYAKMFWPPPHW 334