BLASTX nr result
ID: Coptis24_contig00005495
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00005495 (993 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002308787.1| f-box family protein [Populus trichocarpa] g... 138 2e-30 ref|XP_003610528.1| F-box family protein [Medicago truncatula] g... 129 1e-27 ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus ... 126 9e-27 ref|NP_001241466.1| uncharacterized protein LOC100815072 [Glycin... 123 6e-26 ref|XP_003546119.1| PREDICTED: F-box/kelch-repeat protein At3g23... 121 3e-25 >ref|XP_002308787.1| f-box family protein [Populus trichocarpa] gi|222854763|gb|EEE92310.1| f-box family protein [Populus trichocarpa] Length = 396 Score = 138 bits (348), Expect = 2e-30 Identities = 103/279 (36%), Positives = 145/279 (51%), Gaps = 17/279 (6%) Frame = -3 Query: 991 LICLSNFKTFISLWNPSIREFVQLSCDDPVIKNEL--------CGV-VMGFGYDGVCEKY 839 L+C+SN I++WNPS R+ + P + EL C V V GFGYD V + Y Sbjct: 105 LLCISNVVDDIAVWNPSTRKHRVV----PFLPIELKRYFGTKSCSVYVFGFGYDSVRDDY 160 Query: 838 KLVRIEYFYDLDGSDFMTDFNRVEVKVYTLGSNVWRLVDDTP-CCYIGNINRVAHVDGVL 662 KLVRI F G F EVKVY+L WR + D P C + N V +G L Sbjct: 161 KLVRIAQF----GGGGKRSFES-EVKVYSLRKQSWRRIGDMPYCVHYPGANGV-FANGAL 214 Query: 661 YWIGLRGVGVGSWKSIVSFDLRNEKFGEVSWPAFEDRSYRDLGLGVLRGSLCTFSFHL-E 485 +W+ +V+ DL E + EV P ++D+++ + LGVLRG LC + L E Sbjct: 215 HWVVGENPESNVANIVVALDLGVEDYREVLQPEYKDKNFY-IDLGVLRGCLCFLANFLGE 273 Query: 484 RVDIWMIKNYGVKGTWTKHFSIAR-----STKHLEPLFLLKSG-EILLQMGLGSLLFYDP 323 RVD+WM+K YGVK +WTK FS+A+ + L+PL KSG E+L++ L +YD Sbjct: 274 RVDVWMMKEYGVKESWTKLFSVAQYEVIGFLRSLKPLAYSKSGDEVLIEHDNLDLCWYDL 333 Query: 322 ASDLTKAPSVSGIPDRFRTSTYVESLVPIASLMGMPGNS 206 K + GIP F T+VESL+ ++ + G + Sbjct: 334 KRKQVK-NRIPGIPYSFEADTFVESLISVSPNRHLDGRT 371 >ref|XP_003610528.1| F-box family protein [Medicago truncatula] gi|355511583|gb|AES92725.1| F-box family protein [Medicago truncatula] Length = 392 Score = 129 bits (323), Expect = 1e-27 Identities = 93/296 (31%), Positives = 142/296 (47%), Gaps = 17/296 (5%) Frame = -3 Query: 991 LICLSNFKTFISLWNPSIREFVQLSCDDPVIKNE----------LCGVVMGFGYDGVCEK 842 L+C+ N I+ WNP+IR+ ++ +P+I+ E L V GFGYD + Sbjct: 95 LLCICNIADDIAFWNPTIRKH-RIIPSEPLIRKETNENNTITTLLAAHVYGFGYDSATDD 153 Query: 841 YKLVRIEYFYDLDGSDFMTDFNRVEVKVYTLGSNVWRLVDDTPCCYIGNINRVAHVDGVL 662 YKLV I YF DL F + VK+YT+ ++VW+ + P V G L Sbjct: 154 YKLVSISYFVDLHNRSFDS-----HVKIYTMRTDVWKTLPSMPYALCCARTMGVFVSGAL 208 Query: 661 YWIGLRGVGVGSWKSIVSFDLRNEKFGEVSWPAFEDRSYRDLGLGVLRGSLCTFSFH-LE 485 +W+ R + S IV+FDLR E F EV+ P D + D+ + +LRG LC + Sbjct: 209 HWVVTRDLEPESRDLIVAFDLRFEVFREVALPGTVDGKF-DMDVALLRGMLCIIENRGSD 267 Query: 484 RVDIWMIKNYGVKGTWTKHFSI-----ARSTKHLEPLFLLKSGE-ILLQMGLGSLLFYDP 323 D+W+++ YG +W K F++ + K L+PL ++G+ +L + L +Y+ Sbjct: 268 GFDVWVMREYGSHDSWCKMFTVGQPRDVKLMKSLKPLGYSRNGDKVLFEQDSKKLCWYNL 327 Query: 322 ASDLTKAPSVSGIPDRFRTSTYVESLVPIASLMGMPGNSLATTISTGIKNKLHEEK 155 AS +SGIP+ + V SLV + +M S K KL EEK Sbjct: 328 ASKDVSWVRISGIPNSIEGTVCVGSLVKPSLMMNRSVQSK--------KQKLVEEK 375 >ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223527546|gb|EEF29668.1| ubiquitin-protein ligase, putative [Ricinus communis] Length = 389 Score = 126 bits (316), Expect = 9e-27 Identities = 93/268 (34%), Positives = 137/268 (51%), Gaps = 16/268 (5%) Frame = -3 Query: 991 LICLSNFKTFISLWNPSIREFVQLSCDDPVIKNEL--------CGV-VMGFGYDGVCEKY 839 L+C+ N I+LWNPSIR + P + EL C V V GFGYD + Y Sbjct: 98 LLCICNIVDDIALWNPSIRAHRVV----PYLPVELKRYFGMCSCRVSVFGFGYDLSNDDY 153 Query: 838 KLVRIEYFYDLDGSDFMTDFNRVEVKVYTLGSNVWRLVDDTPCCYIGNINRVAHVDGVLY 659 KLVRI F +D F + EVKV++L N WR + D P C + + +G L+ Sbjct: 154 KLVRIAQFGGVDRKSFES-----EVKVFSLRKNSWRRIADMPYCVLYPGENGIYANGALH 208 Query: 658 WIGLRGVGVGSWKSIVSFDLRNEKFGEVSWPAFEDRSYRDLGLGVLRGSLCTFSF-HLER 482 W+ + +IV+ DL E + V P F D + ++G+GVL+G L ++ ER Sbjct: 209 WLVSQDPDSTVADTIVALDLGVEDYHVVPKPEFVDMNC-NMGVGVLQGCLSLLAYARSER 267 Query: 481 VDIWMIKNYGVKGTWTKHFSIAR-----STKHLEPLFLLKSG-EILLQMGLGSLLFYDPA 320 VD+W+++ Y VK +W+K FS+AR + L+PL KSG E+L++ +L +YD Sbjct: 268 VDVWVMEEYMVKESWSKLFSVARLEVIGILRSLKPLAYSKSGNEVLIEHDNVNLFWYDLK 327 Query: 319 SDLTKAPSVSGIPDRFRTSTYVESLVPI 236 + G+P F V SLVP+ Sbjct: 328 RKEVVNVWIQGVPITFEAEICVGSLVPL 355 >ref|NP_001241466.1| uncharacterized protein LOC100815072 [Glycine max] gi|255637050|gb|ACU18857.1| unknown [Glycine max] Length = 406 Score = 123 bits (309), Expect = 6e-26 Identities = 84/259 (32%), Positives = 124/259 (47%), Gaps = 9/259 (3%) Frame = -3 Query: 991 LICLSNFKTFISLWNPSIREFVQLSCDDPVIKNEL---CGVVMGFGYDGVCEKYKLVRIE 821 L+C + + LWNPSIR +S P + N C G GYD V E YK+V + Sbjct: 155 LLCFAIKGDCVLLWNPSIR----VSKKSPPLGNNWRPGCFTAFGLGYDHVNEDYKVVAVF 210 Query: 820 YFYDLDGSDFMTDFNRVEVKVYTLGSNVWRLVDDTPCCYIGNINRVAHVDGVLYWIGLRG 641 D S++ F +VKVY++ +N WR + D P ++ N V G L W Sbjct: 211 ----CDPSEY---FIECKVKVYSMATNSWRKIQDFPHGFLPFQNSGKFVSGTLNWAANHS 263 Query: 640 VGVGSWKSIVSFDLRNEKFGEVSWPAFEDRSYRDLGLGVLRGSLC-TFSFHLERVDIWMI 464 +G S+ IVS DL E + EV P +E LGVL+G LC + + +WM+ Sbjct: 264 IGPSSFWVIVSLDLHKETYREVLPPDYEKEDCSTPSLGVLQGCLCMNYDYKKTHFVVWMM 323 Query: 463 KNYGVKGTWTKHFSI-----ARSTKHLEPLFLLKSGEILLQMGLGSLLFYDPASDLTKAP 299 K+YGV+ +W K SI + P ++ ++G++LL L+ YDP ++ K P Sbjct: 324 KDYGVRESWVKLVSIPYVPNPEDFSYSGPYYISENGKVLLMFEF-DLILYDPRNNSFKYP 382 Query: 298 SVSGIPDRFRTSTYVESLV 242 + F YVE+LV Sbjct: 383 KIESGKGWFDAEVYVETLV 401 >ref|XP_003546119.1| PREDICTED: F-box/kelch-repeat protein At3g23880-like [Glycine max] Length = 405 Score = 121 bits (303), Expect = 3e-25 Identities = 84/259 (32%), Positives = 122/259 (47%), Gaps = 9/259 (3%) Frame = -3 Query: 991 LICLSNFKTFISLWNPSIREFVQLSCDDPVIKNEL---CGVVMGFGYDGVCEKYKLVRIE 821 L+C + + LWNPSIR +S P + N C G GYD V E YK+V + Sbjct: 154 LLCFAIKGDCVLLWNPSIR----VSKKSPPLGNNWRPGCFTAFGLGYDHVNEDYKVVAVF 209 Query: 820 YFYDLDGSDFMTDFNRVEVKVYTLGSNVWRLVDDTPCCYIGNINRVAHVDGVLYWIGLRG 641 D S++ F +VKVY++ +N WR + D P + N V G L W Sbjct: 210 ----CDPSEY---FIECKVKVYSMATNSWRKIQDFPHGFSPFQNSGKFVSGTLNWAANHS 262 Query: 640 VGVGSWKSIVSFDLRNEKFGEVSWPAFEDRSYRDLGLGVLRGSLC-TFSFHLERVDIWMI 464 +G S IVS DL E + EV P +E GLGVL+G LC + + +WM+ Sbjct: 263 IGSSSLWVIVSLDLHKETYREVLPPDYEKEDCSTPGLGVLQGCLCMNYDYKKTHFVVWMM 322 Query: 463 KNYGVKGTWTKHFSI-----ARSTKHLEPLFLLKSGEILLQMGLGSLLFYDPASDLTKAP 299 K+YG + +W K SI + + P ++ ++GE+LL L+ Y+P + K P Sbjct: 323 KDYGARESWVKLVSIPYVPNPENFSYSGPYYISENGEVLLMFEF-DLILYNPRDNSFKYP 381 Query: 298 SVSGIPDRFRTSTYVESLV 242 + F YVE+LV Sbjct: 382 KIESGKGWFDAEVYVETLV 400