BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00005495
         (993 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002308787.1| f-box family protein [Populus trichocarpa] g...   138   2e-30
ref|XP_003610528.1| F-box family protein [Medicago truncatula] g...   129   1e-27
ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus ...   126   9e-27
ref|NP_001241466.1| uncharacterized protein LOC100815072 [Glycin...   123   6e-26
ref|XP_003546119.1| PREDICTED: F-box/kelch-repeat protein At3g23...   121   3e-25

>ref|XP_002308787.1| f-box family protein [Populus trichocarpa]
           gi|222854763|gb|EEE92310.1| f-box family protein
           [Populus trichocarpa]
          Length = 396

 Score =  138 bits (348), Expect = 2e-30
 Identities = 103/279 (36%), Positives = 145/279 (51%), Gaps = 17/279 (6%)
 Frame = -3

Query: 991 LICLSNFKTFISLWNPSIREFVQLSCDDPVIKNEL--------CGV-VMGFGYDGVCEKY 839
           L+C+SN    I++WNPS R+   +    P +  EL        C V V GFGYD V + Y
Sbjct: 105 LLCISNVVDDIAVWNPSTRKHRVV----PFLPIELKRYFGTKSCSVYVFGFGYDSVRDDY 160

Query: 838 KLVRIEYFYDLDGSDFMTDFNRVEVKVYTLGSNVWRLVDDTP-CCYIGNINRVAHVDGVL 662
           KLVRI  F    G      F   EVKVY+L    WR + D P C +    N V   +G L
Sbjct: 161 KLVRIAQF----GGGGKRSFES-EVKVYSLRKQSWRRIGDMPYCVHYPGANGV-FANGAL 214

Query: 661 YWIGLRGVGVGSWKSIVSFDLRNEKFGEVSWPAFEDRSYRDLGLGVLRGSLCTFSFHL-E 485
           +W+            +V+ DL  E + EV  P ++D+++  + LGVLRG LC  +  L E
Sbjct: 215 HWVVGENPESNVANIVVALDLGVEDYREVLQPEYKDKNFY-IDLGVLRGCLCFLANFLGE 273

Query: 484 RVDIWMIKNYGVKGTWTKHFSIAR-----STKHLEPLFLLKSG-EILLQMGLGSLLFYDP 323
           RVD+WM+K YGVK +WTK FS+A+       + L+PL   KSG E+L++     L +YD 
Sbjct: 274 RVDVWMMKEYGVKESWTKLFSVAQYEVIGFLRSLKPLAYSKSGDEVLIEHDNLDLCWYDL 333

Query: 322 ASDLTKAPSVSGIPDRFRTSTYVESLVPIASLMGMPGNS 206
                K   + GIP  F   T+VESL+ ++    + G +
Sbjct: 334 KRKQVK-NRIPGIPYSFEADTFVESLISVSPNRHLDGRT 371


>ref|XP_003610528.1| F-box family protein [Medicago truncatula]
           gi|355511583|gb|AES92725.1| F-box family protein
           [Medicago truncatula]
          Length = 392

 Score =  129 bits (323), Expect = 1e-27
 Identities = 93/296 (31%), Positives = 142/296 (47%), Gaps = 17/296 (5%)
 Frame = -3

Query: 991 LICLSNFKTFISLWNPSIREFVQLSCDDPVIKNE----------LCGVVMGFGYDGVCEK 842
           L+C+ N    I+ WNP+IR+  ++   +P+I+ E          L   V GFGYD   + 
Sbjct: 95  LLCICNIADDIAFWNPTIRKH-RIIPSEPLIRKETNENNTITTLLAAHVYGFGYDSATDD 153

Query: 841 YKLVRIEYFYDLDGSDFMTDFNRVEVKVYTLGSNVWRLVDDTPCCYIGNINRVAHVDGVL 662
           YKLV I YF DL    F +      VK+YT+ ++VW+ +   P            V G L
Sbjct: 154 YKLVSISYFVDLHNRSFDS-----HVKIYTMRTDVWKTLPSMPYALCCARTMGVFVSGAL 208

Query: 661 YWIGLRGVGVGSWKSIVSFDLRNEKFGEVSWPAFEDRSYRDLGLGVLRGSLCTFSFH-LE 485
           +W+  R +   S   IV+FDLR E F EV+ P   D  + D+ + +LRG LC       +
Sbjct: 209 HWVVTRDLEPESRDLIVAFDLRFEVFREVALPGTVDGKF-DMDVALLRGMLCIIENRGSD 267

Query: 484 RVDIWMIKNYGVKGTWTKHFSI-----ARSTKHLEPLFLLKSGE-ILLQMGLGSLLFYDP 323
             D+W+++ YG   +W K F++      +  K L+PL   ++G+ +L +     L +Y+ 
Sbjct: 268 GFDVWVMREYGSHDSWCKMFTVGQPRDVKLMKSLKPLGYSRNGDKVLFEQDSKKLCWYNL 327

Query: 322 ASDLTKAPSVSGIPDRFRTSTYVESLVPIASLMGMPGNSLATTISTGIKNKLHEEK 155
           AS       +SGIP+    +  V SLV  + +M     S         K KL EEK
Sbjct: 328 ASKDVSWVRISGIPNSIEGTVCVGSLVKPSLMMNRSVQSK--------KQKLVEEK 375


>ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223527546|gb|EEF29668.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 389

 Score =  126 bits (316), Expect = 9e-27
 Identities = 93/268 (34%), Positives = 137/268 (51%), Gaps = 16/268 (5%)
 Frame = -3

Query: 991 LICLSNFKTFISLWNPSIREFVQLSCDDPVIKNEL--------CGV-VMGFGYDGVCEKY 839
           L+C+ N    I+LWNPSIR    +    P +  EL        C V V GFGYD   + Y
Sbjct: 98  LLCICNIVDDIALWNPSIRAHRVV----PYLPVELKRYFGMCSCRVSVFGFGYDLSNDDY 153

Query: 838 KLVRIEYFYDLDGSDFMTDFNRVEVKVYTLGSNVWRLVDDTPCCYIGNINRVAHVDGVLY 659
           KLVRI  F  +D   F +     EVKV++L  N WR + D P C +       + +G L+
Sbjct: 154 KLVRIAQFGGVDRKSFES-----EVKVFSLRKNSWRRIADMPYCVLYPGENGIYANGALH 208

Query: 658 WIGLRGVGVGSWKSIVSFDLRNEKFGEVSWPAFEDRSYRDLGLGVLRGSLCTFSF-HLER 482
           W+  +        +IV+ DL  E +  V  P F D +  ++G+GVL+G L   ++   ER
Sbjct: 209 WLVSQDPDSTVADTIVALDLGVEDYHVVPKPEFVDMNC-NMGVGVLQGCLSLLAYARSER 267

Query: 481 VDIWMIKNYGVKGTWTKHFSIAR-----STKHLEPLFLLKSG-EILLQMGLGSLLFYDPA 320
           VD+W+++ Y VK +W+K FS+AR       + L+PL   KSG E+L++    +L +YD  
Sbjct: 268 VDVWVMEEYMVKESWSKLFSVARLEVIGILRSLKPLAYSKSGNEVLIEHDNVNLFWYDLK 327

Query: 319 SDLTKAPSVSGIPDRFRTSTYVESLVPI 236
                   + G+P  F     V SLVP+
Sbjct: 328 RKEVVNVWIQGVPITFEAEICVGSLVPL 355


>ref|NP_001241466.1| uncharacterized protein LOC100815072 [Glycine max]
           gi|255637050|gb|ACU18857.1| unknown [Glycine max]
          Length = 406

 Score =  123 bits (309), Expect = 6e-26
 Identities = 84/259 (32%), Positives = 124/259 (47%), Gaps = 9/259 (3%)
 Frame = -3

Query: 991 LICLSNFKTFISLWNPSIREFVQLSCDDPVIKNEL---CGVVMGFGYDGVCEKYKLVRIE 821
           L+C +     + LWNPSIR    +S   P + N     C    G GYD V E YK+V + 
Sbjct: 155 LLCFAIKGDCVLLWNPSIR----VSKKSPPLGNNWRPGCFTAFGLGYDHVNEDYKVVAVF 210

Query: 820 YFYDLDGSDFMTDFNRVEVKVYTLGSNVWRLVDDTPCCYIGNINRVAHVDGVLYWIGLRG 641
                D S++   F   +VKVY++ +N WR + D P  ++   N    V G L W     
Sbjct: 211 ----CDPSEY---FIECKVKVYSMATNSWRKIQDFPHGFLPFQNSGKFVSGTLNWAANHS 263

Query: 640 VGVGSWKSIVSFDLRNEKFGEVSWPAFEDRSYRDLGLGVLRGSLC-TFSFHLERVDIWMI 464
           +G  S+  IVS DL  E + EV  P +E        LGVL+G LC  + +      +WM+
Sbjct: 264 IGPSSFWVIVSLDLHKETYREVLPPDYEKEDCSTPSLGVLQGCLCMNYDYKKTHFVVWMM 323

Query: 463 KNYGVKGTWTKHFSI-----ARSTKHLEPLFLLKSGEILLQMGLGSLLFYDPASDLTKAP 299
           K+YGV+ +W K  SI          +  P ++ ++G++LL      L+ YDP ++  K P
Sbjct: 324 KDYGVRESWVKLVSIPYVPNPEDFSYSGPYYISENGKVLLMFEF-DLILYDPRNNSFKYP 382

Query: 298 SVSGIPDRFRTSTYVESLV 242
            +      F    YVE+LV
Sbjct: 383 KIESGKGWFDAEVYVETLV 401


>ref|XP_003546119.1| PREDICTED: F-box/kelch-repeat protein At3g23880-like [Glycine max]
          Length = 405

 Score =  121 bits (303), Expect = 3e-25
 Identities = 84/259 (32%), Positives = 122/259 (47%), Gaps = 9/259 (3%)
 Frame = -3

Query: 991 LICLSNFKTFISLWNPSIREFVQLSCDDPVIKNEL---CGVVMGFGYDGVCEKYKLVRIE 821
           L+C +     + LWNPSIR    +S   P + N     C    G GYD V E YK+V + 
Sbjct: 154 LLCFAIKGDCVLLWNPSIR----VSKKSPPLGNNWRPGCFTAFGLGYDHVNEDYKVVAVF 209

Query: 820 YFYDLDGSDFMTDFNRVEVKVYTLGSNVWRLVDDTPCCYIGNINRVAHVDGVLYWIGLRG 641
                D S++   F   +VKVY++ +N WR + D P  +    N    V G L W     
Sbjct: 210 ----CDPSEY---FIECKVKVYSMATNSWRKIQDFPHGFSPFQNSGKFVSGTLNWAANHS 262

Query: 640 VGVGSWKSIVSFDLRNEKFGEVSWPAFEDRSYRDLGLGVLRGSLC-TFSFHLERVDIWMI 464
           +G  S   IVS DL  E + EV  P +E       GLGVL+G LC  + +      +WM+
Sbjct: 263 IGSSSLWVIVSLDLHKETYREVLPPDYEKEDCSTPGLGVLQGCLCMNYDYKKTHFVVWMM 322

Query: 463 KNYGVKGTWTKHFSI-----ARSTKHLEPLFLLKSGEILLQMGLGSLLFYDPASDLTKAP 299
           K+YG + +W K  SI       +  +  P ++ ++GE+LL      L+ Y+P  +  K P
Sbjct: 323 KDYGARESWVKLVSIPYVPNPENFSYSGPYYISENGEVLLMFEF-DLILYNPRDNSFKYP 381

Query: 298 SVSGIPDRFRTSTYVESLV 242
            +      F    YVE+LV
Sbjct: 382 KIESGKGWFDAEVYVETLV 400