BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00005471
         (254 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270788.1| PREDICTED: pentatricopeptide repeat-containi...    66   3e-09
gb|ABD33237.1| Pentatricopeptide repeat [Medicago truncatula]          61   1e-07
ref|XP_003616089.1| Pentatricopeptide repeat-containing protein ...    60   2e-07
ref|XP_003616088.1| Pentatricopeptide repeat-containing protein ...    60   2e-07
ref|XP_003553441.1| PREDICTED: pentatricopeptide repeat-containi...    58   9e-07

>ref|XP_002270788.1| PREDICTED: pentatricopeptide repeat-containing protein At2g30780
           [Vitis vinifera] gi|296086664|emb|CBI32299.3| unnamed
           protein product [Vitis vinifera]
          Length = 494

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 31/51 (60%), Positives = 36/51 (70%)
 Frame = -1

Query: 251 EMERFNFDPTKKTFLIMYKAYSHWGQRSRVMRLLGTMCKHGFQIPSDAFFS 99
           EME  NF  TKKTF I+YKAYS W QR +V ++ G MCKHG+ IPSD   S
Sbjct: 444 EMESSNFCCTKKTFWILYKAYSMWDQRHKVEQVKGLMCKHGYGIPSDVLLS 494


>gb|ABD33237.1| Pentatricopeptide repeat [Medicago truncatula]
          Length = 514

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 28/50 (56%), Positives = 36/50 (72%)
 Frame = -1

Query: 254 KEMERFNFDPTKKTFLIMYKAYSHWGQRSRVMRLLGTMCKHGFQIPSDAF 105
           +EM+  N   TKKT  IMYKAY + GQRS V+++LG M KHG ++P DAF
Sbjct: 463 EEMDSVNIQRTKKTMWIMYKAYWNCGQRSMVLKILGQMFKHGHEVPIDAF 512


>ref|XP_003616089.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355517424|gb|AES99047.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 552

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 28/50 (56%), Positives = 35/50 (70%)
 Frame = -1

Query: 254 KEMERFNFDPTKKTFLIMYKAYSHWGQRSRVMRLLGTMCKHGFQIPSDAF 105
           +EM+  N   TKKT  IMYKAY   GQRS V+++LG M KHG ++P DAF
Sbjct: 501 EEMDSVNMQRTKKTLWIMYKAYWSCGQRSLVLKILGQMFKHGHEVPIDAF 550


>ref|XP_003616088.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355517423|gb|AES99046.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 494

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 28/50 (56%), Positives = 35/50 (70%)
 Frame = -1

Query: 254 KEMERFNFDPTKKTFLIMYKAYSHWGQRSRVMRLLGTMCKHGFQIPSDAF 105
           +EM+  N   TKKT  IMYKAY   GQRS V+++LG M KHG ++P DAF
Sbjct: 443 EEMDSVNMQRTKKTLWIMYKAYWSCGQRSLVLKILGQMFKHGHEVPIDAF 492


>ref|XP_003553441.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g30780-like [Glycine max]
          Length = 504

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 27/50 (54%), Positives = 34/50 (68%)
 Frame = -1

Query: 254 KEMERFNFDPTKKTFLIMYKAYSHWGQRSRVMRLLGTMCKHGFQIPSDAF 105
           +EME  N + TKKT  IMYKAY   GQ S V++ LG M KHG+++P  AF
Sbjct: 453 EEMEMVNLECTKKTLWIMYKAYMRNGQSSMVLKTLGQMFKHGYEVPLSAF 502