BLASTX nr result
ID: Coptis24_contig00005442
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00005442
(1826 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002529988.1| conserved hypothetical protein [Ricinus comm... 843 0.0
emb|CBI20795.3| unnamed protein product [Vitis vinifera] 841 0.0
ref|XP_002280874.2| PREDICTED: retinoblastoma-related protein-li... 841 0.0
ref|XP_004157544.1| PREDICTED: retinoblastoma-related protein-li... 838 0.0
ref|XP_004142479.1| PREDICTED: retinoblastoma-related protein-li... 837 0.0
>ref|XP_002529988.1| conserved hypothetical protein [Ricinus communis]
gi|254789790|sp|B9SVG9.1|RBR_RICCO RecName:
Full=Retinoblastoma-related protein
gi|223530511|gb|EEF32393.1| conserved hypothetical
protein [Ricinus communis]
Length = 1020
Score = 843 bits (2179), Expect = 0.0
Identities = 424/536 (79%), Positives = 473/536 (88%), Gaps = 5/536 (0%)
Frame = -3
Query: 1824 MDSIWAEQRRMEALKLYYRVLEAMCKAEAQVVQANTLNSLLNNERFHRCMLACSAELVLA 1645
MD+IWAEQRR+EALKLYYRVLEAMC AEAQ++ A L SLL NERFHRCMLACSAELVLA
Sbjct: 489 MDNIWAEQRRLEALKLYYRVLEAMCTAEAQILHATNLTSLLTNERFHRCMLACSAELVLA 548
Query: 1644 THKTVTLLFPVVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEK 1465
THKTVT+LFP VLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEK
Sbjct: 549 THKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEK 608
Query: 1464 GSSMYNSLIVARPTLSAEINRLGLLAEPMPSLDAIAMHYNISFGSLPPLPSLHKHE-TPG 1288
GSSMYNSL VARP+LSAEINRLGLLAEPMPSLDAIA+H N S G LPPL S+ KHE +PG
Sbjct: 609 GSSMYNSLTVARPSLSAEINRLGLLAEPMPSLDAIAVHINFSSGGLPPLSSVSKHEISPG 668
Query: 1287 QNGDIRSPKRACGEYRSVLVERNSFTSPLKDHLLGFNSLKPKLLGPPLQSAFASPTRPNP 1108
QNGDIRSPKR C +YRSVLVERNSFTSP+KD LL F +LK KL PPLQSAFASPTRPNP
Sbjct: 669 QNGDIRSPKRPCTDYRSVLVERNSFTSPVKDRLLAFTNLKSKLPPPPLQSAFASPTRPNP 728
Query: 1107 GGGGETCAETGINVFFTKILKLAAVRINALIERLKLNQ-HIRETVYCLVQQILSQRTALF 931
GGGGETCAETGIN+FF+KI KLAAVRIN ++ERL+ +Q HIRE VY L QQ+LSQ+T+LF
Sbjct: 729 GGGGETCAETGINIFFSKINKLAAVRINGMVERLQQSQQHIRENVYRLFQQVLSQQTSLF 788
Query: 930 FNRHIDQIILCSLYGVSKISQLDLKFKEIVYNYRKQPQCKPQVFRSVFVNWSSARHNAKT 751
FNRHIDQIILC YGV+KIS+++L F+EI+YNYRKQPQCKPQVFRSVFV+WSSARHN +T
Sbjct: 789 FNRHIDQIILCCFYGVAKISKVNLTFREIIYNYRKQPQCKPQVFRSVFVDWSSARHNGRT 848
Query: 750 GQEHVDIITFYNEIFVPSVKPLLVELGPAGATLKSDLVPQVSKKNDGQCPGSPRVSSFPT 571
GQ+HVDIITFYNEIF+P+ KPLLVE+G AG T+K VP+V+ DGQCP SP+VS FP+
Sbjct: 849 GQDHVDIITFYNEIFIPAAKPLLVEVGSAGITVKGSQVPEVNNNKDGQCPASPKVSPFPS 908
Query: 570 LPDMSPKKVSSAHNVYVSPLRSSKMDALISHSSRSYYACVGESTHAYQSPSKDLTAINDR 391
LPDMSPKKVS+AHNVYVSPLR+SKMDALISHSS+SYYACVGESTHAYQSPSKDLTAIN+R
Sbjct: 909 LPDMSPKKVSAAHNVYVSPLRTSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNR 968
Query: 390 LNG-KKVNSRLNFD--DVGLVSDSLVMGSLYPPNGNCTSSSGVAALISPFKSEQPD 232
LNG + + LNFD DVGLVSDS+V SLY NG+C S+SG +P K+EQPD
Sbjct: 969 LNGNRNIRGSLNFDDVDVGLVSDSMVAKSLYLQNGSCASTSG-----APLKTEQPD 1019
>emb|CBI20795.3| unnamed protein product [Vitis vinifera]
Length = 1006
Score = 841 bits (2172), Expect = 0.0
Identities = 422/536 (78%), Positives = 473/536 (88%), Gaps = 4/536 (0%)
Frame = -3
Query: 1824 MDSIWAEQRRMEALKLYYRVLEAMCKAEAQVVQANTLNSLLNNERFHRCMLACSAELVLA 1645
MDSIWA+QRRMEA+KLYYRVLEAMC AEAQV+ AN L SLL NERFHRCMLACSAELVLA
Sbjct: 476 MDSIWAQQRRMEAMKLYYRVLEAMCTAEAQVLHANNLTSLLTNERFHRCMLACSAELVLA 535
Query: 1644 THKTVTLLFPVVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEK 1465
THKTVT+LFP VLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEK
Sbjct: 536 THKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEK 595
Query: 1464 GSSMYNSLIVARPTLSAEINRLGLLAEPMPSLDAIAMHYNISFGSLPPLPSLHKHET-PG 1288
GSSMYNSLIVAR LSAE+NRLGLLAEPMPSLDAI+MH N S G LPP+PSL K E+ PG
Sbjct: 596 GSSMYNSLIVARAALSAEVNRLGLLAEPMPSLDAISMHINASCGGLPPVPSLQKRESSPG 655
Query: 1287 QNGDIRSPKRACGEYRSVLVERNSFTSPLKDHLLGFNSLKPKLLGPPLQSAFASPTRPNP 1108
QNGDIRSPKR C +YRSVLVERNSFTSP+KD L N+LK KL PPLQSAFASPTRPNP
Sbjct: 656 QNGDIRSPKRVCPDYRSVLVERNSFTSPVKDRFLALNNLKSKLPPPPLQSAFASPTRPNP 715
Query: 1107 GGGGETCAETGINVFFTKILKLAAVRINALIERLKLNQHIRETVYCLVQQILSQRTALFF 928
G GETCAETGIN+FF+KI+KLAAVRIN ++ERL+L+Q +RE VYCL QQIL++RT+LFF
Sbjct: 716 GREGETCAETGINIFFSKIIKLAAVRINGMVERLQLSQQMRENVYCLFQQILNRRTSLFF 775
Query: 927 NRHIDQIILCSLYGVSKISQLDLKFKEIVYNYRKQPQCKPQVFRSVFVNWSSARHNAKTG 748
NRHIDQIILC YG++KISQ++L F+EI++NYRKQPQCKPQ+FRSVFV+WSSAR N KTG
Sbjct: 776 NRHIDQIILCCFYGLAKISQMNLTFREIIHNYRKQPQCKPQIFRSVFVDWSSARRNGKTG 835
Query: 747 QEHVDIITFYNEIFVPSVKPLLVELGP-AGATLKSDLVPQVSKKNDGQCPGSPRVSSFPT 571
+EHVDIITFYNEIF+P+VKPLL+E+GP G T K++ VP+V+ ND QCP SP++S FP+
Sbjct: 836 KEHVDIITFYNEIFIPAVKPLLMEIGPGGGTTTKTNRVPEVNNNNDAQCPESPKISPFPS 895
Query: 570 LPDMSPKKVSSAHNVYVSPLRSSKMDALISHSSRSYYACVGESTHAYQSPSKDLTAINDR 391
LPDMSPKKVS+AHNVYVSPLRSSKMDALISHSS+SYYACVGESTHAYQSPSKDLTAIN+R
Sbjct: 896 LPDMSPKKVSAAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNR 955
Query: 390 LNG-KKVNSRLNFDDV-GLVSDSLVMGSLYPPNGNCTSSSGVAALISPFKSEQPDS 229
LN +K+ LNFDDV GLVSDSLV SLY NG+C SSSG +P K EQPD+
Sbjct: 956 LNSTRKLRGALNFDDVEGLVSDSLVAKSLYLQNGSCASSSG-----APLKLEQPDT 1006
>ref|XP_002280874.2| PREDICTED: retinoblastoma-related protein-like [Vitis vinifera]
gi|254789791|sp|A7P514.1|RBR_VITVI RecName:
Full=Retinoblastoma-related protein
gi|359392418|gb|AEV45768.1| RBR protein [Vitis
pseudoreticulata]
Length = 1007
Score = 841 bits (2172), Expect = 0.0
Identities = 422/536 (78%), Positives = 473/536 (88%), Gaps = 4/536 (0%)
Frame = -3
Query: 1824 MDSIWAEQRRMEALKLYYRVLEAMCKAEAQVVQANTLNSLLNNERFHRCMLACSAELVLA 1645
MDSIWA+QRRMEA+KLYYRVLEAMC AEAQV+ AN L SLL NERFHRCMLACSAELVLA
Sbjct: 477 MDSIWAQQRRMEAMKLYYRVLEAMCTAEAQVLHANNLTSLLTNERFHRCMLACSAELVLA 536
Query: 1644 THKTVTLLFPVVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEK 1465
THKTVT+LFP VLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEK
Sbjct: 537 THKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEK 596
Query: 1464 GSSMYNSLIVARPTLSAEINRLGLLAEPMPSLDAIAMHYNISFGSLPPLPSLHKHET-PG 1288
GSSMYNSLIVAR LSAE+NRLGLLAEPMPSLDAI+MH N S G LPP+PSL K E+ PG
Sbjct: 597 GSSMYNSLIVARAALSAEVNRLGLLAEPMPSLDAISMHINASCGGLPPVPSLQKRESSPG 656
Query: 1287 QNGDIRSPKRACGEYRSVLVERNSFTSPLKDHLLGFNSLKPKLLGPPLQSAFASPTRPNP 1108
QNGDIRSPKR C +YRSVLVERNSFTSP+KD L N+LK KL PPLQSAFASPTRPNP
Sbjct: 657 QNGDIRSPKRVCPDYRSVLVERNSFTSPVKDRFLALNNLKSKLPPPPLQSAFASPTRPNP 716
Query: 1107 GGGGETCAETGINVFFTKILKLAAVRINALIERLKLNQHIRETVYCLVQQILSQRTALFF 928
G GETCAETGIN+FF+KI+KLAAVRIN ++ERL+L+Q +RE VYCL QQIL++RT+LFF
Sbjct: 717 GREGETCAETGINIFFSKIIKLAAVRINGMVERLQLSQQMRENVYCLFQQILNRRTSLFF 776
Query: 927 NRHIDQIILCSLYGVSKISQLDLKFKEIVYNYRKQPQCKPQVFRSVFVNWSSARHNAKTG 748
NRHIDQIILC YG++KISQ++L F+EI++NYRKQPQCKPQ+FRSVFV+WSSAR N KTG
Sbjct: 777 NRHIDQIILCCFYGLAKISQMNLTFREIIHNYRKQPQCKPQIFRSVFVDWSSARRNGKTG 836
Query: 747 QEHVDIITFYNEIFVPSVKPLLVELGP-AGATLKSDLVPQVSKKNDGQCPGSPRVSSFPT 571
+EHVDIITFYNEIF+P+VKPLL+E+GP G T K++ VP+V+ ND QCP SP++S FP+
Sbjct: 837 KEHVDIITFYNEIFIPAVKPLLMEIGPGGGTTTKTNRVPEVNNNNDAQCPESPKISPFPS 896
Query: 570 LPDMSPKKVSSAHNVYVSPLRSSKMDALISHSSRSYYACVGESTHAYQSPSKDLTAINDR 391
LPDMSPKKVS+AHNVYVSPLRSSKMDALISHSS+SYYACVGESTHAYQSPSKDLTAIN+R
Sbjct: 897 LPDMSPKKVSAAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNR 956
Query: 390 LNG-KKVNSRLNFDDV-GLVSDSLVMGSLYPPNGNCTSSSGVAALISPFKSEQPDS 229
LN +K+ LNFDDV GLVSDSLV SLY NG+C SSSG +P K EQPD+
Sbjct: 957 LNSTRKLRGALNFDDVEGLVSDSLVAKSLYLQNGSCASSSG-----APLKLEQPDT 1007
>ref|XP_004157544.1| PREDICTED: retinoblastoma-related protein-like [Cucumis sativus]
Length = 1125
Score = 838 bits (2165), Expect = 0.0
Identities = 419/536 (78%), Positives = 473/536 (88%), Gaps = 4/536 (0%)
Frame = -3
Query: 1824 MDSIWAEQRRMEALKLYYRVLEAMCKAEAQVVQANTLNSLLNNERFHRCMLACSAELVLA 1645
MD+IWAEQRR+EALKLYYRVLEAMC+AE+Q++ L SLL NERFHRCMLACSAELVLA
Sbjct: 595 MDNIWAEQRRLEALKLYYRVLEAMCRAESQMLHVTNLTSLLTNERFHRCMLACSAELVLA 654
Query: 1644 THKTVTLLFPVVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEK 1465
THKTVT+LFP VLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEK
Sbjct: 655 THKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEK 714
Query: 1464 GSSMYNSLIVARPTLSAEINRLGLLAEPMPSLDAIAMHYNISFGSLPPLPSLHKHET-PG 1288
GSS+YNSLIVA+P L AEINRLGLLAEPMPSLDAIA+ N S + P+L KHE+ PG
Sbjct: 715 GSSIYNSLIVAKPGLGAEINRLGLLAEPMPSLDAIAVQINFSGIGVSATPNLQKHESLPG 774
Query: 1287 QNGDIRSPKRACGEYRSVLVERNSFTSPLKDHLLGFNSLKPKLLGPPLQSAFASPTRPNP 1108
QNGDIRSPKR C + RSVLVERNSFTSP+KD L+ F+S+K KLL PPLQSAFASPTRPNP
Sbjct: 775 QNGDIRSPKRLCTDLRSVLVERNSFTSPVKDRLMAFSSIKSKLLPPPLQSAFASPTRPNP 834
Query: 1107 GGGGETCAETGINVFFTKILKLAAVRINALIERLKLNQHIRETVYCLVQQILSQRTALFF 928
GGGGETCAETGIN+FF+KI KLAAVR+N ++ERL+L+ IRE VYCL QQILSQ+T++ F
Sbjct: 835 GGGGETCAETGINIFFSKITKLAAVRVNGMVERLQLSHQIRENVYCLFQQILSQKTSILF 894
Query: 927 NRHIDQIILCSLYGVSKISQLDLKFKEIVYNYRKQPQCKPQVFRSVFVNWSSARHNAKTG 748
NRHIDQIILC YGV+KISQL L F+EI+YNYRKQPQCKPQVFR+VFV+WSSAR N ++G
Sbjct: 895 NRHIDQIILCCFYGVAKISQLSLTFREIIYNYRKQPQCKPQVFRNVFVDWSSARRNGRSG 954
Query: 747 QEHVDIITFYNEIFVPSVKPLLVELGPAGATLKSDLVPQVSKKNDGQCPGSPRVSSFPTL 568
Q+HVDIITFYNEIF+PSVKPLLVE+GPAG+T+K+D VPQV+ +D CPGSP++S FP+L
Sbjct: 955 QDHVDIITFYNEIFIPSVKPLLVEIGPAGSTMKTDRVPQVNNDSDAPCPGSPKLSPFPSL 1014
Query: 567 PDMSPKKVSSAHNVYVSPLRSSKMDALISHSSRSYYACVGESTHAYQSPSKDLTAINDRL 388
PDMSPKKVSSAHNVYVSPLRSSKMDALISHSS+SYYACVGESTHA+QSPSKDLTAIN+RL
Sbjct: 1015 PDMSPKKVSSAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAFQSPSKDLTAINNRL 1074
Query: 387 NG-KKVNSRLNFD--DVGLVSDSLVMGSLYPPNGNCTSSSGVAALISPFKSEQPDS 229
NG +K+ LNFD DVGLVSDSLV SLY NG+C SSSG +P KSEQP+S
Sbjct: 1075 NGTRKLRGTLNFDDADVGLVSDSLVANSLYLQNGSCGSSSG-----APIKSEQPES 1125
>ref|XP_004142479.1| PREDICTED: retinoblastoma-related protein-like [Cucumis sativus]
Length = 1024
Score = 837 bits (2162), Expect = 0.0
Identities = 418/536 (77%), Positives = 473/536 (88%), Gaps = 4/536 (0%)
Frame = -3
Query: 1824 MDSIWAEQRRMEALKLYYRVLEAMCKAEAQVVQANTLNSLLNNERFHRCMLACSAELVLA 1645
MD+IWAEQRR+EALKLYYRVLEAMC+AE+Q++ L SLL NERFHRCMLACSAELVLA
Sbjct: 494 MDNIWAEQRRLEALKLYYRVLEAMCRAESQMLHVTNLTSLLTNERFHRCMLACSAELVLA 553
Query: 1644 THKTVTLLFPVVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEK 1465
THKTVT+LFP VLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEK
Sbjct: 554 THKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEK 613
Query: 1464 GSSMYNSLIVARPTLSAEINRLGLLAEPMPSLDAIAMHYNISFGSLPPLPSLHKHET-PG 1288
GSS+YNSLIVA+P L AEINRLGLLAEPMPSLDAIA+ N S + P+L +HE+ PG
Sbjct: 614 GSSIYNSLIVAKPGLGAEINRLGLLAEPMPSLDAIAVQINFSGIGVSATPNLQRHESLPG 673
Query: 1287 QNGDIRSPKRACGEYRSVLVERNSFTSPLKDHLLGFNSLKPKLLGPPLQSAFASPTRPNP 1108
QNGDIRSPKR C + RSVLVERNSFTSP+KD L+ F+S+K KLL PPLQSAFASPTRPNP
Sbjct: 674 QNGDIRSPKRLCTDLRSVLVERNSFTSPVKDRLMAFSSIKSKLLPPPLQSAFASPTRPNP 733
Query: 1107 GGGGETCAETGINVFFTKILKLAAVRINALIERLKLNQHIRETVYCLVQQILSQRTALFF 928
GGGGETCAETGIN+FF+KI KLAAVR+N ++ERL+L+ IRE VYCL QQILSQ+T++ F
Sbjct: 734 GGGGETCAETGINIFFSKITKLAAVRVNGMVERLQLSHQIRENVYCLFQQILSQKTSILF 793
Query: 927 NRHIDQIILCSLYGVSKISQLDLKFKEIVYNYRKQPQCKPQVFRSVFVNWSSARHNAKTG 748
NRHIDQIILC YGV+KISQL L F+EI+YNYRKQPQCKPQVFR+VFV+WSSAR N ++G
Sbjct: 794 NRHIDQIILCCFYGVAKISQLSLTFREIIYNYRKQPQCKPQVFRNVFVDWSSARRNGRSG 853
Query: 747 QEHVDIITFYNEIFVPSVKPLLVELGPAGATLKSDLVPQVSKKNDGQCPGSPRVSSFPTL 568
Q+HVDIITFYNEIF+PSVKPLLVE+GPAG+T+K+D VPQV+ +D CPGSP++S FP+L
Sbjct: 854 QDHVDIITFYNEIFIPSVKPLLVEIGPAGSTMKTDRVPQVNNDSDAPCPGSPKLSPFPSL 913
Query: 567 PDMSPKKVSSAHNVYVSPLRSSKMDALISHSSRSYYACVGESTHAYQSPSKDLTAINDRL 388
PDMSPKKVSSAHNVYVSPLRSSKMDALISHSS+SYYACVGESTHA+QSPSKDLTAIN+RL
Sbjct: 914 PDMSPKKVSSAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAFQSPSKDLTAINNRL 973
Query: 387 NG-KKVNSRLNFD--DVGLVSDSLVMGSLYPPNGNCTSSSGVAALISPFKSEQPDS 229
NG +K+ LNFD DVGLVSDSLV SLY NG+C SSSG +P KSEQP+S
Sbjct: 974 NGTRKLRGTLNFDDADVGLVSDSLVANSLYLQNGSCGSSSG-----APIKSEQPES 1024